org.biopax.paxtools.io.sif

Class InteractionSet

java.lang.Object

java.util.AbstractCollection<E>

java.util.AbstractSet<E>

java.util.HashSet<E>

org.biopax.paxtools.util.AccessibleSet<SimpleInteraction>

org.biopax.paxtools.io.sif.InteractionSet

All Implemented Interfaces:

Serializable, Cloneable, Iterable<SimpleInteraction>, Collection<SimpleInteraction>, Set<SimpleInteraction>

Direct Known Subclasses:

InteractionSetL3

public class InteractionSet
extends AccessibleSet<SimpleInteraction>

This is a set of binary interactions. When a new interactions is added, if the pair already exists, only the mediators are updated with new information.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
InteractionSet()

Method Summary

Modifier and Type	Method and Description
boolean	add(SimpleInteraction simpleInteraction) If the interaction already exists, mediators are updated with merging.

Methods inherited from class org.biopax.paxtools.util.AccessibleSet

access

Methods inherited from class java.util.HashSet

clear, clone, contains, isEmpty, iterator, remove, size, spliterator

Methods inherited from class java.util.AbstractSet

equals, hashCode, removeAll

Methods inherited from class java.util.AbstractCollection

addAll, containsAll, retainAll, toArray, toArray, toString

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Set

addAll, containsAll, equals, hashCode, removeAll, retainAll, toArray, toArray

Methods inherited from interface java.util.Collection

parallelStream, removeIf, stream

Methods inherited from interface java.lang.Iterable

forEach

Constructor Detail

InteractionSet

public InteractionSet()

Method Detail

add

public boolean add(SimpleInteraction simpleInteraction)

If the interaction already exists, mediators are updated with merging.

Specified by:

add in interface Collection<SimpleInteraction>

Specified by:

add in interface Set<SimpleInteraction>

Overrides:

add in class HashSet<SimpleInteraction>

Parameters:

simpleInteraction - interaction to add

Returns:

always true