- genotype(BrAPIListValue) - Method in class org.brapi.v2.model.geno.BrAPICall
-
- genotypeLikelihood(List<Double>) - Method in class org.brapi.v2.model.geno.BrAPICall
-
- genotypeMetadata(List<BrAPICallGenotypeMetadata>) - Method in class org.brapi.v2.model.geno.BrAPICall
-
- genotypeValue(String) - Method in class org.brapi.v2.model.geno.BrAPICall
-
- genus(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
- genus(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
- genus(List<String>) - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
- genus(List<String>) - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
- geoCoordinates(BrApiGeoJSON) - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitPosition
-
- georeferencingMethod(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingSite
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.geno.BrAPIReferenceSetSourceGermplasm
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.geno.BrAPIReferenceSourceGermplasm
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.geno.BrAPISample
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPICrossParent
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttributeValue
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeParents
-
Deprecated.
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeRelative
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeSibling
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeSiblings
-
Deprecated.
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPIProgenyNode
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPIProgenyNodeProgeny
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
Deprecated.
- germplasmDbId(String) - Method in class org.brapi.v2.model.germ.BrAPISeedLotContentMixture
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
- germplasmDbId(String) - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
- germplasmDbIds(List<String>) - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
- germplasmName(String) - Method in class org.brapi.v2.model.geno.BrAPIReferenceSetSourceGermplasm
-
- germplasmName(String) - Method in class org.brapi.v2.model.geno.BrAPIReferenceSourceGermplasm
-
- germplasmName(String) - Method in class org.brapi.v2.model.germ.BrAPICrossParent
-
- germplasmName(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
- germplasmName(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttributeValue
-
- germplasmName(String) - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
- germplasmName(String) - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeParents
-
Deprecated.
- germplasmName(String) - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeRelative
-
- germplasmName(String) - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeSibling
-
- germplasmName(String) - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeSiblings
-
Deprecated.
- germplasmName(String) - Method in class org.brapi.v2.model.germ.BrAPIProgenyNode
-
- germplasmName(String) - Method in class org.brapi.v2.model.germ.BrAPIProgenyNodeProgeny
-
- germplasmName(String) - Method in class org.brapi.v2.model.germ.BrAPISeedLotContentMixture
-
- germplasmName(String) - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
- germplasmName(String) - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
- germplasmNames(List<String>) - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
- germplasmOrigin(List<BrAPIGermplasmOrigin>) - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
- germplasmPreprocessing(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
- germplasmPUI(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
- germplasmPUI(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasmDonors
-
Deprecated.
- germplasmPUI(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
- germplasmPUI(String) - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
- germplasmPUIs(List<String>) - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
- germplasmPUIs(List<String>) - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
- germplasmPUIs(List<String>) - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
- getAbbreviation() - Method in class org.brapi.v2.model.core.BrAPILocation
-
An abbreviation which represents this location
- getAbbreviation() - Method in class org.brapi.v2.model.core.BrAPIProgram
-
An abbreviation which represents this program
- getAbbreviation() - Method in class org.brapi.v2.model.germ.BrAPIBreedingMethod
-
an abbreviation for the name of this breeding method
- getAbbreviations() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
A list of shortened human readable names for a set of Locations
- getAbbreviations() - Method in class org.brapi.v2.model.core.request.BrAPIProgramSearchRequest
-
An abbreviation of a program to search for
- getAccession() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
If set, return the reference sets for which the `accession` matches this string (case-sensitive, exact match).
- getAccessionNames() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (ACCENAME) 11.
- getAccessionNumber() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
This is the unique identifier for accessions within a genebank, and is
assigned when a sample is entered into the genebank collection
- getAccessionNumber() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (ACCENUMB) 2.
- getAccessionNumbers() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
A collection of unique identifiers for materials or germplasm within a
genebank MCPD (v2.1) (ACCENUMB) 2.
- getAccessionNumbers() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
A collection of unique identifiers for materials or germplasm within a genebank MCPD (v2.1) (ACCENUMB) 2.
- getAccessions() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
If specified, return the references for which the `accession` matches this string (case-sensitive, exact match).
- getAcquisitionDate() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
The date this germplasm was acquired by the genebank MCPD (v2.1) (ACQDATE)
12.
- getAcquisitionDate() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (ACQDATE) 12.
- getAcquisitionSourceCode() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (COLLSRC) 21.
- getAdditionalInfo() - Method in class org.brapi.v2.model.core.BrAPIListBaseFields
-
Additional arbitrary info
- getAdditionalInfo() - Method in interface org.brapi.v2.model.core.BrAPIListBaseFieldsInterface
-
- getAdditionalInfo() - Method in class org.brapi.v2.model.core.BrAPILocation
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.core.BrAPIPerson
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.core.BrAPIProgram
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.core.BrAPITrial
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPICall
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPICallSet
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPILinkageGroup
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPIMarkerPosition
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPIPlate
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSet
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPISample
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPIVariantSet
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPIVendorResultFile
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.BrAPIVendorSpecification
-
Additional arbitrary information specific to a particular Vendor.
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateNewRequest
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.germ.BrAPICross
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.germ.BrAPICrossingProject
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
A free space containing any additional information related to a particular
object.
- getAdditionalInfo() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttributeValue
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
A free space containing any additional information related to a particular object.
- getAdditionalInfo() - Method in class org.brapi.v2.model.germ.BrAPIPlannedCross
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
A free space containing any additional information related to a particular
object.
- getAdditionalInfo() - Method in class org.brapi.v2.model.germ.BrAPISeedLotTransaction
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.pheno.BrAPIEvent
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
Get additionalInfo
- getAdditionalInfo() - Method in class org.brapi.v2.model.pheno.BrAPIMethod
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.pheno.BrAPIOntology
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.pheno.BrAPIScale
-
Additional arbitrary info
- getAdditionalInfo() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
Additional arbitrary info
- getAlternate_bases() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
Deprecated.
- getAlternateBases() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
The bases that appear instead of the reference bases.
- getAlternateIDs() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (OTHERNUMB) 24.
- getAlternativeAbbreviations() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
Other frequent abbreviations of the trait, if any.
- getAltitudeMax() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
The maximum altitude to search for
- getAltitudeMin() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
The minimum altitude to search for
- getAmount() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
The current balance of the amount of material in a BrAPISeedLot.
- getAmount() - Method in class org.brapi.v2.model.germ.BrAPISeedLotTransaction
-
The amount of units being transfered.
- getAnalysis() - Method in class org.brapi.v2.model.geno.BrAPIVariantSet
-
Set of Analysis descriptors for this VariantSet
- getAnalysisDbId() - Method in class org.brapi.v2.model.geno.BrAPIAnalysis
-
Unique identifier for this analysis description
- getAnalysisName() - Method in class org.brapi.v2.model.geno.BrAPIAnalysis
-
A human readable name for this analysis
- getAncestralData() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (ANCEST) 20.
- getAssemblyPUI() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSet
-
The remaining information is about the source of the sequences Public id of this reference set, such as `GRCH_37`.
- getAssemblyPUI() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
If set, return the reference sets for which the `assemblyId` matches this string (case-sensitive, exact match).
- getAtContext() - Method in class org.brapi.v2.model.BrAPIAcceptedSearchResponse
-
Get _atContext
- getAtContext() - Method in class org.brapi.v2.model.geno.response.BrAPIAlleleMatrixResponse
-
Get _atContext
- getAtContext() - Method in class org.brapi.v2.model.geno.response.BrAPIPlateListResponse
-
Get _atContext
- getAtContext() - Method in class org.brapi.v2.model.geno.response.BrAPIPlateSingleResponse
-
Get _atContext
- getAtContext() - Method in class org.brapi.v2.model.germ.response.BrAPIPedigreeListResponse
-
Get _atContext
- getAtContext() - Method in class org.brapi.v2.model.pheno.response.BrAPIImageDeleteResponse
-
Get _atContext
- getAtContext() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationDeleteResponse
-
Get _atContext
- getAtContext() - Method in class org.brapi.v2.model.pheno.response.BrAPIOntologySingleResponse
-
Get _atContext
- getAttribute() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
A trait can be decomposed as \"Trait\" = \"Entity\" + \"Attribute\", the
attribute is the observed feature (or characteristic) of the entity e.g., for
\"grain colour\", attribute = \"colour\"
- getAttributeCategories() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
General category for the attribute.
- getAttributeCategory() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
General category for the attribute.
- getAttributeDbId() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
The ID which uniquely identifies this attribute within the given database
server
- getAttributeDbId() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttributeValue
-
The ID which uniquely identifies this attribute within the given database
server
- getAttributeDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
List of Germplasm Attribute IDs to search for
- getAttributeDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of Germplasm Attribute IDs to search for
- getAttributeDescription() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
A human readable description of this attribute
- getAttributeName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
A human readable name for this attribute
- getAttributeName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttributeValue
-
- getAttributeNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
List of human readable Germplasm Attribute names to search for
- getAttributeNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of human readable Germplasm Attribute names to search for
- getAttributePUI() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
The Permanent Unique Identifier of an Attribute, usually in the form of a URI
- getAttributePUI() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
The Permanent Unique Identifier of a Trait Attribute, usually in the form of
a URI <br/>A trait can be decomposed as \"Trait\" =
\"Entity\" + \"Attribute\", the attribute is the observed
feature (or characteristic) of the entity e.g., for \"grain
colour\", attribute = \"colour\"
- getAttributePUIs() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
The Permanent Unique Identifier of an Attribute, usually in the form of a URI
- getAttributeValueDbId() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttributeValue
-
The ID which uniquely identifies this attribute value within the given database server
- getAttributeValueDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of Germplasm Attribute Value IDs to search for
- getAuthors() - Method in class org.brapi.v2.model.pheno.BrAPIOntology
-
Ontology's list of authors (no specific format)
- getAvailableFormats() - Method in class org.brapi.v2.model.geno.BrAPIVariantSet
-
When the data for a VariantSet is retrieved, it can be retrieved in a variety of data formats and file formats.
- getBibliographicalReference() - Method in class org.brapi.v2.model.pheno.BrAPIMethod
-
Bibliographical reference describing the method.
- getBinomialNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
List of the full binomial name (scientific name) to identify a germplasm
- getBinomialNames() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
List of the full binomial name (scientific name) to identify a germplasm
- getBiologicalStatusOfAccessionCode() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
MCPD (v2.1) (SAMPSTAT) 19.
- getBiologicalStatusOfAccessionCode() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (SAMPSTAT) 19.
- getBiologicalStatusOfAccessionDescription() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
Supplemental text description for 'biologicalStatusOfAccessionCode'
- getBrapiValue() - Method in interface org.brapi.v2.model.BrAPIEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.BrAPIOntologyReferenceTypeEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.BrAPISortBy
-
- getBrapiValue() - Method in enum org.brapi.v2.model.BrAPISortOrder
-
- getBrapiValue() - Method in enum org.brapi.v2.model.BrAPIWSMIMEDataTypes
-
- getBrapiValue() - Method in enum org.brapi.v2.model.core.BrAPIListTypes
-
- getBrapiValue() - Method in enum org.brapi.v2.model.core.BrAPIService.MethodsEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.core.BrAPIService.VersionsEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.geno.BrAPIDataTypeEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.geno.BrAPIDimensionEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.geno.BrAPIFileFormatEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.geno.BrAPIGenoFileDataFormatEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.geno.BrAPIPlateFormat
-
- getBrapiValue() - Method in enum org.brapi.v2.model.geno.BrAPISampleTypeEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.geno.BrAPIVendorServicePlatformMarkerTypeEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.geno.response.BrAPIVendorOrderStatusResponseResult.StatusEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.germ.BrAPIBiologicalStatusOfAccessionCode
-
- getBrapiValue() - Method in enum org.brapi.v2.model.germ.BrAPICrossType
-
- getBrapiValue() - Method in enum org.brapi.v2.model.germ.BrAPIGermplasmStorageTypesEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.germ.BrAPIParentType
-
- getBrapiValue() - Method in enum org.brapi.v2.model.germ.BrAPIPlannedCrossStatus
-
- getBrapiValue() - Method in enum org.brapi.v2.model.pheno.BrAPIEntryTypeEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.pheno.BrAPIObservationTableHeaderRowEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.pheno.BrAPIPositionCoordinateTypeEnum
-
- getBrapiValue() - Method in enum org.brapi.v2.model.pheno.BrAPITraitDataType
-
- getBreedingInstitutes() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
Get breedingInstitutes
- getBreedingMethodDbId() - Method in class org.brapi.v2.model.germ.BrAPIBreedingMethod
-
the unique identifier for this breeding method
- getBreedingMethodDbId() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
The unique identifier for the breeding method used to create this germplasm
- getBreedingMethodDbId() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
The unique identifier for the breeding method used to create this germplasm
- getBreedingMethodName() - Method in class org.brapi.v2.model.germ.BrAPIBreedingMethod
-
human readable name of the breeding method
- getBreedingMethodName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
The unique identifier for the breeding method used to create this germplasm
- getBreedingMethodName() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
The human readable name of the breeding method used to create this germplasm
- getCalls() - Method in class org.brapi.v2.model.core.BrAPIServerInfo
-
Array of available calls on this server
- getCallSetCount() - Method in class org.brapi.v2.model.geno.BrAPIVariantSet
-
The number of CallSets included in this VariantSet
- getCallSetDbId() - Method in class org.brapi.v2.model.geno.BrAPICall
-
The ID of the call set this variant call belongs to.
- getCallSetDbId() - Method in class org.brapi.v2.model.geno.BrAPICallSet
-
The call set ID.
- getCallSetDbIds() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrix
-
A list of unique identifiers for the CallSets contained in the matrix response.
- getCallSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
A list of IDs which uniquely identify `CallSets` within the given database server
- getCallSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
Only return call sets with these DbIds (case-sensitive, exact match).
- getCallSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPICallsSearchRequest
-
The CallSet to search.
- getCallSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsExtractRequest
-
The CallSet to search.
- getCallSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
The CallSet to search.
- getCallSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
- getCallSetName() - Method in class org.brapi.v2.model.geno.BrAPICall
-
The name of the call set this variant call belongs to.
- getCallSetName() - Method in class org.brapi.v2.model.geno.BrAPICallSet
-
The call set name.
- getCallSetNames() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
Only return call sets with these names (case-sensitive, exact match).
- getCategories() - Method in class org.brapi.v2.model.pheno.BrAPIScaleValidValues
-
List of possible values with optional labels
- getCiend() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
Similar to \"cipos\", but for the variant's end position (which is derived
from start + svlen).
- getCipos() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
In the case of structural variants, start and end of the variant may not be
known with an exact base position.
- getClientId() - Method in class org.brapi.v2.model.geno.BrAPIVendorOrder
-
A unique, alpha-numeric ID which identifies the client to the vendor.
- getClientId() - Method in class org.brapi.v2.model.geno.BrAPIVendorPlateSubmission
-
A unique, alpha-numeric ID which identifies the client to the vendor.
- getClientId() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorPlateSubmissionRequest
-
A unique, alpha-numeric ID which identifies the client to the vendor.
- getClientPlateBarcode() - Method in class org.brapi.v2.model.geno.BrAPIVendorPlate
-
(Optional) The value of the bar code attached to this plate
- getClientPlateBarcode() - Method in class org.brapi.v2.model.geno.BrAPIVendorPlateSubmissionPlates
-
(Optional) The value of the bar code attached to this plate
- getClientPlateId() - Method in class org.brapi.v2.model.geno.BrAPIVendorPlate
-
The ID which uniquely identifies this plate to the client making the request
- getClientPlateId() - Method in class org.brapi.v2.model.geno.BrAPIVendorPlateSubmissionPlates
-
The ID which uniquely identifies this plate to the client making the request
- getClientSampleBarCode() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
(Optional) The value of the bar code attached to this sample
- getClientSampleBarCode() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
(Optional) The value of the bar code attached to this sample
- getClientSampleId() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
The ID which uniquely identifies this sample to the client making the request
- getClientSampleId() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
The ID which uniquely identifies this sample to the client making the request
- getClientSampleIds() - Method in class org.brapi.v2.model.geno.BrAPIVendorResultFile
-
The list of sampleDbIds included in the file
- getCode() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmStorageTypes
-
- getCode() - Method in class org.brapi.v2.model.pheno.BrAPIEventParameters
-
The shortened code name of an event parameter <br>ICASA
\"Code_Display\"
- getCollectingDate() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfo
-
MCPD (v2.1) (COLLDATE) 17.
- getCollectingInfo() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
Get collectingInfo
- getCollectingInstitutes() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfo
-
Institutes which collected the sample
- getCollectingMissionIdentifier() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfo
-
MCPD (v2.1) (COLLMISSID) 4.2 Identifier of the collecting mission used by the Collecting Institute (4 or 4.1) (e.g.
- getCollectingNumber() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfo
-
MCPD (v2.1) (COLLNUMB) 3.
- getCollectingSite() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfo
-
Get collectingSite
- getCollection() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
A specific panel/collection/population name this germplasm belongs to.
- getCollections() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
A specific panel/collection/population name this germplasm belongs to.
- getCollections() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
A specific panel/collection/population name this germplasm belongs to.
- getCollector() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
The name or identifier of the entity which collected the observation
- getColumn() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The Column identifier for this samples location in the plate
minimum: 1
maximum: 12
- getColumn() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
The Column identifier for this samples location in the plate
minimum: 1
maximum: 12
- getColumn() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The Column identifier for this `Sample` location in the `Plate`
minimum: 1
maximum: 12
- getColumn() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
The Column identifier for this samples location in the plate
minimum: 1
maximum: 12
- getComments() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
Additional comments
- getComments() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
Generic comments about this sample for the vendor
- getComments() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
Generic comments about this sample for the vendor
- getCommonCropName() - Method in class org.brapi.v2.model.core.BrAPIProgram
-
Common name for the crop which this program is for
- getCommonCropName() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
Common name for the crop associated with this study
- getCommonCropName() - Method in class org.brapi.v2.model.core.BrAPITrial
-
Common name for the crop associated with this trial
- getCommonCropName() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
The common name of the crop
- getCommonCropName() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
Common name for the crop
- getCommonCropName() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSet
-
Common name for the crop
- getCommonCropName() - Method in class org.brapi.v2.model.germ.BrAPICrossingProject
-
the common name of a crop (for multi-crop systems)
- getCommonCropName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
- getCommonCropName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Crop name (examples: \"Maize\", \"Wheat\")
- getCommonCropName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (CROPNAME) 10.
- getCommonCropName() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Crop name (examples: \"Maize\", \"Wheat\")
- getCommonCropNames() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name
of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name
of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name
of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.core.request.BrAPIProgramSearchRequest
-
Common name for the crop which this program is for
- getCommonCropNames() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
Common name for the crop which this program is for
- getCommonCropNames() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
Common name for the crop which this program is for
- getCommonCropNames() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name
of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
- getCommonCropNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name
of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name
of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
A program identifier to search for
- getCommonCropNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name
of the organism being researched.
- getCommonCropNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The BrAPI Common Crop Name is the simple, generalized, widely accepted name
of the organism being researched.
- getConcentration() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
Get concentration
- getConcentration() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
Get concentration
- getContactDbId() - Method in class org.brapi.v2.model.core.BrAPIContact
-
The ID which uniquely identifies this contact MIAPPE V1.1 (DM-33) Person ID - An identifier for the data submitter.
- getContactDbIds() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
List of contact entities associated with this trial
- getContactEmail() - Method in class org.brapi.v2.model.core.BrAPIServerInfo
-
A contact email address for this server management
- getContacts() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
List of contact entities associated with this study
- getContacts() - Method in class org.brapi.v2.model.core.BrAPITrial
-
List of contact entities associated with this trial
- getContentMixture() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
The mixture of germplasm present in the seed lot.
- getContentTypes() - Method in class org.brapi.v2.model.core.BrAPIService
-
- getContextOfUse() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Indication of how trait is routinely used.
- getContextOfUse() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Indication of how trait is routinely used.
- getCoordinateDescription() - Method in class org.brapi.v2.model.core.BrAPILocation
-
Describes the precision and landmarks of the coordinate values used for this
location.
- getCoordinates() - Method in class org.brapi.v2.model.core.BrAPILocation
-
Get coordinates
- getCoordinates() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
Get coordinates
- getCoordinates() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmOrigin
-
Get coordinates
- getCoordinateUncertainty() - Method in class org.brapi.v2.model.core.BrAPILocation
-
Uncertainty associated with the coordinates in meters.
- getCoordinateUncertainty() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingSite
-
MCPD (v2.1) (COORDUNCERT) 15.5 Uncertainty associated with the coordinates in metres.
- getCoordinateUncertainty() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmOrigin
-
Uncertainty associated with the coordinates in meters.
- getCopyright() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
The copyright information of this image.
- getCopyright() - Method in class org.brapi.v2.model.pheno.BrAPIOntology
-
Ontology copyright
- getCountryCode() - Method in class org.brapi.v2.model.core.BrAPILocation
-
[ISO_3166-1_alpha-3](https://en.wikipedia.org/wiki/ISO_3166-1_alpha-3) spec
MIAPPE V1.1 (DM-17) Geographic location (country) - The country where the
experiment took place, either as a full name or preferably as a 2-letter
code.
- getCountryCodes() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
[ISO_3166-1_alpha-3](https://en.wikipedia.org/wiki/ISO_3166-1_alpha-3) spec
- getCountryName() - Method in class org.brapi.v2.model.core.BrAPILocation
-
The full name of the country where this location is MIAPPE V1.1 (DM-17)
Geographic location (country) - The country where the experiment took place,
either as a full name or preferably as a 2-letter code.
- getCountryNames() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
The full name of the country to search for
- getCountryOfOrigin() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (ORIGCTY) 13.
- getCountryOfOriginCode() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
3-letter ISO 3166-1 code of the country in which the sample was originally
collected MCPD (v2.1) (ORIGCTY) 13.
- getCreated() - Method in class org.brapi.v2.model.geno.BrAPIAnalysis
-
The time at which this record was created, in ISO 8601 format.
- getCreated() - Method in class org.brapi.v2.model.geno.BrAPICallSet
-
The date this call set was created
- getCreated() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
The timestamp when this variant was created.
- getCreatedDate() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
The time stamp for when this seed lot was created
- getCrossAttributeName() - Method in class org.brapi.v2.model.germ.BrAPICrossCrossAttributes
-
the human readable name of a cross attribute
- getCrossAttributes() - Method in class org.brapi.v2.model.germ.BrAPICross
-
Set of custom attributes associated with a cross
- getCrossAttributeValue() - Method in class org.brapi.v2.model.germ.BrAPICrossCrossAttributes
-
the value of a cross attribute
- getCrossDbId() - Method in class org.brapi.v2.model.germ.BrAPICross
-
the unique identifier for a cross
- getCrossDbId() - Method in class org.brapi.v2.model.germ.BrAPISeedLotContentMixture
-
The unique DbId for a cross contained in this seed lot
- getCrossDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The unique identifier for the originating Seed Lot
- getCrossingProjectDbId() - Method in class org.brapi.v2.model.germ.BrAPICross
-
the unique identifier for a crossing project
- getCrossingProjectDbId() - Method in class org.brapi.v2.model.germ.BrAPICrossingProject
-
the unique identifier for a crossing project
- getCrossingProjectDbId() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
The crossing project used to generate this germplasm
- getCrossingProjectDbId() - Method in class org.brapi.v2.model.germ.BrAPIPlannedCross
-
the unique identifier for a crossing project
- getCrossingProjectDescription() - Method in class org.brapi.v2.model.germ.BrAPICrossingProject
-
the description for a crossing project
- getCrossingProjectName() - Method in class org.brapi.v2.model.germ.BrAPICross
-
the human readable name for a crossing project
- getCrossingProjectName() - Method in class org.brapi.v2.model.germ.BrAPICrossingProject
-
the human readable name for a crossing project
- getCrossingProjectName() - Method in class org.brapi.v2.model.germ.BrAPIPlannedCross
-
the human readable name for a crossing project
- getCrossingYear() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
The year the parents were originally crossed
- getCrossName() - Method in class org.brapi.v2.model.germ.BrAPICross
-
the human readable name for a cross
- getCrossName() - Method in class org.brapi.v2.model.germ.BrAPISeedLotContentMixture
-
The human readable name for a cross contained in this seed lot
- getCrossName() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The unique identifier for the originating Seed Lot
- getCrossType() - Method in class org.brapi.v2.model.germ.BrAPICross
-
the type of cross
- getCrossType() - Method in class org.brapi.v2.model.germ.BrAPIPlannedCross
-
the type of cross
- getCulturalPractices() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
MIAPPE V1.1 (DM-28) Cultural practices - General description of the cultural
practices of the study.
- getCurrentPage() - Method in class org.brapi.v2.model.BrAPIIndexPagination
-
The index number for the returned page of data.
- getCurrentPage() - Method in class org.brapi.v2.model.BrAPIPagination
-
- getCurrentPage() - Method in class org.brapi.v2.model.BrAPITokenPagination
-
- getCurrentPageToken() - Method in class org.brapi.v2.model.BrAPITokenPagination
-
- getData() - Method in interface org.brapi.v2.model.BrAPIResponseResult
-
- getData() - Method in class org.brapi.v2.model.core.request.BrAPIListNewRequest
-
The list of DbIds contained in this list
- getData() - Method in class org.brapi.v2.model.core.response.BrAPICommonCropNamesResponseResult
-
array of crop names available on the server
- getData() - Method in class org.brapi.v2.model.core.response.BrAPIListDetails
-
The list of DbIds contained in this list
- getData() - Method in class org.brapi.v2.model.core.response.BrAPIListsListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.core.response.BrAPILocationListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.core.response.BrAPIPersonListResponseResult
-
Array of people
- getData() - Method in class org.brapi.v2.model.core.response.BrAPIProgramListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.core.response.BrAPISeasonListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.core.response.BrAPIStudyListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.core.response.BrAPIStudyTypesResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.core.response.BrAPITrialListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPICallSetsListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPICallsListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPIGenomeMapListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPILinkageGroupListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPIMarkerPositionListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPIPlateListResponseResult
-
The `data` array is part of the BrAPI standard List Response JSON container.
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPIReferenceSetsListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPIReferencesListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPISampleListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPIVariantSetsListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPIVariantsListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorOrderListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorPlateListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorResultFileListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.germ.response.BrAPIBreedingMethodListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.germ.response.BrAPICrossesListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.germ.response.BrAPICrossingProjectsListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeCategoryListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeValueListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.germ.response.BrAPIPedigreeListResponseResult
-
The `data` array is part of the BrAPI standard List Response JSON container.
- getData() - Method in class org.brapi.v2.model.germ.response.BrAPIPlannedCrossesListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.germ.response.BrAPISeedLotListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.germ.response.BrAPISeedLotTransactionListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.pheno.BrAPIObservationTable
-
Matrix of observation data recorded for different observation variables across different observation units
- getData() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitTable
-
Matrix of observation data recorded for different observation variables across different observation units
- getData() - Method in class org.brapi.v2.model.pheno.response.BrAPIEventsResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.pheno.response.BrAPIImageListResponseResult
-
Array of image meta data
- getData() - Method in class org.brapi.v2.model.pheno.response.BrAPIMethodListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationLevelListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationUnitListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationVariableListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.pheno.response.BrAPIOntologyListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.pheno.response.BrAPIScaleListResponseResult
-
Get data
- getData() - Method in class org.brapi.v2.model.pheno.response.BrAPITraitListResponseResult
-
Get data
- getDatafiles() - Method in class org.brapi.v2.model.BrAPIMetadata
-
The datafiles contains a list of file URLs and metadata.
