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C

convert(InputStream, OutputStream, boolean) - Method in class org.biopax.paxtools.converter.psi.PsiToBiopax3Converter

Converts the PSI-MI inputStream into BioPAX outputStream.

convert(EntrySet, OutputStream, boolean) - Method in class org.biopax.paxtools.converter.psi.PsiToBiopax3Converter

Converts the PSI interactions from the EntrySet and places into BioPAX output stream.

convertTab(InputStream, OutputStream, boolean) - Method in class org.biopax.paxtools.converter.psi.PsiToBiopax3Converter

Converts the PSI-MITAB inputStream into BioPAX outputStream.

G

getXmlBase() - Method in class org.biopax.paxtools.converter.psi.PsiToBiopax3Converter

O

org.biopax.paxtools.converter.psi - package org.biopax.paxtools.converter.psi

P

PsiToBiopax3Converter - Class in org.biopax.paxtools.converter.psi

The PSIMI 2.5 to BioPAX Level3 converter.

PsiToBiopax3Converter() - Constructor for class org.biopax.paxtools.converter.psi.PsiToBiopax3Converter

Constructor.

PsiToBiopax3Converter(String) - Constructor for class org.biopax.paxtools.converter.psi.PsiToBiopax3Converter

Constructor.

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