Package org.biopax.paxtools.query.wrapperL3

package org.biopax.paxtools.query.wrapperL3

Related Packages

Package	Description
org.biopax.paxtools.query	Graph-theoretic querying module in Paxtools is used for identifying paths between molecules or identifying other molecules that is reachable through some specific paths using the BioPAX data model.
org.biopax.paxtools.query.algorithm	This package contains the SIF rules for BioPAX Level 3.
org.biopax.paxtools.query.model	This package contains the SIF rules for BioPAX Level 3.
org.biopax.paxtools.query.wrapperL3undirected

Classes

Class	Description
ControlWrapper	Wrapper for the Control class.
ConversionWrapper	Wrapper for the Conversion class.
DataSourceFilter	Filter by data source.
EdgeL3	Wrapper for links between L3 objects.
EventWrapper	This is the parent wrapper class for both Conversion and TemplateReaction objects.
Filter	This is the base filter class that can be applied to any level 3 element.
GraphL3	Wrapper for L3 Graphs.
OrganismFilter	Filter by organism.
PhysicalEntityWrapper	Wrapper for PhysicalEntity.
StringFieldFilter	This is the base class for filters that are filtering based on values of specific fields of the objects and their related objects.
TemplateReactionWrapper	Wrapper for TemplateReaction class.
UbiqueFilter	Filters out ubiquitous entities, whose IDs are supplied by user.