- getDataFormat() - Method in class org.brapi.v2.model.BrAPIDataLink
-
The structure of the data within a file.
- getDataFormat() - Method in class org.brapi.v2.model.geno.BrAPIAvailableFormat
-
dataFormat defines the structure of the data within a file (ie DartSeq, VCF, Hapmap, tabular, etc)
- getDataFormat() - Method in class org.brapi.v2.model.geno.BrAPIVariantSetAvailableFormats
-
dataFormat defines the structure of the data within a file (ie DartSeq, VCF, Hapmap, tabular, etc)
- getDataLinks() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
List of links to extra data files associated with this study.
- getDataMatrices() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrix
-
The 'dataMatrices' are an array of matrix objects that hold the allele data and associated metadata.
- getDataMatrix() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrixDataMatrices
-
The two dimensional array of data, providing the allele matrix or an additional layer of metadata associated with each genotype value.
- getDataMatrixAbbreviation() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrixDataMatrices
-
The abbreviated code of the field represented in this data matrix.
- getDataMatrixAbbreviations() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
`dataMatrixAbbreviations` is a comma seperated list of abbreviations (ie 'GT', 'RD' etc).
- getDataMatrixName() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrixDataMatrices
-
The name of the field represented in this data matrix.
- getDataMatrixNames() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
`dataMatrixNames` is a list of names (ie 'Genotype', 'Read Depth' etc).
- getDatasetAuthorships() - Method in class org.brapi.v2.model.core.BrAPITrial
-
License and citation information for the data in this trial
- getDatasetPUI() - Method in class org.brapi.v2.model.core.BrAPITrialDatasetAuthorships
-
Get datasetPUI
- getDataType() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrixDataMatrices
-
The type of field represented in this data matrix.
- getDataType() - Method in class org.brapi.v2.model.geno.BrAPICallGenotypeMetadata
-
The type of field represented in this Genotype Field.
- getDataType() - Method in class org.brapi.v2.model.geno.BrAPIVariantSetMetadataFields
-
The type of field represented in this Genotype Field.
- getDataType() - Method in class org.brapi.v2.model.pheno.BrAPIScale
-
Get dataType
- getDataTypes() - Method in class org.brapi.v2.model.core.BrAPIService
-
Deprecated.
- getDataTypes() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
List of scale data types to filter search results
- getDataTypes() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of scale data types to filter search results
- getDataTypes() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
List of scale data types to filter search results
- getDate() - Method in class org.brapi.v2.model.pheno.BrAPIEvent
-
Deprecated.
- getDateCreated() - Method in class org.brapi.v2.model.core.BrAPIListBaseFields
-
Timestamp when the entity was first created
- getDateCreated() - Method in interface org.brapi.v2.model.core.BrAPIListBaseFieldsInterface
-
- getDateCreatedRangeEnd() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
Get dateCreatedRangeEnd
- getDateCreatedRangeStart() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
Get dateCreatedRangeStart
- getDateModified() - Method in class org.brapi.v2.model.core.BrAPIListBaseFields
-
Timestamp when the entity was last updated
- getDateModified() - Method in interface org.brapi.v2.model.core.BrAPIListBaseFieldsInterface
-
- getDateModifiedRangeEnd() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
Get dateModifiedRangeEnd
- getDateModifiedRangeStart() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
Get dateModifiedRangeStart
- getDecimalPlaces() - Method in class org.brapi.v2.model.pheno.BrAPIScale
-
For numerical, number of decimal places to be reported
- getDefaultDisplayName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
Human readable name used for display purposes
- getDefaultDisplayName() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
Human readable name used for display purposes
- getDefaultValue() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Variable default value.
- getDefaultValue() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Variable default value.
- getDescription() - Method in class org.brapi.v2.model.BrAPIDataLink
-
The general description of this data link
- getDescription() - Method in class org.brapi.v2.model.core.BrAPIEnvironmentParameter
-
Human-readable value of the environment parameter (defined above) constant within the experiment
- getDescription() - Method in class org.brapi.v2.model.core.BrAPIPerson
-
description of this person
- getDescription() - Method in class org.brapi.v2.model.core.BrAPIStudyExperimentalDesign
-
MIAPPE V1.1 (DM-22) Description of the experimental design - Short description of the experimental design, possibly including statistical design.
- getDescription() - Method in class org.brapi.v2.model.core.BrAPIStudyGrowthFacility
-
MIAPPE V1.1 (DM-26) Description of growth facility - Short description of the facility in which the study was carried out.
- getDescription() - Method in class org.brapi.v2.model.geno.BrAPIAnalysis
-
A human readable description of the analysis
- getDescription() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSet
-
Optional free text description of this reference set.
- getDescription() - Method in class org.brapi.v2.model.geno.BrAPIVendorSpecificationServiceSpecificRequirements
-
Get description
- getDescription() - Method in enum org.brapi.v2.model.germ.BrAPIBiologicalStatusOfAccessionCode
-
- getDescription() - Method in class org.brapi.v2.model.germ.BrAPIBreedingMethod
-
human readable description of the breeding method
- getDescription() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmStorageTypes
-
- getDescription() - Method in enum org.brapi.v2.model.germ.BrAPIGermplasmStorageTypesEnum
-
- getDescription() - Method in class org.brapi.v2.model.pheno.BrAPIEventParameters
-
A human readable description of this event parameter.
- getDescription() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
The human readable description of an image.
- getDescription() - Method in class org.brapi.v2.model.pheno.BrAPIMethod
-
Method description MIAPPE V1.1 (DM-90) Method description - Textual
description of the method, which may extend a method defined in an external
reference with specific parameters, e.g.
- getDescription() - Method in class org.brapi.v2.model.pheno.BrAPIOntology
-
Human readable description of Ontology
- getDescriptiveOntologyTerms() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
A list of terms to formally describe the image.
- getDescriptiveOntologyTerms() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
A list of terms to formally describe the image to search for.
- getDeterminedDate() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttributeValue
-
The date the value of this attribute was determined for a given germplasm
- getDimension() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrixPagination
-
The dimension of the matrix being paginated
- getDimension() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequestPagination
-
the dimension of the matrix being paginated
- getDiscreteDates() - Method in class org.brapi.v2.model.pheno.BrAPIEventDateRange
-
A list of dates when the event occurred <br/>MIAPPE V1.1 (DM-68) Event
date - Date and time of the event.
- getDocumentationLinks() - Method in class org.brapi.v2.model.BrAPIOntologyReference
-
links to various ontology documentation
- getDocumentationURL() - Method in class org.brapi.v2.model.core.BrAPILocation
-
A URL to the human readable documentation of this object
- getDocumentationURL() - Method in class org.brapi.v2.model.core.BrAPIProgram
-
A URL to the human readable documentation of this object
- getDocumentationURL() - Method in class org.brapi.v2.model.core.BrAPIServerInfo
-
A URL to the human readable documentation of this object
- getDocumentationURL() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
A URL to the human readable documentation of this object
- getDocumentationURL() - Method in class org.brapi.v2.model.core.BrAPITrial
-
A URL to the human readable documentation of this object
- getDocumentationURL() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
A URL to the human readable documentation of this object
- getDocumentationURL() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
A URL to the human readable documentation of this object
- getDocumentationURL() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
A URL to the human readable documentation of an object
- getDocumentationURL() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
A URL to the human readable documentation of this object
- getDocumentationURL() - Method in class org.brapi.v2.model.pheno.BrAPIOntology
-
A URL to the human readable documentation of this object
- getDonorAccessionNumber() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmDonors
-
The accession number assigned by the donor MCPD (v2.1) (DONORNUMB) 23.
- getDonorAccessionNumber() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDDonorInfo
-
MCPD (v2.1) (DONORNUMB) 23.
- getDonorAccessionPui() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDDonorInfo
-
PUI (DOI mostly) of the accession in the donor system.
- getDonorInfo() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
Get donorInfo
- getDonorInstitute() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDDonorInfo
-
Get donorInstitute
- getDonorInstituteCode() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmDonors
-
The institute code for the donor institute MCPD (v2.1) (DONORCODE) 22.
- getDonors() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
List of donor institutes
- getElevation() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingSite
-
MCPD (v2.1) (ELEVATION) 16.
- getEmail() - Method in class org.brapi.v2.model.core.BrAPIContact
-
The contacts email address MIAPPE V1.1 (DM-32) Person email - The electronic mail address of the person.
- getEmailAddress() - Method in class org.brapi.v2.model.core.BrAPIPerson
-
email address for this person
- getEmailAddresses() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
email address for this person
- getEnd() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
This field is optional and may be ignored if there is no relevant map or
reference to be associated with.
- getEnd() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
The end of the window (0-based, exclusive) for which overlapping variants should be returned.
- getEndDate() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
The date the study ends MIAPPE V1.1 (DM-15) End date of study - Date and, if
relevant, time when the experiment ended
- getEndDate() - Method in class org.brapi.v2.model.core.BrAPITrial
-
The date this trial ends
- getEndDate() - Method in class org.brapi.v2.model.pheno.BrAPIEventDateRange
-
The end of a continous or regularly repetitive event <br/>MIAPPE V1.1
(DM-68) Event date - Date and time of the event.
- getEntity() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
A trait can be decomposed as \"Trait\" = \"Entity\" + \"Attribute\", the
entity is the part of the plant that the trait refers to e.g., for \"grain
colour\", entity = \"grain\"
- getEntityPUI() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
The Permanent Unique Identifier of a Trait Entity, usually in the form of a
URI <br/>A Trait can be decomposed as \"Trait\" =
\"Entity\" + \"Attribute\", the Entity is the part of the
plant that the trait refers to e.g., for \"grain colour\", entity
= \"grain\"
- getEntryType() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitPosition
-
The type of entry for this observation unit.
- getEnvironmentParameters() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
Environmental parameters that were kept constant throughout the study and did
not change between observation units.
- getEnvironmentType() - Method in class org.brapi.v2.model.core.BrAPILocation
-
Describes the general type of environment of the location.
- getEventDateRange() - Method in class org.brapi.v2.model.pheno.BrAPIEvent
-
Get eventDateRange
- getEventDbId() - Method in class org.brapi.v2.model.pheno.BrAPIEvent
-
Internal database identifier
- getEventDescription() - Method in class org.brapi.v2.model.pheno.BrAPIEvent
-
A detailed, human-readable description of this event MIAPPE V1.1 (DM-67)
Event description - Description of the event, including details such as
amount applied and possibly duration of the event.
- getEventParameters() - Method in class org.brapi.v2.model.pheno.BrAPIEvent
-
A list of objects describing additional event parameters.
- getEventType() - Method in class org.brapi.v2.model.pheno.BrAPIEvent
-
General category for this event (e.g.
- getEventTypeDbId() - Method in class org.brapi.v2.model.pheno.BrAPIEvent
-
An identifier for this event type, in the form of an ontology class reference
MIAPPE V1.1 (DM-66) Event accession number - Accession number of the event
type in a suitable controlled vocabulary (Crop Ontology).
- getExperimentalDesign() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
Get experimentalDesign
- getExposure() - Method in class org.brapi.v2.model.core.BrAPILocation
-
Describes the level of protection/exposure for things like sun light and
wind.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
List of external references for the trait to search for
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
Deprecated.
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
Deprecated.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
List of external reference IDs.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
List of external reference IDs.
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
Deprecated.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.core.request.BrAPIProgramSearchRequest
-
List of external references for the trait to search for
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.core.request.BrAPIProgramSearchRequest
-
Deprecated.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
List of external references for the trait to search for
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
Deprecated.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
List of external references for the trait to search for
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
Deprecated.
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
List of external references for the trait to search for
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
**Deprecated in v2.1** Please use `externalReferenceIds`.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
List of external reference IDs.
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
List of external references for the trait to search for
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
List of external references for the trait to search for
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
List of external references for the trait to search for
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
**Deprecated in v2.1** Please use `externalReferenceIds`.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
List of external reference IDs.
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
**Deprecated in v2.1** Please use `externalReferenceIds`.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
List of external reference IDs.
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
Deprecated.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
List of external reference IDs.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of external references for the trait to search for
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
Deprecated.
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
Deprecated.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
List of external reference IDs.
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
**Deprecated in v2.1** Please use `externalReferenceIds`.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
List of external reference IDs.
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
Deprecated.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
List of external references for the trait to search for
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
Deprecated.
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
Deprecated.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
List of external reference IDs.
- getExternalReferenceIDs() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
Deprecated.
- getExternalReferenceIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
List of external reference IDs.
- getExternalReferences() - Method in class org.brapi.v2.model.core.BrAPIListBaseFields
-
Get externalReferences
- getExternalReferences() - Method in interface org.brapi.v2.model.core.BrAPIListBaseFieldsInterface
-
- getExternalReferences() - Method in class org.brapi.v2.model.core.BrAPILocation
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.core.BrAPIPerson
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.core.BrAPIProgram
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.core.BrAPITrial
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.geno.BrAPICallSet
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.geno.BrAPIPlate
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSet
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.geno.BrAPISample
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.geno.BrAPIVariantSet
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateNewRequest
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.germ.BrAPICross
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.germ.BrAPICrossingProject
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
An array of external reference ids.
- getExternalReferences() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttributeValue
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.germ.BrAPIPlannedCross
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
An array of external reference ids.
