Package org.biopax.paxtools.io.sbgn

package org.biopax.paxtools.io.sbgn

This package contains a BioPAX to SBGN-PD converter and associated classes. It can also optionally perform graph layout (COSE).

Related Packages

Package	Description
org.biopax.paxtools.io.sbgn.idmapping	This package contains the SIF rules for BioPAX Level 3.

Class	Description
FeatureDecorator	Generates a State class representing an entity feature.
L3ToSBGNPDConverter	This class converts BioPAX L3 model into SBGN PD (SBGN-ML XML).
ListUbiqueDetector	Detects ubiquitous molecules using a given ID set.
UbiqueDetector	Interface for ubiquitous molecule detection.