Uses of Enum Class
org.biopax.paxtools.query.algorithm.Direction

Packages that use Direction

Package	Description
org.biopax.paxtools.query	Graph-theoretic querying module in Paxtools is used for identifying paths between molecules or identifying other molecules that is reachable through some specific paths using the BioPAX data model.
org.biopax.paxtools.query.algorithm	This package contains the SIF rules for BioPAX Level 3.

Uses of Direction in org.biopax.paxtools.query

Methods in org.biopax.paxtools.query with parameters of type Direction

Modifier and Type	Method	Description
static Set<BioPAXElement>	QueryExecuter.runCommonStream(Set<BioPAXElement> sourceSet, Model model, Direction direction, int limit, Filter... filters)	Gets the elements in the common upstream or downstream of the seed
static Set<BioPAXElement>	QueryExecuter.runCommonStreamMultiSet(Set<Set<BioPAXElement>> sourceSets, Model model, Direction direction, int limit, Filter... filters)	Gets the elements in the common upstream or downstream of the seed
static Set<BioPAXElement>	QueryExecuter.runCommonStreamWithPOI(Set<BioPAXElement> sourceSet, Model model, Direction direction, int limit, Filter... filters)	First finds the common stream, then completes it with the paths between seed and common stream.
static Set<BioPAXElement>	QueryExecuter.runCommonStreamWithPOIMultiSet(Set<Set<BioPAXElement>> sourceSets, Model model, Direction direction, int limit, Filter... filters)	First finds the common stream, then completes it with the paths between seed and common stream.
static Set<BioPAXElement>	QueryExecuter.runNeighborhood(Set<BioPAXElement> sourceSet, Model model, int limit, Direction direction, Filter... filters)	Gets neighborhood of the source set.
static Set<BioPAXElement>	QueryExecuter.runNeighborhoodMultiSet(Set<Set<BioPAXElement>> sourceSets, Model model, int limit, Direction direction, Filter... filters)	Gets neighborhood of the source set.

Uses of Direction in org.biopax.paxtools.query.algorithm

Fields in org.biopax.paxtools.query.algorithm declared as Direction

Modifier and Type	Field	Description
protected Direction	BFS.direction	Whether the direction is FORWARD, it is REVERSE otherwise.

Methods in org.biopax.paxtools.query.algorithm that return Direction

Modifier and Type	Method	Description
static Direction	Direction.valueOf(String name)	Returns the enum constant of this class with the specified name.
static Direction[]	Direction.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Constructors in org.biopax.paxtools.query.algorithm with parameters of type Direction

Modifier	Constructor	Description
	BFS(Set<Node> sourceSet, Set<Node> stopSet, Direction direction, int limit)	Constructor with all parameters.
	CommonStreamQuery(Collection<Set<Node>> sourceStateSet, Direction direction, int limit)	Constructor for Common Stream with Entity States.
	CommonStreamQuery(Set<Node> sourceNodeSet, Direction direction, int limit)	Constructor for Common Stream with Selected Nodes.
	NeighborhoodQuery(Set<Node> sourceNodes, Direction direction, int limit)	Constructor with parameters.