- getExternalReferences() - Method in class org.brapi.v2.model.germ.BrAPISeedLotTransaction
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.pheno.BrAPIMethod
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.pheno.BrAPIScale
-
Get externalReferences
- getExternalReferences() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
Get externalReferences
- getExternalReferenceSources() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
List of external references sources for the trait to search for
- getExternalReferenceSources() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
List of identifiers for the source system or database of an external
reference (use with `externalReferenceIDs` parameter)
- getExternalReferenceSources() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
List of external references sources for the trait to search for
- getExternalReferenceSources() - Method in class org.brapi.v2.model.core.request.BrAPIProgramSearchRequest
-
List of external references sources for the trait to search for
- getExternalReferenceSources() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
List of external references sources for the trait to search for
- getExternalReferenceSources() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
List of external references sources for the trait to search for
- getExternalReferenceSources() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
List of external references sources for the trait to search for
- getExternalReferenceSources() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
List of identifiers for the source system or database of an external reference (use with `externalReferenceIDs` parameter)
- getExternalReferenceSources() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
List of external references sources for the trait to search for
- getExternalReferenceSources() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
List of external references sources for the trait to search for
- getExternalReferenceSources() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
List of external references sources for the trait to search for
- getExternalReferenceSources() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
List of identifiers for the source system or database of an external reference (use with `externalReferenceIDs` parameter)
- getExternalReferenceSources() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
List of identifiers for the source system or database of an external reference (use with `externalReferenceIDs` parameter)
- getExternalReferenceSources() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
List of identifiers for the source system or database of an external
reference (use with `externalReferenceIDs` parameter)
- getExternalReferenceSources() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of external references sources for the trait to search for
- getExternalReferenceSources() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
List of identifiers for the source system or database of an external
reference (use with `externalReferenceIDs` parameter)
- getExternalReferenceSources() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
List of identifiers for the source system or database of an external reference (use with `externalReferenceIDs` parameter)
- getExternalReferenceSources() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
List of external references sources for the trait to search for
- getExternalReferenceSources() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
List of external references sources for the trait to search for
- getExternalReferenceSources() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
List of identifiers for the source system or database of an external
reference (use with `externalReferenceIDs` parameter)
- getExternalReferenceSources() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
List of identifiers for the source system or database of an external
reference (use with `externalReferenceIDs` parameter)
- getFactor() - Method in class org.brapi.v2.model.pheno.BrAPIObservationTreatment
-
The type of treatment/factor.
- getFamilyCode() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
The code representing the family of this germplasm
- getFamilyCodes() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
A familyCode representing the family this germplasm belongs to.
- getFamilyCodes() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
A familyCode representing the family this germplasm belongs to.
- getFieldAbbreviation() - Method in class org.brapi.v2.model.geno.BrAPICallGenotypeMetadata
-
The abbreviated code of the field represented in this Genotype Field.
- getFieldAbbreviation() - Method in class org.brapi.v2.model.geno.BrAPIVariantSetMetadataFields
-
The abbreviated code of the field represented in this Genotype Field.
- getFieldName() - Method in class org.brapi.v2.model.geno.BrAPICallGenotypeMetadata
-
The name of the field represented in this Genotype Field.
- getFieldName() - Method in class org.brapi.v2.model.geno.BrAPIVariantSetMetadataFields
-
The name of the field represented in this Genotype Field.
- getFieldValue() - Method in class org.brapi.v2.model.geno.BrAPICallGenotypeMetadata
-
The additional metadata value associated with this genotype call
- getFileDescription() - Method in class org.brapi.v2.model.BrAPIDataFile
-
A human readable description of the file contents
- getFileDescription() - Method in class org.brapi.v2.model.geno.BrAPIShipmentForm
-
The human readable long description for this form
- getFileFormat() - Method in class org.brapi.v2.model.BrAPIDataLink
-
The MIME type of the file (ie text/csv, application/excel, application/zip).
- getFileFormat() - Method in class org.brapi.v2.model.geno.BrAPIAvailableFormat
-
fileFormat defines the MIME type of the file (ie text/csv, application/excel, application/zip).
- getFileFormat() - Method in class org.brapi.v2.model.geno.BrAPIVariantSetAvailableFormats
-
fileFormat defines the MIME type of the file (ie text/csv, application/excel, application/zip).
- getFileMD5Hash() - Method in class org.brapi.v2.model.BrAPIDataFile
-
The MD5 Hash of the file contents to be used as a check sum
- getFileName() - Method in class org.brapi.v2.model.BrAPIDataFile
-
The name of the file
- getFileName() - Method in class org.brapi.v2.model.geno.BrAPIShipmentForm
-
The human readable name for this form
- getFileName() - Method in class org.brapi.v2.model.geno.BrAPIVendorResultFile
-
Name of the file
- getFileSize() - Method in class org.brapi.v2.model.BrAPIDataFile
-
The size of the file in bytes
- getFileType() - Method in class org.brapi.v2.model.BrAPIDataFile
-
The type or format of the file.
- getFileType() - Method in class org.brapi.v2.model.geno.BrAPIVendorResultFile
-
Format of the file
- getFileURL() - Method in class org.brapi.v2.model.BrAPIDataFile
-
The absolute URL where the file is located
- getFileURL() - Method in class org.brapi.v2.model.geno.BrAPIAvailableFormat
-
A URL which indicates the location of the file version of this VariantSet.
- getFileURL() - Method in class org.brapi.v2.model.geno.BrAPIShipmentForm
-
The URL to download this form
- getFileURL() - Method in class org.brapi.v2.model.geno.BrAPIVariantSetAvailableFormats
-
A URL which indicates the location of the file version of this VariantSet.
- getFileURL() - Method in class org.brapi.v2.model.geno.BrAPIVendorResultFile
-
The URL to a file with the results of a vendor analysis
- getFiltersFailed() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
Zero or more filters that failed for this variant.
- getFirstName() - Method in class org.brapi.v2.model.core.BrAPIPerson
-
Persons first name
- getFirstNames() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
Persons first name
- getFormula() - Method in class org.brapi.v2.model.pheno.BrAPIMethod
-
For computational methods i.e., when the method consists in assessing the
trait by computing measurements, write the generic formula used for the
calculation
- getFromSeedLotDbId() - Method in class org.brapi.v2.model.germ.BrAPISeedLotTransaction
-
The identifier for the Seed Lot being transfered out of
- getFundingInformation() - Method in class org.brapi.v2.model.core.BrAPIProgram
-
Human readable name of the program
- getGenotype() - Method in class org.brapi.v2.model.geno.BrAPICall
-
Get genotype
- getGenotypeLikelihood() - Method in class org.brapi.v2.model.geno.BrAPICall
-
The genotype likelihood for this variant call.
- getGenotypeMetadata() - Method in class org.brapi.v2.model.geno.BrAPICall
-
Genotype Metadata are additional layers of metadata associated with each genotype.
- getGenotypeValue() - Method in class org.brapi.v2.model.geno.BrAPICall
-
- getGenus() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
Genus name for taxon.
- getGenus() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (GENUS) 5.
- getGenus() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
List of Genus names to identify germplasm
- getGenus() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
List of Genus names to identify germplasm
- getGeoCoordinates() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitPosition
-
Get geoCoordinates
- getGeoreferencingMethod() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingSite
-
MCPD (v2.1) (GEOREFMETH) 15.7 The georeferencing method used (GPS, determined from map, gazetteer, or estimated using software).
- getGermplasmDbId() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSetSourceGermplasm
-
The ID which uniquely identifies a germplasm within the given database server
- getGermplasmDbId() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSourceGermplasm
-
The ID which uniquely identifies a `Germplasm` within the given database server
- getGermplasmDbId() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The ID which uniquely identifies a germplasm
- getGermplasmDbId() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The ID which uniquely identifies a `Germplasm`
- getGermplasmDbId() - Method in class org.brapi.v2.model.germ.BrAPICrossParent
-
the unique identifier for a germplasm
- getGermplasmDbId() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
The ID which uniquely identifies a germplasm within the given database server
MIAPPE V1.1 (DM-41) Biological material ID - Code used to identify the
biological material in the data file.
- getGermplasmDbId() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttributeValue
-
The ID which uniquely identifies a germplasm within the given database server
- getGermplasmDbId() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
A unique identifier which identifies a germplasm in this database
- getGermplasmDbId() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
The ID which uniquely identifies a germplasm
- getGermplasmDbId() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeParents
-
Deprecated.
- getGermplasmDbId() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeRelative
-
The germplasm DbId of the parent of this germplasm
- getGermplasmDbId() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeSibling
-
the germplasm DbId of the sibling
- getGermplasmDbId() - Method in class org.brapi.v2.model.germ.BrAPIProgenyNode
-
The ID which uniquely identifies a germplasm
- getGermplasmDbId() - Method in class org.brapi.v2.model.germ.BrAPIProgenyNodeProgeny
-
The unique identifier of a progeny germplasm
- getGermplasmDbId() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
Deprecated.
- getGermplasmDbId() - Method in class org.brapi.v2.model.germ.BrAPISeedLotContentMixture
-
The unique DbId of the Germplasm contained in this Seed Lot
- getGermplasmDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
The ID which uniquely identifies a germplasm
- getGermplasmDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The ID which uniquely identifies a germplasm
- getGermplasmDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
List of IDs which uniquely identify germplasm to search for
- getGermplasmDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
A list of IDs which uniquely identify `Germplasm` within the given database server
- getGermplasmDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
List of IDs which uniquely identify germplasm to search for
- getGermplasmDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
The ID which uniquely identifies a germplasm
- getGermplasmDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
List of IDs which uniquely identify germplasm to search for
- getGermplasmDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
List of IDs which uniquely identify germplasm to search for
- getGermplasmDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
List of IDs which uniquely identify germplasm to search for
- getGermplasmDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
List of IDs which uniquely identify germplasm to search for
- getGermplasmDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of IDs which uniquely identify germplasm to search for
- getGermplasmDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
List of IDs which uniquely identify germplasm to search for
- getGermplasmDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
List of IDs which uniquely identify germplasm to search for
- getGermplasmDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
List of IDs which uniquely identify germplasm to search for
- getGermplasmDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
List of IDs which uniquely identify germplasm to search for
- getGermplasmName() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSetSourceGermplasm
-
The human readable name of a germplasm
- getGermplasmName() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSourceGermplasm
-
The human readable name of a `Germplasm`
- getGermplasmName() - Method in class org.brapi.v2.model.germ.BrAPICrossParent
-
the human readable name for a germplasm
- getGermplasmName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
- getGermplasmName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttributeValue
-
Name of the germplasm.
- getGermplasmName() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
A human readable name for a germplasm
- getGermplasmName() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeParents
-
Deprecated.
- getGermplasmName() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeRelative
-
the human readable name of the parent of this germplasm
- getGermplasmName() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeSibling
-
the germplasm name of the sibling
- getGermplasmName() - Method in class org.brapi.v2.model.germ.BrAPIProgenyNode
-
A human readable name for a germplasm
- getGermplasmName() - Method in class org.brapi.v2.model.germ.BrAPIProgenyNodeProgeny
-
The human readable name of a progeny germplasm
- getGermplasmName() - Method in class org.brapi.v2.model.germ.BrAPISeedLotContentMixture
-
The human readable name of the Germplasm contained in this Seed Lot
- getGermplasmName() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
Name of the germplasm.
- getGermplasmName() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
Name of the germplasm.
- getGermplasmNames() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
List of human readable names to identify germplasm to search for
- getGermplasmNames() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
A list of human readable `Germplasm` names
- getGermplasmNames() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
List of human readable names to identify germplasm to search for
- getGermplasmNames() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
List of human readable names to identify germplasm to search for
- getGermplasmNames() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
List of human readable names to identify germplasm to search for
- getGermplasmNames() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
List of human readable names to identify germplasm to search for
- getGermplasmNames() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
List of human readable names to identify germplasm to search for
- getGermplasmNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
List of human readable names to identify germplasm to search for
- getGermplasmNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of human readable names to identify germplasm to search for
- getGermplasmNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
List of human readable names to identify germplasm to search for
- getGermplasmNames() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
List of human readable names to identify germplasm to search for
- getGermplasmNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
List of human readable names to identify germplasm to search for
- getGermplasmNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
List of human readable names to identify germplasm to search for
- getGermplasmOrigin() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
Information for material (orchard, natural sites, ...).
- getGermplasmPreprocessing() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
Description of any process or treatment applied uniformly to the germplasm,
prior to the study itself.
- getGermplasmPUI() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
- getGermplasmPUI() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmDonors
-
Deprecated.
- getGermplasmPUI() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (PUID) 0.
- getGermplasmPUI() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
The Permanent Unique Identifier which represents a germplasm MIAPPE V1.1 (DM-41) Biological material ID - Code used to identify the biological material in the data file.
- getGermplasmPUIs() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
A list of premenant unique identifiers associated with `Germplasm`
- getGermplasmPUIs() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
List of Permanent Unique Identifiers to identify germplasm
- getGermplasmPUIs() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
List of Permanent Unique Identifiers to identify germplasm
- getGrowthFacility() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
Get growthFacility
- getGrowthStage() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Growth stage at which measurement is made (examples: \"flowering\")
- getGrowthStage() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Growth stage at which measurement is made (examples: \"flowering\")
- getHeaderRow() - Method in class org.brapi.v2.model.pheno.BrAPIObservationTable
-
The table is REQUIRED to have the following columns
- getHeaderRow() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitTable
-
The table is REQUIRED to have the following columns
- getImageDbId() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
The unique identifier of an image
- getImageDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
- getImageDbIds() - Method in class org.brapi.v2.model.pheno.response.BrAPIImageDeleteResponseResult
-
The unique ids of the Image records which have been successfully deleted
- getImageFileName() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
The name of the image file.
- getImageFileNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
Image file names to search for.
- getImageFileSize() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
The size of the image in Bytes.
- getImageFileSizeMax() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
A maximum image file size to search for.
- getImageFileSizeMin() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
A minimum image file size to search for.
- getImageHeight() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
The height of the image in Pixels.
- getImageHeightMax() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
A maximum image height to search for.
- getImageHeightMin() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
A minimum image height to search for.
- getImageLocation() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
Get imageLocation
- getImageLocation() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
Get imageLocation
- getImageName() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
The human readable name of an image.
- getImageNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
Human readable names to search for.
- getImageTimeStamp() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
The date and time the image was taken
- getImageTimeStampRangeEnd() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
The latest timestamp to search for.
- getImageTimeStampRangeStart() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
The earliest timestamp to search for.
- getImageURL() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
The complete, absolute URI path to the image file.
- getImageWidth() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
The width of the image in Pixels.
- getImageWidthMax() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
A maximum image width to search for.
- getImageWidthMin() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
A minimum image width to search for.
- getInstituteAddress() - Method in class org.brapi.v2.model.core.BrAPILocation
-
The street address of the institute representing this location MIAPPE V1.1
(DM-16) Contact institution - Name and address of the institution responsible
for the study.
- getInstituteAddress() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingInstitutes
-
MCPD (v2.1) (COLLINSTADDRESS) 4.1.1 Address of the institute collecting the sample.
- getInstituteAddresses() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
The street address of the institute to search for
- getInstituteCode() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
The code for the Institute that has bred the material.
- getInstituteCode() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (INSTCODE) 1.
- getInstituteCode() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDBreedingInstitutes
-
MCPD (v2.1) (BREDCODE) 18.
- getInstituteCode() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingInstitutes
-
MCPD (v2.1) (COLLCODE) 4.
- getInstituteCode() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDDonorInfoDonorInstitute
-
MCPD (v2.1) (DONORCODE) 22.
- getInstituteCode() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDSafetyDuplicateInstitutes
-
MCPD (v2.1) (DUPLSITE) 25.
- getInstituteCodes() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
The code for the institute that maintains the material.
- getInstituteCodes() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
The code for the institute that maintains the material.
- getInstituteName() - Method in class org.brapi.v2.model.core.BrAPIContact
-
The name of the institution which this contact is part of MIAPPE V1.1 (DM-35) Person affiliation - The institution the person belongs to
- getInstituteName() - Method in class org.brapi.v2.model.core.BrAPILocation
-
Each institute/laboratory can have several experimental field MIAPPE V1.1
(DM-16) Contact institution - Name and address of the institution responsible
for the study.
- getInstituteName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
The name of the institution which bred the material
- getInstituteName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDBreedingInstitutes
-
MCPD (v2.1) (BREDNAME) 18.1 Name of the institute (or person) that bred the material.
- getInstituteName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingInstitutes
-
MCPD (v2.1) (COLLNAME) 4.1 Name of the institute collecting the sample.
- getInstituteName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDDonorInfoDonorInstitute
-
MCPD (v2.1) (DONORNAME) 22.1 Name of the donor institute (or person).
- getInstituteName() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDSafetyDuplicateInstitutes
-
MCPD (v2.1) (DUPLINSTNAME) 25.1 Name of the institute where a safety duplicate of the accession is maintained.
- getInstituteNames() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
The name of the institute to search for
- getInstitution() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Name of institution submitting the variable
- getInstitution() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Name of institution submitting the variable
- getKey() - Method in class org.brapi.v2.model.geno.BrAPIVendorSpecificationServiceSpecificRequirements
-
Get key
- getKey() - Method in class org.brapi.v2.model.pheno.BrAPIEventParameters
-
Deprecated.
- getLabel() - Method in class org.brapi.v2.model.pheno.BrAPIScaleValidValuesCategories
-
A text label for a category
- getLanguage() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
2 letter ISO 639-1 code for the language of submission of the variable.
- getLanguage() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
2 letter ISO 639-1 code for the language of submission of the variable.
- getLastName() - Method in class org.brapi.v2.model.core.BrAPIPerson
-
Persons last name
- getLastNames() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
Persons last name
- getLastUpdate() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
Get lastUpdate
- getLastUpdated() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
The timestamp for the last update to this Seed Lot (including transactions)
- getLatitudeDecimal() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingSite
-
MCPD (v2.1) (DECLATITUDE) 15.1 Latitude expressed in decimal degrees.
- getLatitudeDegrees() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingSite
-
MCPD (v2.1) (LATITUDE) 15.2 Degrees (2 digits) minutes (2 digits), and seconds (2 digits) followed by N (North) or S (South) (e.g.
- getLeadPersonDbId() - Method in class org.brapi.v2.model.core.BrAPIProgram
-
The unique identifier of the program leader
- getLeadPersonDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIProgramSearchRequest
-
The person DbIds of the program leader to search for
- getLeadPersonName() - Method in class org.brapi.v2.model.core.BrAPIProgram
-
The name of the program leader
- getLeadPersonNames() - Method in class org.brapi.v2.model.core.request.BrAPIProgramSearchRequest
-
The names of the program leader to search for
- getLength() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
The length of this reference's sequence.
- getLevelCode() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitLevelRelationship
-
An ID code for this level tag.
- getLevelName() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitHierarchyLevel
-
A name for this level
- getLevelOrder() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitHierarchyLevel
-
`levelOrder` defines where that level exists in the hierarchy of levels.
- getLicence() - Method in class org.brapi.v2.model.pheno.BrAPIOntology
-
Ontology licence
- getLicense() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
The usage license associated with the study data
- getLicense() - Method in class org.brapi.v2.model.core.BrAPITrialDatasetAuthorships
-
MIAPPE V1.1 (DM-7) License - License for the reuse of the data associated with this investigation.
- getLinkageGroupCount() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
The number of linkage groups present in this genomic map
- getLinkageGroupName() - Method in class org.brapi.v2.model.geno.BrAPILinkageGroup
-
The Uniquely Identifiable name of this linkage group
- getLinkageGroupName() - Method in class org.brapi.v2.model.geno.BrAPIMarkerPosition
-
The Uniquely Identifiable name of this linkage group
- getLinkageGroupNames() - Method in class org.brapi.v2.model.geno.request.BrAPIMarkerPositionSearchRequest
-
The Uniquely Identifiable name of this linkage group
- getListDbId() - Method in class org.brapi.v2.model.core.BrAPIListSummary
-
The unique identifier for a List
- getListDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
Get listDbIds
- getListDescription() - Method in class org.brapi.v2.model.core.BrAPIListBaseFields
-
Description of a List
- getListDescription() - Method in interface org.brapi.v2.model.core.BrAPIListBaseFieldsInterface
-
- getListName() - Method in class org.brapi.v2.model.core.BrAPIListBaseFields
-
Human readable name of a List
- getListName() - Method in interface org.brapi.v2.model.core.BrAPIListBaseFieldsInterface
-
- getListNames() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
Get listNames
- getListOwnerName() - Method in class org.brapi.v2.model.core.BrAPIListBaseFields
-
Human readable name of a List Owner.
- getListOwnerName() - Method in interface org.brapi.v2.model.core.BrAPIListBaseFieldsInterface
-
- getListOwnerNames() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
Get listOwnerNames
- getListOwnerPersonDbId() - Method in class org.brapi.v2.model.core.BrAPIListBaseFields
-
The unique identifier for a List Owner.
- getListOwnerPersonDbId() - Method in interface org.brapi.v2.model.core.BrAPIListBaseFieldsInterface
-
- getListOwnerPersonDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
Get listOwnerPersonDbIds
- getListSize() - Method in class org.brapi.v2.model.core.BrAPIListBaseFields
-
The number of elements in a List
- getListSize() - Method in interface org.brapi.v2.model.core.BrAPIListBaseFieldsInterface
-
- getListSource() - Method in class org.brapi.v2.model.core.BrAPIListBaseFields
-
The description of where a List originated from
- getListSource() - Method in interface org.brapi.v2.model.core.BrAPIListBaseFieldsInterface
-
- getListSources() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
Get listSources
- getListType() - Method in class org.brapi.v2.model.core.BrAPIListBaseFields
-
Get listType
- getListType() - Method in interface org.brapi.v2.model.core.BrAPIListBaseFieldsInterface
-
- getListType() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
Get listType
- getLocation() - Method in class org.brapi.v2.model.core.BrAPIServerInfo
-
Physical location of this server (ie.
- getLocationDbId() - Method in class org.brapi.v2.model.core.BrAPILocation
-
The unique identifier for a Location
- getLocationDbId() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
The unique identifier for a Location
- getLocationDbId() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
The unique identifier for a Location
- getLocationDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The ID which uniquely identifies a location, associated with this study
- getLocationDbIds() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
The location ids to search for
- getLocationDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
The location ids to search for
- getLocationDbIds() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
The location ids to search for
- getLocationDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
The location ids to search for
- getLocationDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
The location ids to search for
- getLocationDescription() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingSite
-
MCPD (v2.1) (COLLSITE) 14.
- getLocationName() - Method in class org.brapi.v2.model.core.BrAPILocation
-
A human readable name for this location MIAPPE V1.1 (DM-18) Experimental site
name - The name of the natural site, experimental field, greenhouse,
phenotyping facility, etc.
- getLocationName() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
A human readable name for this location MIAPPE V1.1 (DM-18) Experimental site
name - The name of the natural site, experimental field, greenhouse,
phenotyping facility, etc.
- getLocationName() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
A human readable name for a location
- getLocationName() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The human readable name of a location associated with this study
- getLocationNames() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
A human readable names to search for
- getLocationNames() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
A human readable names to search for
- getLocationNames() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
A human readable names to search for
- getLocationNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
A human readable names to search for
- getLocationNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
A human readable names to search for
- getLocationType() - Method in class org.brapi.v2.model.core.BrAPILocation
-
The type of location this represents (ex.
- getLocationTypes() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
The type of location this represents (ex.
- getLongitudeDecimal() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingSite
-
MCPD (v2.1) (DECLONGITUDE) 15.3 Longitude expressed in decimal degrees.
- getLongitudeDegrees() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingSite
-
MCPD (v2.1) (LONGITUDE) 15.4 Degrees (3 digits), minutes (2 digits), and seconds (2 digits) followed by E (East) or W (West) (e.g.
- getMailingAddress() - Method in class org.brapi.v2.model.core.BrAPIPerson
-
physical address of this person
- getMailingAddresses() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
physical address of this person
- getMainAbbreviation() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
Main abbreviation for trait name.
- getMapDbId() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
The ID which uniquely identifies this genomic map
- getMapDbId() - Method in class org.brapi.v2.model.geno.BrAPIMarkerPosition
-
The unique ID of the map
- getMapDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIMarkerPositionSearchRequest
-
The unique ID of the map
- getMapName() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
A human readable name for this genomic map
- getMapName() - Method in class org.brapi.v2.model.geno.BrAPIMarkerPosition
-
The human readable name of the map
- getMapPUI() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
The DOI or other permanent identifier for this genomic map
- getMarkerCount() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
The number of markers present in this genomic map
- getMarkerCount() - Method in class org.brapi.v2.model.geno.BrAPILinkageGroup
-
The number of markers associated with this linkage group
- getMax() - Method in class org.brapi.v2.model.pheno.BrAPIScaleValidValues
-
Deprecated.
- getMaximumValue() - Method in class org.brapi.v2.model.pheno.BrAPIScaleValidValues
-
Maximum value for numerical, date, and time scales.
- getMaxLength() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
The minimum length of this reference's sequence.
- getMaxPosition() - Method in class org.brapi.v2.model.geno.BrAPILinkageGroup
-
The maximum position of a marker within this linkage group
- getMaxPosition() - Method in class org.brapi.v2.model.geno.request.BrAPIMarkerPositionSearchRequest
-
The maximum position
- getMd5checksum() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
The MD5 checksum uniquely representing this `Reference` as a lower-case
hexadecimal string, calculated as the MD5 of the upper-case sequence
excluding all whitespace characters (this is equivalent to SQ:M5 in SAM).
- getMd5checksum() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSet
-
Order-independent MD5 checksum which identifies this `ReferenceSet`.
- getMd5checksum() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
If set, return the reference sets for which the `md5checksum` matches this string (case-sensitive, exact match).
- getMd5checksums() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
If specified, return the references for which the `md5checksum` matches this string (case-sensitive, exact match).
- getMd5sum() - Method in class org.brapi.v2.model.geno.BrAPIVendorResultFile
-
MD5 Hash Check Sum for the file to confirm download without error
- getMessage() - Method in class org.brapi.v2.model.BrAPIStatus
-
A short message concerning the status of this request/response
- getMessageType() - Method in class org.brapi.v2.model.BrAPIStatus
-
The logging level for the attached message
- getMetadata() - Method in class org.brapi.v2.model.BrAPIAcceptedSearchResponse
-
Get metadata
- getMetadata() - Method in interface org.brapi.v2.model.BrAPIResponse
-
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPICommonCropNamesResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPIListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPIListsListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPIListsSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPILocationListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPILocationSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPIPersonListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPIPersonSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPIProgramListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPIProgramSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPISeasonListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPISeasonSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPIServerInfoResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPIStudyListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPIStudySingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPIStudyTypesResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPITrialListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.core.response.BrAPITrialSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIAlleleMatrixResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPICallSetResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPICallSetsListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPICallsListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIGenomeMapListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIGenomeMapSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPILinkageGroupListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIMarkerPositionListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIPlateListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIPlateSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIReferenceBasesResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIReferenceSetsListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIReferenceSetsSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIReferenceSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIReferencesListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPISampleListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPISampleSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIVariantSetResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIVariantSetsListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIVariantSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIVariantsListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorOrderListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorOrderStatusResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorOrderSubmissionSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorPlateListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorPlateSubmissionIdSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorPlateSubmissionSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorResultFileListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorSpecificationSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIBreedingMethodListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIBreedingMethodSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPICrossesListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPICrossingProjectsListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPICrossingProjectsSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeCategoryListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeValueListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeValueSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmMCPDResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmPedigreeResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmProgenyResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIPedigreeListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPIPlannedCrossesListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPISeedLotListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPISeedLotSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.germ.response.BrAPISeedLotTransactionListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIEventsResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIImageDeleteResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIImageListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIImageSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIMethodListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIMethodSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationDeleteResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationLevelListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationTableResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationUnitListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationUnitSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationUnitTableResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationVariableListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationVariableSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIOntologyListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIOntologySingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIScaleListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPIScaleSingleResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPITraitListResponse
-
Get metadata
- getMetadata() - Method in class org.brapi.v2.model.pheno.response.BrAPITraitSingleResponse
-
Get metadata
- getMetadataFields() - Method in class org.brapi.v2.model.geno.BrAPIVariantSet
-
The 'metadataFields' array indicates which types of genotyping data and metadata are available in the VariantSet.
