Package org.biopax.paxtools.query.algorithm

Class NeighborhoodQuery

java.lang.Object

org.biopax.paxtools.query.algorithm.NeighborhoodQuery

public class NeighborhoodQuery
extends Object

Searches the neighborhood of given source set of nodes

Author:

Shatlyk Ashyralyev

Constructor Summary

Constructors

Constructor	Description
NeighborhoodQuery(Set<Node> sourceNodes, Direction direction, int limit)	Constructor with parameters.

Method Summary

Modifier and Type	Method	Description
Set<GraphObject>	run()	Executes the query.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

NeighborhoodQuery

public NeighborhoodQuery(Set<Node> sourceNodes,
 Direction direction,
 int limit)

Constructor with parameters.

Parameters:

sourceNodes - Seed to the query

direction - Direction of the search

limit - Distance limit

Method Details

run

public Set<GraphObject> run()

Executes the query.

Returns:

Neighborhood