org.biopax.paxtools.io.sbgn

Class ListUbiqueDetector

java.lang.Object

org.biopax.paxtools.io.sbgn.ListUbiqueDetector

All Implemented Interfaces:

UbiqueDetector

public class ListUbiqueDetector
extends Object
implements UbiqueDetector

Detects ubiquitous molecules using a given ID set.

Author:

Ozgun Babur

Constructor Summary

Constructors

Constructor and Description
ListUbiqueDetector(Set<String> ubiqueIDs) Contructor with the Ubique IDs.

Method Summary

Modifier and Type	Method and Description
boolean	isUbique(PhysicalEntity pe) Checks if the ID of the PhysicalEntity is in the set.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ListUbiqueDetector

public ListUbiqueDetector(Set<String> ubiqueIDs)

Contructor with the Ubique IDs.

Parameters:

ubiqueIDs - IDs of ubiques

Method Detail

isUbique

public boolean isUbique(PhysicalEntity pe)

Checks if the ID of the PhysicalEntity is in the set.

Specified by:

isUbique in interface UbiqueDetector

Parameters:

pe - PhysicalEntity to check

Returns:

true if ubique