- getMethod() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Get method
- getMethod() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Get method
- getMethodClass() - Method in class org.brapi.v2.model.pheno.BrAPIMethod
-
Method class (examples: \"Measurement\", \"Counting\", \"Estimation\",
\"Computation\", etc.)
- getMethodDbId() - Method in class org.brapi.v2.model.pheno.BrAPIMethod
-
Method unique identifier
- getMethodDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
List of methods to filter search results
- getMethodDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of methods to filter search results
- getMethodDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
List of methods to filter search results
- getMethodName() - Method in class org.brapi.v2.model.pheno.BrAPIMethod
-
Human readable name for the method MIAPPE V1.1 (DM-88) Method Name of the
method of observation
- getMethodNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
Human readable name for the method <br/>MIAPPE V1.1 (DM-88) Method Name
of the method of observation
- getMethodNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
Human readable name for the method <br/>MIAPPE V1.1 (DM-88) Method Name
of the method of observation
- getMethodPUI() - Method in class org.brapi.v2.model.pheno.BrAPIMethod
-
The Permanent Unique Identifier of a Method, usually in the form of a URI
- getMethodPUIs() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
The Permanent Unique Identifier of a Method, usually in the form of a URI
- getMethodPUIs() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The Permanent Unique Identifier of a Method, usually in the form of a URI
- getMethods() - Method in class org.brapi.v2.model.core.BrAPIService
-
- getMiddleName() - Method in class org.brapi.v2.model.core.BrAPIPerson
-
Persons middle name
- getMiddleNames() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
Persons middle name
- getMimeType() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
The file type of the image.
- getMimeTypes() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
A set of image file types to search for.
- getMin() - Method in class org.brapi.v2.model.pheno.BrAPIScaleValidValues
-
Deprecated.
- getMinimumValue() - Method in class org.brapi.v2.model.pheno.BrAPIScaleValidValues
-
Minimum value for numerical, date, and time scales.
- getMinLength() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
The minimum length of this reference's sequence.
- getMinPosition() - Method in class org.brapi.v2.model.geno.request.BrAPIMarkerPositionSearchRequest
-
The minimum position
- getMixturePercentage() - Method in class org.brapi.v2.model.germ.BrAPISeedLotContentMixture
-
The percentage of the given germplasm in the seed lot mixture.
- getMlsStatus() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (MLSSTAT) 27.
- getModality() - Method in class org.brapi.v2.model.pheno.BrAPIObservationTreatment
-
The treatment/factor description.
- getName() - Method in class org.brapi.v2.model.BrAPIDataLink
-
The name of the external data link MIAPPE V1.1 (DM-38) Data file description - Description of the format of the data file.
- getName() - Method in class org.brapi.v2.model.core.BrAPIContact
-
The full name of this contact person MIAPPE V1.1 (DM-31) Person name - The name of the person (either full name or as used in scientific publications)
- getName() - Method in class org.brapi.v2.model.pheno.BrAPIEventParameters
-
The full name of an event parameter <br>ICASA
\"Variable_Name\"
- getNextPageToken() - Method in class org.brapi.v2.model.BrAPITokenPagination
-
The string token used to query the next page of data.
- getNextPageToken() - Method in class org.brapi.v2.model.geno.BrAPIReferenceBases
-
The continuation token, which is used to page through large result sets.
- getNumberOfSamples() - Method in class org.brapi.v2.model.geno.BrAPIVendorOrder
-
The total number of samples contained in this request.
- getNumberOfSamples() - Method in class org.brapi.v2.model.geno.BrAPIVendorPlateSubmission
-
The total number of samples contained in this request.
- getNumberOfSamples() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorPlateSubmissionRequest
-
The total number of samples contained in this request.
- getObjective() - Method in class org.brapi.v2.model.core.BrAPIProgram
-
The primary objective of the program
- getObjectives() - Method in class org.brapi.v2.model.core.request.BrAPIProgramSearchRequest
-
A program objective to search for
- getObservationDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
The ID which uniquely identifies an observation
- getObservationDbIds() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
A list of observation Ids this image is associated with, if applicable.
- getObservationDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
A list of observation Ids this image is associated with to search for
- getObservationDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
The unique id of an Observation
- getObservationDbIds() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationDeleteResponseResult
-
The unique ids of the Observation records which have been successfully deleted
- getObservationLevel() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitPosition
-
Get observationLevel
- getObservationLevelRelationships() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitPosition
-
Observation levels indicate the granularity level at which the measurements are taken.
- getObservationLevelRelationships() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
Searches for values in
ObservationUnit->observationUnitPosition->observationLevelRelationships
- getObservationLevelRelationships() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
Searches for values in
ObservationUnit->observationUnitPosition->observationLevelRelationships
- getObservationLevels() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
Observation levels indicate the granularity level at which the measurements
are taken.
- getObservationLevels() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
Searches for values in
ObservationUnit->observationUnitPosition->observationLevel
- getObservationLevels() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
Searches for values in
ObservationUnit->observationUnitPosition->observationLevel
- getObservations() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
All observations attached to this observation unit.
- getObservationTimeStamp() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
The date and time when this observation was made
- getObservationTimeStampRangeEnd() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
Timestamp range end
- getObservationTimeStampRangeStart() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
Timestamp range start
- getObservationUnitDbId() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The ID which uniquely identifies an observation unit
- getObservationUnitDbId() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The ID which uniquely identifies an `ObservationUnit`
- getObservationUnitDbId() - Method in class org.brapi.v2.model.germ.BrAPICrossParent
-
the unique identifier for an observation unit
- getObservationUnitDbId() - Method in class org.brapi.v2.model.pheno.BrAPIImage
-
The related observation unit identifier, if relevant.
- getObservationUnitDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
The ID which uniquely identifies an observation unit
- getObservationUnitDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The ID which uniquely identifies an observation unit MIAPPE V1.1 (DM-70)
Observation unit ID - Identifier used to identify the observation unit in
data files containing the values observed or measured on that unit.
- getObservationUnitDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitLevelRelationship
-
An ID code for this level tag.
- getObservationUnitDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
The ID which uniquely identifies an observation unit
- getObservationUnitDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
The ID which uniquely identifies an observation unit
- getObservationUnitDbIds() - Method in class org.brapi.v2.model.pheno.BrAPIEvent
-
A list of the affected observation units.
- getObservationUnitDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
A set of observation unit identifiers to search for.
- getObservationUnitDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
The unique id of an Observation Unit
- getObservationUnitDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
The unique id of an observation unit
- getObservationUnitName() - Method in class org.brapi.v2.model.germ.BrAPICrossParent
-
the human readable name for an observation unit
- getObservationUnitName() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
A human readable name for an observation unit
- getObservationUnitName() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
A human readable name for an observation unit
- getObservationUnitNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
The human readable identifier for an Observation Unit
- getObservationUnitPosition() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
Get observationUnitPosition
- getObservationUnitPUI() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
A Permanent Unique Identifier for an observation unit MIAPPE V1.1 (DM-72)
External ID - Identifier for the observation unit in a persistent repository,
comprises the name of the repository and the identifier of the observation
unit therein.
- getObservationUnitsDescription() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
MIAPPE V1.1 (DM-25) Observation unit description - General description of the
observation units in the study.
- getObservationVariableDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
The ID which uniquely identifies an observation variable
- getObservationVariableDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservationTableObservationVariables
-
Variable unique identifier
- getObservationVariableDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Variable unique identifier MIAPPE V1.1 (DM-83) Variable ID - Code used to identify the variable in the data file.
- getObservationVariableDbIds() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
List of observationVariableDbIds over which this study was performed.
- getObservationVariableDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
List of observation variable IDs to search for
- getObservationVariableDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
The DbIds of Variables to search for
- getObservationVariableDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
The DbIds of Variables to search for
- getObservationVariableDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The DbIds of Variables to search for
- getObservationVariableName() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
A human readable name for an observation variable
- getObservationVariableName() - Method in class org.brapi.v2.model.pheno.BrAPIObservationTableObservationVariables
-
Variable name (usually a short name)
- getObservationVariableName() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
- getObservationVariableNames() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
The names of Variables to search for
- getObservationVariableNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
The names of Variables to search for
- getObservationVariableNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
The names of Variables to search for
- getObservationVariableNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The names of Variables to search for
- getObservationVariablePUI() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Variable unique identifier MIAPPE V1.1 (DM-83) Variable ID - Code used to identify the variable in the data file.
- getObservationVariablePUIs() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
The names of Variables to search for
- getObservationVariablePUIs() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
The names of Variables to search for
- getObservationVariablePUIs() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
The Permanent Unique Identifier of an Observation Variable, usually in the
form of a URI
- getObservationVariablePUIs() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The Permanent Unique Identifier of an Observation Variable, usually in the
form of a URI
- getObservationVariables() - Method in class org.brapi.v2.model.pheno.BrAPIObservationTable
-
The list of observation variables which have values recorded for them in the data matrix.
- getObservationVariables() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitTable
-
The list of observation variables which have values recorded for them in the data matrix.
- getOffset() - Method in class org.brapi.v2.model.geno.BrAPIReferenceBases
-
The offset position (0-based) of the given sequence from the start of this `Reference`.
- getOntologyDbId() - Method in class org.brapi.v2.model.BrAPIOntologyReference
-
Ontology database unique identifier
- getOntologyDbId() - Method in class org.brapi.v2.model.pheno.BrAPIOntology
-
Ontology database unique identifier
- getOntologyDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
List of ontology IDs to search for
- getOntologyDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of ontology IDs to search for
- getOntologyDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
List of ontology IDs to search for
- getOntologyName() - Method in class org.brapi.v2.model.BrAPIOntologyReference
-
Ontology name
- getOntologyName() - Method in class org.brapi.v2.model.pheno.BrAPIOntology
-
Ontology name
- getOntologyReference() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Get ontologyReference
- getOntologyReference() - Method in class org.brapi.v2.model.pheno.BrAPIMethod
-
Get ontologyReference
- getOntologyReference() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Get ontologyReference
- getOntologyReference() - Method in class org.brapi.v2.model.pheno.BrAPIScale
-
Get ontologyReference
- getOntologyReference() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
Get ontologyReference
- getOrcid() - Method in class org.brapi.v2.model.core.BrAPIContact
-
The Open Researcher and Contributor ID for this contact person (orcid.org) MIAPPE V1.1 (DM-33) Person ID - An identifier for the data submitter.
- getOrderId() - Method in class org.brapi.v2.model.geno.BrAPIVendorOrder
-
The order id returned by the vendor when the order was successfully submitted.
- getOrderId() - Method in class org.brapi.v2.model.geno.BrAPIVendorOrderSubmission
-
A unique, alpha-numeric ID which identifies the order
- getOrganismName() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
Scientific organism name
- getOrganismName() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
Scientific organism name
- getOrganizationName() - Method in class org.brapi.v2.model.core.BrAPIServerInfo
-
The name of the organization that manages this server and data
- getOrganizationURL() - Method in class org.brapi.v2.model.core.BrAPIServerInfo
-
The URL of the organization that manages this server and data
- getPage() - Method in class org.brapi.v2.model.BrAPISearchRequestParametersPaging
-
Which result page is requested.
- getPage() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrixPagination
-
the requested page number (zero indexed)
- getPage() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
Which result page is requested.
- getPageSize() - Method in class org.brapi.v2.model.BrAPIPagination
-
The number of data elements returned, aka the size of the current page.
- getPageSize() - Method in class org.brapi.v2.model.BrAPISearchRequestParametersPaging
-
The size of the pages to be returned.
- getPageSize() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrixPagination
-
the maximum number of elements per page in this dimension of the matrix
- getPageSize() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
The size of the pages to be returned.
- getPageToken() - Method in class org.brapi.v2.model.BrAPISearchRequestParametersTokenPaging
-
Used to request a specific page of data to be returned.
- getPagination() - Method in class org.brapi.v2.model.BrAPIMetadata
-
Get pagination
- getPagination() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrix
-
Pagination for the matrix
- getPagination() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
Pagination for the matrix
- getParameterName() - Method in class org.brapi.v2.model.core.BrAPIEnvironmentParameter
-
Name of the environment parameter constant within the experiment
- getParameterPUI() - Method in class org.brapi.v2.model.core.BrAPIEnvironmentParameter
-
URI pointing to an ontology class for the parameter
- getParent1() - Method in class org.brapi.v2.model.germ.BrAPICross
-
Get parent1
- getParent1() - Method in class org.brapi.v2.model.germ.BrAPIPlannedCross
-
Get parent1
- getParent2() - Method in class org.brapi.v2.model.germ.BrAPICross
-
Get parent2
- getParent2() - Method in class org.brapi.v2.model.germ.BrAPIPlannedCross
-
Get parent2
- getParentDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
Search for Germplasm with these parents
- getParentLocationDbId() - Method in class org.brapi.v2.model.core.BrAPILocation
-
The type of location this represents (ex.
