Uses of Package
org.biopax.paxtools.io.sif

Packages that use org.biopax.paxtools.io.sif

Package	Description
org.biopax.paxtools.io.sif	This package contains methods and algorithms for reducing BioPAX to Simple Interaction Format.
org.biopax.paxtools.io.sif.level2
org.biopax.paxtools.io.sif.level3	This package contains the SIF rules for BioPAX Level 3.

Classes in org.biopax.paxtools.io.sif used by org.biopax.paxtools.io.sif

Class and Description
BinaryInteractionType This class holds the description, tag (used in SIF file), the information if the interaction is directed for the relevant binary interaction types.
InteractionRule This interface defines a rule which can be run on BioPAX model to derive simple interactions.
InteractionSet This is a set of binary interactions.
SimpleInteraction This class implements a directed binary interaction between two entities.

Classes in org.biopax.paxtools.io.sif used by org.biopax.paxtools.io.sif.level2

Class and Description
BinaryInteractionType This class holds the description, tag (used in SIF file), the information if the interaction is directed for the relevant binary interaction types.
InteractionRule This interface defines a rule which can be run on BioPAX model to derive simple interactions.
InteractionSet This is a set of binary interactions.

Classes in org.biopax.paxtools.io.sif used by org.biopax.paxtools.io.sif.level3

Class and Description
BinaryInteractionType This class holds the description, tag (used in SIF file), the information if the interaction is directed for the relevant binary interaction types.
InteractionRule This interface defines a rule which can be run on BioPAX model to derive simple interactions.
InteractionSet This is a set of binary interactions.