org.biopax.paxtools.io.sbgn

Class ListUbiqueDetector

java.lang.Object

org.biopax.paxtools.io.sbgn.ListUbiqueDetector

All Implemented Interfaces:

UbiqueDetector

public class ListUbiqueDetector
extends Object
implements UbiqueDetector

Detects ubiquitous molecules using a given ID set.

Author:

Ozgun Babur

Constructor Summary

Constructors

Constructor and Description
ListUbiqueDetector(Set<String> uris) Contructor.

Method Summary

Modifier and Type	Method and Description
boolean	isUbique(Entity e) Checks if the ID of the PhysicalEntity is in the set.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ListUbiqueDetector

public ListUbiqueDetector(Set<String> uris)

Contructor.

Parameters:

uris - URIs of ubiques

Method Detail

isUbique

public boolean isUbique(Entity e)

Checks if the ID of the PhysicalEntity is in the set.

Specified by:

isUbique in interface UbiqueDetector

Parameters:

e - PhysicalEntity or Gene to check

Returns:

true if ubique