org.biopax.paxtools.io.sbgn

Class CommonFeatureStringGenerator

java.lang.Object

org.biopax.paxtools.io.sbgn.CommonFeatureStringGenerator

All Implemented Interfaces:

FeatureDecorator

public class CommonFeatureStringGenerator
extends Object
implements FeatureDecorator

Prepares displayable Stat class to generate labels like "pY@123" for modification features and like x[30 - 122] for fragment features.

Author:

Ozgun Babur

Constructor Summary

Constructors

Constructor and Description
CommonFeatureStringGenerator()

Method Summary

Modifier and Type	Method and Description
org.sbgn.bindings.Glyph.State	createStateVar(EntityFeature ef, org.sbgn.bindings.ObjectFactory factory) Creates State to represent the entity feature.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CommonFeatureStringGenerator

public CommonFeatureStringGenerator()

Method Detail

createStateVar

public org.sbgn.bindings.Glyph.State createStateVar(EntityFeature ef,
                                                    org.sbgn.bindings.ObjectFactory factory)

Creates State to represent the entity feature.

Specified by:

createStateVar in interface FeatureDecorator

Parameters:

ef - feature to represent

factory - factory that can create the State class

Returns:

State representing the feature