Uses of Interface
org.biopax.paxtools.query.model.Edge

Packages that use Edge

Package	Description
org.biopax.paxtools.query.algorithm	This package contains the SIF rules for BioPAX Level 3.
org.biopax.paxtools.query.model	This package contains the SIF rules for BioPAX Level 3.
org.biopax.paxtools.query.wrapperL3	This package contains TODO annotate!

Uses of Edge in org.biopax.paxtools.query.algorithm

Methods in org.biopax.paxtools.query.algorithm with parameters of type Edge

Modifier and Type	Method and Description
boolean	CycleBreaker.isSafe(Node node, Edge edge) Checks whether an edge is on an unwanted cycle.

Uses of Edge in org.biopax.paxtools.query.model

Classes in org.biopax.paxtools.query.model that implement Edge

Modifier and Type	Class and Description
class	AbstractEdge The base class for an edge in the traversed graph.

Fields in org.biopax.paxtools.query.model with type parameters of type Edge

Modifier and Type	Field and Description
protected Set<Edge>	AbstractNode.downstream Set of downstream edges.
protected Set<Edge>	AbstractNode.upstream Set of upstream edges.

Methods in org.biopax.paxtools.query.model that return types with arguments of type Edge

Modifier and Type	Method and Description
Collection<Edge>	AbstractNode.getDownstream() Gets the downstream edges.
Collection<Edge>	Node.getDownstream()
Collection<Edge>	AbstractNode.getDownstreamNoInit() This class gets the downstream links but does not initialize.
Collection<Edge>	AbstractNode.getUpstream() Gets the upstream edges.
Collection<Edge>	Node.getUpstream()
Collection<Edge>	AbstractNode.getUpstreamNoInit() This class gets the upstream links but does not initialize.

Uses of Edge in org.biopax.paxtools.query.wrapperL3

Classes in org.biopax.paxtools.query.wrapperL3 that implement Edge

Modifier and Type	Class and Description
class	EdgeL3 Wrapper for links between L3 objects.