Package org.biopax.paxtools.query.model

package org.biopax.paxtools.query.model

This package contains the SIF rules for BioPAX Level 3.

Related Packages

Package	Description
org.biopax.paxtools.query	Graph-theoretic querying module in Paxtools is used for identifying paths between molecules or identifying other molecules that is reachable through some specific paths using the BioPAX data model.
org.biopax.paxtools.query.algorithm	This package contains the SIF rules for BioPAX Level 3.
org.biopax.paxtools.query.wrapperL3	This package contains TODO annotate!
org.biopax.paxtools.query.wrapperL3undirected	This package contains TODO annotate!

Class	Description
AbstractEdge	The base class for an edge in the traversed graph.
AbstractGraph	Adapter class for a graph that is queried.
AbstractNode
Edge	Wrapper interface for edges in a graph to be queried.
Graph	This graph interface is used in graph algorithms.
GraphObject	A graph object is the common interface for nodes and edges in a graph.
Node	Node interface to use in graph algorithms.