- getParentLocationDbIds() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
The unique identifier for a Location <br/> The Parent Location defines
the encompassing location that this location belongs to.
- getParentLocationName() - Method in class org.brapi.v2.model.core.BrAPILocation
-
The type of location this represents (ex.
- getParentLocationNames() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
A human readable name for a location <br/> The Parent Location defines
the encompassing location that this location belongs to.
- getParents() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
A list of parent germplasm references in the pedigree tree for this germplasm.
- getParentType() - Method in class org.brapi.v2.model.germ.BrAPICrossParent
-
The type of parent ex.
- getParentType() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeParents
-
Deprecated.
- getParentType() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNodeRelative
-
The type of parent the parent is.
- getParentType() - Method in class org.brapi.v2.model.germ.BrAPIProgenyNodeProgeny
-
Given a germplasm A having a progeny B and C, 'parentType' for progeny B item refers to the 'parentType' of A toward B.
- getPedigree() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
The cross name and optional selection history.
- getPedigree() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
Deprecated.
- getPedigreeDepth() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
Recursively include this number of levels up the tree in the response (parents, grand-parents, great-grand-parents, etc)
- getPedigreeString() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
The string representation of the pedigree for this germplasm in PURDY notation
- getPersonDbId() - Method in class org.brapi.v2.model.core.BrAPIPerson
-
Unique ID for a person
- getPersonDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
Unique ID for this person
- getPhaseSet() - Method in class org.brapi.v2.model.geno.BrAPICall
-
If this field is populated, this variant call's genotype ordering implies the phase of the bases and is consistent with any other variant calls on the same contig which have the same phase set string.
- getPhoneNumber() - Method in class org.brapi.v2.model.core.BrAPIPerson
-
phone number of this person
- getPhoneNumbers() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
phone number of this person
- getPlannedCrossDbId() - Method in class org.brapi.v2.model.germ.BrAPICross
-
the unique identifier for a planned cross
- getPlannedCrossDbId() - Method in class org.brapi.v2.model.germ.BrAPIPlannedCross
-
the unique identifier for a cross
- getPlannedCrossName() - Method in class org.brapi.v2.model.germ.BrAPICross
-
the human readable name for a planned cross
- getPlannedCrossName() - Method in class org.brapi.v2.model.germ.BrAPIPlannedCross
-
the human readable name for a cross
- getPlateBarcode() - Method in class org.brapi.v2.model.geno.BrAPIPlate
-
A unique identifier physically attached to a `Plate`
- getPlateBarcode() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateNewRequest
-
A unique identifier physically attached to a `Plate`
- getPlateBarcodes() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
A unique identifier physically attached to the plate
- getPlateDbId() - Method in class org.brapi.v2.model.geno.BrAPIPlate
-
The ID which uniquely identifies a `Plate`
- getPlateDbId() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The ID which uniquely identifies a plate of samples
- getPlateDbId() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The ID which uniquely identifies a `Plate` of `Sample`
- getPlateDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
The ID which uniquely identifies a plate of samples
- getPlateDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
The ID which uniquely identifies a plate of samples
- getPlateFormat() - Method in class org.brapi.v2.model.geno.BrAPIPlate
-
Enum for plate formats, usually \"PLATE_96\" for a 96 well plate or \"TUBES\" for plateless format
- getPlateFormat() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateNewRequest
-
Enum for plate formats, usually \"PLATE_96\" for a 96 well plate or \"TUBES\" for plateless format
- getPlateName() - Method in class org.brapi.v2.model.geno.BrAPIPlate
-
A human readable name for a `Plate`
- getPlateName() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The human readable name of a plate
- getPlateName() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateNewRequest
-
A human readable name for a `Plate`
- getPlateName() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The human readable name of a `Plate`
- getPlateNames() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
The human readable name of a plate of samples
- getPlateNames() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
The human readable name of a `Plate` of `Samples`
- getPlates() - Method in class org.brapi.v2.model.geno.BrAPIVendorPlateSubmission
-
Array of new plates to be submitted to a vendor
- getPlates() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorPlateSubmissionRequest
-
Array of new plates to be submitted to a vendor
- getPollinationEvents() - Method in class org.brapi.v2.model.germ.BrAPICross
-
The list of pollination events that occurred for this cross
- getPollinationNumber() - Method in class org.brapi.v2.model.germ.BrAPICrossPollinationEvent
-
The unique identifier for this pollination event
- getPollinationTimeStamp() - Method in class org.brapi.v2.model.germ.BrAPICross
-
Deprecated.
- getPollinationTimeStamp() - Method in class org.brapi.v2.model.germ.BrAPICrossPollinationEvent
-
The timestamp when the pollination took place
- getPosition() - Method in class org.brapi.v2.model.geno.BrAPIMarkerPosition
-
The position of a marker within a linkage group
- getPositionCoordinateX() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitPosition
-
The X position coordinate for an observation unit.
- getPositionCoordinateXType() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitPosition
-
The type of positional coordinate used.
- getPositionCoordinateY() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitPosition
-
The Y position coordinate for an observation unit.
- getPositionCoordinateYType() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnitPosition
-
The type of positional coordinate used.
- getPositionRanges() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
The postion range to search <br/> Uses the format \"<chrom>:<start>-<end>\" where <chrom> is the chromosome name, <start> is the starting position of the range, and <end> is the ending position of the range
- getPotentialParents() - Method in class org.brapi.v2.model.germ.BrAPICrossingProject
-
A list of all the potential parents in the crossing block, available in the
crossing project <br/> If the parameter
'includePotentialParents' is false, the array
'potentialParents' should be empty, null, or excluded from the
response object.
- getPrevPageToken() - Method in class org.brapi.v2.model.BrAPITokenPagination
-
The string token used to query the previous page of data.
- getProgeny() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
A list of germplasm references that are direct children of this germplasm.
- getProgeny() - Method in class org.brapi.v2.model.germ.BrAPIProgenyNode
-
List of germplasm entities which are direct children of this germplasm
- getProgenyDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
Search for Germplasm with these children
- getProgenyDepth() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
Recursively include this number of levels down the tree in the response (children, grand-children, great-grand-children, etc)
- getProgramDbId() - Method in class org.brapi.v2.model.core.BrAPIProgram
-
The ID which uniquely identifies the program
- getProgramDbId() - Method in class org.brapi.v2.model.core.BrAPITrial
-
A program identifier to search for
- getProgramDbId() - Method in class org.brapi.v2.model.geno.BrAPIPlate
-
The ID which uniquely identifies a `Program` within the given database server
- getProgramDbId() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The ID which uniquely identifies a program within the given database server
- getProgramDbId() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateNewRequest
-
The ID which uniquely identifies a `Program` within the given database server
- getProgramDbId() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The ID which uniquely identifies a `Program` within the given database server
- getProgramDbId() - Method in class org.brapi.v2.model.germ.BrAPICrossingProject
-
the unique identifier for a program
- getProgramDbId() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
The unique DbId of the breeding program this Seed Lot belongs to
- getProgramDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The ID which uniquely identifies a program
- getProgramDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
A BrAPI Program represents the high level organization or group who is
responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
A BrAPI Program represents the high level organization or group who is
responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
A BrAPI Program represents the high level organization or group who is
responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIProgramSearchRequest
-
A program identifier to search for
- getProgramDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
A program identifier to search for
- getProgramDbIds() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
A program identifier to search for
- getProgramDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
A BrAPI Program represents the high level organization or group who is responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
A BrAPI Program represents the high level organization or group who is responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
A BrAPI Program represents the high level organization or group who is responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
A BrAPI Program represents the high level organization or group who is responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
A BrAPI Program represents the high level organization or group who is responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
A BrAPI Program represents the high level organization or group who is responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
A BrAPI Program represents the high level organization or group who is responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
A BrAPI Program represents the high level organization or group who is
responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
- getProgramDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
A BrAPI Program represents the high level organization or group who is
responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
A BrAPI Program represents the high level organization or group who is responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
A BrAPI Program represents the high level organization or group who is
responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
A program identifier to search for
- getProgramDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
A BrAPI Program represents the high level organization or group who is
responsible for conducting trials and studies.
- getProgramDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
A BrAPI Program represents the high level organization or group who is
responsible for conducting trials and studies.
- getProgramName() - Method in class org.brapi.v2.model.core.BrAPIProgram
-
Human readable name of the program
- getProgramName() - Method in class org.brapi.v2.model.core.BrAPITrial
-
Human readable name of the program
- getProgramName() - Method in class org.brapi.v2.model.germ.BrAPICrossingProject
-
the human readable name for a program
- getProgramName() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
The human readable name of the breeding program this Seed Lot belongs to
- getProgramName() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The human readable name of a program
- getProgramNames() - Method in class org.brapi.v2.model.core.request.BrAPIListSearchRequest
-
Use this parameter to only return results associated with the given program
names.
- getProgramNames() - Method in class org.brapi.v2.model.core.request.BrAPILocationSearchRequest
-
Use this parameter to only return results associated with the given program
names.
- getProgramNames() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
Use this parameter to only return results associated with the given program
names.
- getProgramNames() - Method in class org.brapi.v2.model.core.request.BrAPIProgramSearchRequest
-
A name of a program to search for
- getProgramNames() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
A name of a program to search for
- getProgramNames() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
A name of a program to search for
- getProgramNames() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
Use this parameter to only return results associated with the given program names.
- getProgramNames() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
Use this parameter to only return results associated with the given program names.
- getProgramNames() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
Use this parameter to only return results associated with the given program names.
- getProgramNames() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
Use this parameter to only return results associated with the given program names.
- getProgramNames() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
Use this parameter to only return results associated with the given program names.
- getProgramNames() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
Use this parameter to only return results associated with the given program names.
- getProgramNames() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
Use this parameter to only return results associated with the given program names.
- getProgramNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
Use this parameter to only return results associated with the given program
names.
- getProgramNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
- getProgramNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
Use this parameter to only return results associated with the given program
names.
- getProgramNames() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
Use this parameter to only return results associated with the given program names.
- getProgramNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIImageSearchRequest
-
Use this parameter to only return results associated with the given program
names.
- getProgramNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
A name of a program to search for
- getProgramNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
Use this parameter to only return results associated with the given program
names.
- getProgramNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
Use this parameter to only return results associated with the given program
names.
- getProgramType() - Method in class org.brapi.v2.model.core.BrAPIProgram
-
Human readable name of the program
- getProgramTypes() - Method in class org.brapi.v2.model.core.request.BrAPIProgramSearchRequest
-
A name of a program to search for
- getProvenance() - Method in class org.brapi.v2.model.BrAPIDataLink
-
The description of the origin or ownership of this linked data.
- getPublicationPUI() - Method in class org.brapi.v2.model.core.BrAPITrialPublications
-
Get publicationPUI
- getPublicationReference() - Method in class org.brapi.v2.model.core.BrAPITrialPublications
-
Get publicationReference
- getPublications() - Method in class org.brapi.v2.model.core.BrAPITrial
-
MIAPPE V1.1 (DM-9) Associated publication - An identifier for a literature publication where the investigation is described.
- getPublicReleaseDate() - Method in class org.brapi.v2.model.core.BrAPITrialDatasetAuthorships
-
MIAPPE V1.1 (DM-6) Public release date - Date of first public release of the dataset presently being described.
- getPublishedDate() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
The date this genome was published
- getPUI() - Method in class org.brapi.v2.model.core.BrAPIStudyExperimentalDesign
-
MIAPPE V1.1 (DM-23) Type of experimental design - Type of experimental design of the study, in the form of an accession number from the Crop Ontology.
- getPUI() - Method in class org.brapi.v2.model.core.BrAPIStudyGrowthFacility
-
MIAPPE V1.1 (DM-27) Type of growth facility - Type of growth facility in which the study was carried out, in the form of an accession number from the Crop Ontology.
- getRdfValue() - Method in class org.brapi.v2.model.pheno.BrAPIEventParameters
-
Deprecated.
- getReferenceBases() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
The reference bases for this variant.
- getReferenceDbId() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
The reference ID.
- getReferenceDbId() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
The unique identifier for a Reference
- getReferenceDbId() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
Only return variants on this reference.
- getReferenceDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
The `References` to search.
- getReferenceDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
The unique identifier representing a genotype Reference
- getReferenceDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
The unique identifier representing a genotype `Reference`
- getReferenceId() - Method in class org.brapi.v2.model.BrAPIExternalReference
-
The external reference ID.
- getReferenceID() - Method in class org.brapi.v2.model.BrAPIExternalReference
-
Deprecated.
- getReferenceName() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
The unique name of this reference within the Reference Set (e.g.
- getReferenceName() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
The reference on which this variant occurs.
- getReferenceSetDbId() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
- getReferenceSetDbId() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSet
-
The reference set ID.
- getReferenceSetDbId() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
The unique identifier for a ReferenceSet
- getReferenceSetDbId() - Method in class org.brapi.v2.model.geno.BrAPIVariantSet
-
The ID of the reference set that describes the sequences used by the variants in this set.
- getReferenceSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
The `ReferenceSets` to search.
- getReferenceSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
The `ReferenceSets` to search.
- getReferenceSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
The unique identifier representing a genotype ReferenceSet
- getReferenceSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
The unique identifier representing a genotype `ReferenceSet`
- getReferenceSetName() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
The human readable name of a `ReferenceSet`
- getReferenceSetName() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSet
-
The reference set name.
