org.biopax.paxtools.query.wrapperL3undirected

Class EdgeL3

java.lang.Object

org.biopax.paxtools.query.model.AbstractEdge

org.biopax.paxtools.query.wrapperL3undirected.EdgeL3

All Implemented Interfaces:

Edge, GraphObject

public class EdgeL3
extends AbstractEdge

Wrapper for links between L3 objects.

Author:

Ozgun Babur

Constructor Summary

Constructors

Constructor and Description
EdgeL3(Node source, Node target, Graph graph) Constructor with source and target nodes, and the owner graph.

Method Summary

Modifier and Type	Method and Description
boolean	isTranscription()
void	setTranscription(boolean transcription) Set the transcription flag.

Methods inherited from class org.biopax.paxtools.query.model.AbstractEdge

clear, equals, getGraph, getKey, getSign, getSourceNode, getTargetNode, hashCode

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EdgeL3

public EdgeL3(Node source,
              Node target,
              Graph graph)

Constructor with source and target nodes, and the owner graph. Sets transcription flag to False by default.

Parameters:

source - Source node

target - Target node

graph - Owner graph

Method Detail

isTranscription

public boolean isTranscription()

Returns:

True if this is related to a transcription

setTranscription

public void setTranscription(boolean transcription)

Set the transcription flag.

Parameters:

transcription - The transcription flag