Package org.biopax.paxtools.io.sbgn

This package contains a BioPAX to SBGN-PD converter and associated classes.

See: Description

Interface Summary

Interface	Description
FeatureDecorator	Generates a State class representing an entity feature.
UbiqueDetector	Interface for ubiquitous molecule detection.

Class Summary

Class	Description
CommonFeatureStringGenerator	Prepares displayable Stat class to generate labels like "pY@123" for modification features and like x[30 - 122] for fragment features.
L3ToSBGNPDConverter	This class converts BioPAX L3 model into SBGN PD.
ListUbiqueDetector	Detects ubiquitous molecules using a given ID set.
SBGNLayoutManager	SBGNLayoutManager Class: Applies layout by using ChiLay to Sbgn graph generated by paxtools.
VCompound	VCompound Class
VNode	VNode Class

Package org.biopax.paxtools.io.sbgn Description

This package contains a BioPAX to SBGN-PD converter and associated classes. It can also optionally perform graph layout.