Package org.biopax.paxtools.query.wrapperL3

Class OrganismFilter

java.lang.Object

org.biopax.paxtools.query.wrapperL3.Filter

org.biopax.paxtools.query.wrapperL3.StringFieldFilter

org.biopax.paxtools.query.wrapperL3.OrganismFilter

public class OrganismFilter
extends StringFieldFilter

Filter by organism. Applied to PhysicalEntity. Checks if their EntityReference is associated with one of the given organisms.

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.query.wrapperL3.StringFieldFilter

emptyOK

Constructor Summary

Constructors

Constructor	Description
OrganismFilter(String[] organism)	Constructor.

Method Summary

Modifier and Type	Method	Description
void	createFieldAccessors()	Creates the accessor from PhysicalEntity to the organism of related EntityReference.

Methods inherited from class org.biopax.paxtools.query.wrapperL3.StringFieldFilter

addAccessor, addValidValue, isEmptyOK, okToTraverse, setEmptyOK

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

OrganismFilter

public OrganismFilter(String[] organism)

Constructor.

Parameters:

organism - organisms to select

Method Details

createFieldAccessors

public void createFieldAccessors()

Creates the accessor from PhysicalEntity to the organism of related EntityReference.

Specified by:

createFieldAccessors in class StringFieldFilter