D F G I O S V

D

DEFAULT_FIELDS - Static variable in class org.biopax.paxtools.search.SearchEngine

DEFAULT_MAX_HITS_PER_PAGE - Static variable in class org.biopax.paxtools.search.SearchEngine

F

FIELD_DATASOURCE - Static variable in class org.biopax.paxtools.search.SearchEngine

FIELD_KEYWORD - Static variable in class org.biopax.paxtools.search.SearchEngine

FIELD_N - Static variable in class org.biopax.paxtools.search.SearchEngine

FIELD_N_PARTICIPANTS - Static variable in class org.biopax.paxtools.search.SearchEngine

FIELD_N_PROCESSES - Static variable in class org.biopax.paxtools.search.SearchEngine

FIELD_NAME - Static variable in class org.biopax.paxtools.search.SearchEngine

FIELD_ORGANISM - Static variable in class org.biopax.paxtools.search.SearchEngine

FIELD_PATHWAY - Static variable in class org.biopax.paxtools.search.SearchEngine

FIELD_TYPE - Static variable in class org.biopax.paxtools.search.SearchEngine

FIELD_URI - Static variable in class org.biopax.paxtools.search.SearchEngine

FIELD_XREFID - Static variable in class org.biopax.paxtools.search.SearchEngine

G

getHits() - Method in class org.biopax.paxtools.search.SearchResult

getMaxHitsPerPage() - Method in class org.biopax.paxtools.search.SearchEngine

Gets the maximum no.

getMaxHitsPerPage() - Method in class org.biopax.paxtools.search.SearchResult

getPage() - Method in class org.biopax.paxtools.search.SearchResult

getTotalHits() - Method in class org.biopax.paxtools.search.SearchResult

I

index() - Method in interface org.biopax.paxtools.search.Indexer

index() - Method in class org.biopax.paxtools.search.SearchEngine

Indexer - Interface in org.biopax.paxtools.search

O

org.biopax.paxtools.search - package org.biopax.paxtools.search

Public interfaces and classes (API) for indexing and full-text searching BioPAX models.

S

search(String, int, Class<? extends BioPAXElement>, String[], String[]) - Method in class org.biopax.paxtools.search.SearchEngine

search(String, int, Class<? extends BioPAXElement>, String[], String[]) - Method in interface org.biopax.paxtools.search.Searcher

Full-text search for BioPAX elements.

SearchEngine - Class in org.biopax.paxtools.search

A full-text searcher/indexer for BioPAX L3 models.

SearchEngine(Model, String) - Constructor for class org.biopax.paxtools.search.SearchEngine

Main Constructor.

SearchEngine.HitAnnotation - Enum in org.biopax.paxtools.search

A Key for the value in a BioPAX element's annotations map where additional information about corresponding search hit will be stored.

Searcher - Interface in org.biopax.paxtools.search

SearchResult - Class in org.biopax.paxtools.search

SearchResult() - Constructor for class org.biopax.paxtools.search.SearchResult

setHits(List<BioPAXElement>) - Method in class org.biopax.paxtools.search.SearchResult

setMaxHitsPerPage(int) - Method in class org.biopax.paxtools.search.SearchEngine

Sets the maximum no.

setMaxHitsPerPage(long) - Method in class org.biopax.paxtools.search.SearchResult

setPage(int) - Method in class org.biopax.paxtools.search.SearchResult

setTotalHits(long) - Method in class org.biopax.paxtools.search.SearchResult

V

valueOf(String) - Static method in enum org.biopax.paxtools.search.SearchEngine.HitAnnotation

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.biopax.paxtools.search.SearchEngine.HitAnnotation

Returns an array containing the constants of this enum type, in the order they are declared.

D F G I O S V