Package org.biopax.paxtools.search

Interface Searcher

All Known Implementing Classes:
SearchEngine
public interface Searcher

  • Method Summary

    Modifier and Type
    Method
    Description
    SearchResult
    search(String query, int page, Class<? extends BioPAXElement> filterByType, String[] datasources, String[] organisms)
    Full-text search for BioPAX elements.

  • Method Details

    • search

      SearchResult search(String query, int page, Class<? extends BioPAXElement> filterByType, String[] datasources, String[] organisms)
      Full-text search for BioPAX elements.
      Parameters:
      query - String (keywords or Lucene query string)
      page - hits page number (when the number of hits exceeds a threshold)
      filterByType - - class filter
      datasources - - filter by datasource
      organisms - - filter by organism
      Returns:
      a bean that contains the list of BioPAX objects (hits) and annotations.