- getReferenceSetName() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
The human readable name of the ReferenceSet
- getReferenceSource() - Method in class org.brapi.v2.model.BrAPIExternalReference
-
An identifier for the source system or database of this reference
- getRemarks() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (REMARKS) 28.
- getRequiredServiceInfo() - Method in class org.brapi.v2.model.geno.BrAPIVendorOrder
-
A map of additional data required by the requested service.
- getRequiredServiceInfo() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequest
-
A map of additional data required by the requested service.
- getResult() - Method in class org.brapi.v2.model.BrAPIAcceptedSearchResponse
-
Get result
- getResult() - Method in interface org.brapi.v2.model.BrAPIResponse
-
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPICommonCropNamesResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPIListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPIListsListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPIListsSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPILocationListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPILocationSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPIPersonListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPIPersonSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPIProgramListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPIProgramSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPISeasonListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPISeasonSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPIServerInfoResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPIStudyListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPIStudySingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPIStudyTypesResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPITrialListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.core.response.BrAPITrialSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIAlleleMatrixResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPICallSetResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPICallSetsListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPICallsListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIGenomeMapListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIGenomeMapSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPILinkageGroupListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIMarkerPositionListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIPlateListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIPlateSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIReferenceBasesResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIReferenceSetsListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIReferenceSetsSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIReferenceSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIReferencesListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPISampleListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPISampleSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIVariantSetResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIVariantSetsListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIVariantSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIVariantsListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorOrderListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorOrderStatusResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorOrderSubmissionSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorPlateListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorPlateSubmissionIdSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorPlateSubmissionSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorResultFileListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorSpecificationSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIBreedingMethodListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIBreedingMethodSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPICrossesListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPICrossingProjectsListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPICrossingProjectsSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeCategoryListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeValueListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmAttributeValueSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmMCPDResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmPedigreeResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmProgenyResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIGermplasmSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIPedigreeListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPIPlannedCrossesListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPISeedLotListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPISeedLotSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.germ.response.BrAPISeedLotTransactionListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIEventsResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIImageDeleteResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIImageListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIImageSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIMethodListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIMethodSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationDeleteResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationLevelListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationTableResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationUnitListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationUnitSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationUnitTableResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationVariableListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIObservationVariableSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIOntologyListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIOntologySingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIScaleListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPIScaleSingleResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPITraitListResponse
-
Get result
- getResult() - Method in class org.brapi.v2.model.pheno.response.BrAPITraitSingleResponse
-
Get result
- getRow() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The Row identifier for this samples location in the plate
- getRow() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
The Row identifier for this samples location in the plate
- getRow() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The Row identifier for this `Sample` location in the `Plate`
- getRow() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
The Row identifier for this samples location in the plate
- getSafetyDuplicateInstitutes() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
Get safetyDuplicateInstitutes
- getSampleBarcode() - Method in class org.brapi.v2.model.geno.BrAPISample
-
A unique identifier physically attached to the sample
- getSampleBarcode() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
A unique identifier physically attached to the `Sample`
- getSampleDbId() - Method in class org.brapi.v2.model.geno.BrAPICallSet
-
The Biosample entity the call set data was generated from.
- getSampleDbId() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The ID which uniquely identifies a sample MIAPPE V1.1 (DM-76) Sample ID - Unique identifier for the sample.
- getSampleDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
A list of IDs which uniquely identify `Samples` within the given database server
- getSampleDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
Return only call sets generated from the provided Biosample IDs.
- getSampleDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
The ID which uniquely identifies a sample
- getSampleDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
The ID which uniquely identifies a sample
- getSampleDescription() - Method in class org.brapi.v2.model.geno.BrAPISample
-
Description of a sample MIAPPE V1.1 (DM-79) Sample description - Any information not captured by the other sample fields, including quantification, sample treatments and processing.
- getSampleDescription() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
Description of a `Sample` <br>MIAPPE V1.1 (DM-79) Sample description - Any information not captured by the other sample fields, including quantification, sample treatments and processing.
- getSampleGroupDbId() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The ID which uniquely identifies a group of samples
- getSampleGroupDbId() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The ID which uniquely identifies a group of `Samples`
- getSampleGroupDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
The unique identifier for a group of related Samples
- getSampleGroupDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
The unique identifier for a group of related `Samples`
- getSampleName() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The name of the sample
- getSampleName() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The human readable name of the `Sample`
- getSampleNames() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
Return only call sets generated from the provided Biosample human readable names.
- getSampleNames() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
The human readable name of the sample
- getSampleNames() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
The human readable name of the `Sample`
- getSamplePUI() - Method in class org.brapi.v2.model.geno.BrAPISample
-
A permanent unique identifier for the sample (DOI, URL, UUID, etc) MIAPPE V1.1 (DM-81) External ID - An identifier for the sample in a persistent repository, comprising the name of the repository and the accession number of the observation unit therein.
- getSamplePUI() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
A permanent unique identifier for the `Sample` (DOI, URL, UUID, etc) <br> MIAPPE V1.1 (DM-81) External ID - An identifier for the sample in a persistent repository, comprising the name of the repository and the accession number of the observation unit therein.
- getSamples() - Method in class org.brapi.v2.model.geno.BrAPIVendorPlate
-
Get samples
- getSamples() - Method in class org.brapi.v2.model.geno.BrAPIVendorPlateSubmissionPlates
-
Get samples
- getSampleSubmissionFormat() - Method in class org.brapi.v2.model.geno.BrAPIVendorPlate
-
Get sampleSubmissionFormat
- getSampleSubmissionFormat() - Method in class org.brapi.v2.model.geno.BrAPIVendorPlateSubmissionPlates
-
Get sampleSubmissionFormat
- getSampleTimestamp() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The date and time a sample was collected from the field MIAPPE V1.1 (DM-80) Collection date - The date and time when the sample was collected / harvested
- getSampleTimestamp() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The date and time a `Sample` was collected from the field <br> MIAPPE V1.1 (DM-80) Collection date - The date and time when the sample was collected / harvested
- getSampleType() - Method in class org.brapi.v2.model.geno.BrAPIPlate
-
The type of samples taken.
- getSampleType() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The type of sample taken.
- getSampleType() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateNewRequest
-
The type of samples taken.
- getSampleType() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The type of `Sample` taken.
- getSampleType() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorPlateSubmissionRequest
-
The type of Samples being submitted
- getScale() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Get scale
- getScale() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Get scale
- getScaleDbId() - Method in class org.brapi.v2.model.pheno.BrAPIScale
-
Unique identifier of the scale.
- getScaleDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
The unique identifier for a Scale
- getScaleDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of scales to filter search results
- getScaleDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The unique identifier for a Scale
- getScaleName() - Method in class org.brapi.v2.model.pheno.BrAPIScale
-
- getScaleNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
Name of the scale <br/>MIAPPE V1.1 (DM-92) Scale Name of the scale
associated with the variable
- getScaleNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
Name of the scale <br/>MIAPPE V1.1 (DM-92) Scale Name of the scale
associated with the variable
- getScalePUI() - Method in class org.brapi.v2.model.pheno.BrAPIScale
-
The Permanent Unique Identifier of a Scale, usually in the form of a URI
- getScalePUIs() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
The Permanent Unique Identifier of a Scale, usually in the form of a URI
- getScalePUIs() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The Permanent Unique Identifier of a Scale, usually in the form of a URI
- getScientificName() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
Full scientific binomial format name.
- getScientificType() - Method in class org.brapi.v2.model.BrAPIDataLink
-
The general type of data.
- getScientist() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Name of scientist submitting the variable.
- getScientist() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Name of scientist submitting the variable.
- getSearchDateRangeEnd() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
The end of the overlapping search date range.
- getSearchDateRangeStart() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
The start of the overlapping search date range.
- getSearchResultsDbId() - Method in class org.brapi.v2.model.BrAPIAcceptedSearchResponseResult
-
Get searchResultsDbId
- getSeason() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
Get season
- getSeasonDbId() - Method in class org.brapi.v2.model.core.BrAPISeason
-
The ID which uniquely identifies a season.
- getSeasonDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
The ID which uniquely identifies a season
- getSeasonDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
The year or Phenotyping campaign of a multi-annual study (trees, grape, ...)
- getSeasonDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
The year or Phenotyping campaign of a multi-annual study (trees, grape, ...)
- getSeasonName() - Method in class org.brapi.v2.model.core.BrAPISeason
-
Name of the season.
- getSeasons() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
List of seasons over which this study was performed.
- getSeedLotDbId() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
Unique DbId for the Seed Lot
- getSeedLotDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The unique identifier for the originating Seed Lot
- getSeedLotDescription() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
A general description of this Seed Lot
- getSeedLotName() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
A human readable name for this Seed Lot
- getSeedLotName() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The unique identifier for the originating Seed Lot
- getSeedSource() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
The source of the seed
- getSeedSourceDescription() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
Description of the material source
- getSepPhased() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrix
-
The string used as a separator for phased allele calls.
- getSepPhased() - Method in class org.brapi.v2.model.geno.BrAPIAvailableFormat
-
The string used as a separator for phased allele calls.
- getSepPhased() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
The string used as a separator for phased allele calls.
- getSepPhased() - Method in class org.brapi.v2.model.geno.request.BrAPICallsSearchRequest
-
The string used as a separator for phased allele calls.
- getSepPhased() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsExtractRequest
-
The string used as a separator for phased allele calls.
- getSepPhased() - Method in class org.brapi.v2.model.geno.response.BrAPICallsListResponseResult
-
The string used as a separator for phased allele calls.
- getSepUnphased() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrix
-
The string used as a separator for unphased allele calls.
- getSepUnphased() - Method in class org.brapi.v2.model.geno.BrAPIAvailableFormat
-
The string used as a separator for unphased allele calls.
- getSepUnphased() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
The string used as a separator for unphased allele calls.
- getSepUnphased() - Method in class org.brapi.v2.model.geno.request.BrAPICallsSearchRequest
-
The string used as a separator for unphased allele calls.
- getSepUnphased() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsExtractRequest
-
The string used as a separator for unphased allele calls.
- getSepUnphased() - Method in class org.brapi.v2.model.geno.response.BrAPICallsListResponseResult
-
The string used as a separator for unphased allele calls.
- getSequence() - Method in class org.brapi.v2.model.geno.BrAPIReferenceBases
-
A sub-string of the bases that make up this reference.
- getServerDescription() - Method in class org.brapi.v2.model.core.BrAPIServerInfo
-
A description of this server
- getServerName() - Method in class org.brapi.v2.model.core.BrAPIServerInfo
-
The name of this server
- getService() - Method in class org.brapi.v2.model.core.BrAPIService
-
- getServiceDescription() - Method in class org.brapi.v2.model.geno.BrAPIVendorSpecificationService
-
Description of the vendor platform
- getServiceId() - Method in class org.brapi.v2.model.geno.BrAPIVendorSpecificationService
-
Unique identifier for this service
- getServiceIds() - Method in class org.brapi.v2.model.geno.BrAPIVendorOrder
-
A list of unique, alpha-numeric ID which identify the requested services to be applied to this order.
- getServiceIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequest
-
A list of unique, alpha-numeric ID which identify the requested services to be applied to this order.
- getServiceName() - Method in class org.brapi.v2.model.geno.BrAPIVendorSpecificationService
-
The human readable name of a platform
- getServicePlatformMarkerType() - Method in class org.brapi.v2.model.geno.BrAPIVendorSpecificationService
-
The type of markers used in this services platform
- getServicePlatformName() - Method in class org.brapi.v2.model.geno.BrAPIVendorSpecificationService
-
The technology platform used by this service
- getServices() - Method in class org.brapi.v2.model.geno.BrAPIVendorSpecification
-
List of platform specifications available at the vendor
- getShipmentForms() - Method in class org.brapi.v2.model.geno.BrAPIVendorOrderSubmission
-
Array of paper forms which need to be printed and included with the physical shipment
- getSiblings() - Method in class org.brapi.v2.model.germ.BrAPIPedigreeNode
-
A list of sibling germplasm references in the pedigree tree for this germplasm.
- getSiteStatus() - Method in class org.brapi.v2.model.core.BrAPILocation
-
Description of the accessibility of the location (ex.
- getSlope() - Method in class org.brapi.v2.model.core.BrAPILocation
-
Describes the approximate slope (height/distance) of the location.
- getSoftware() - Method in class org.brapi.v2.model.geno.BrAPIAnalysis
-
The software run to generate this analysis.
- getSortBy() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
Name of one of the fields within the study object on which results can be
sorted
- getSortBy() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
- getSortOrder() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
Order results should be sorted.
- getSortOrder() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
- getSourceAccessions() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) which must
include a version number, e.g.
- getSourceAccessions() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSet
-
All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, e.g.
- getSourceCollection() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
The description of the source where this material was originally collected
(wild, nursery, etc)
- getSourceDivergence() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
The `sourceDivergence` is the fraction of non-indel bases that do not match
the reference this message was derived from.
- getSourceGermplasm() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
All known corresponding Germplasm
- getSourceGermplasm() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSet
-
All known corresponding Germplasm
- getSourceName() - Method in class org.brapi.v2.model.germ.BrAPITaxonID
-
The human readable name of the taxonomy provider
- getSourceURI() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
The URI from which the sequence was obtained.
- getSourceURI() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSet
-
Specifies a FASTA format file/string.
- getSpatialReferenceSystem() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPDCollectingInfoCollectingSite
-
MCPD (v2.1) (COORDDATUM) 15.6 The geodetic datum or spatial reference system upon which the coordinates given in decimal latitude and decimal longitude are based (e.g.
- getSpecies() - Method in class org.brapi.v2.model.geno.BrAPIReference
-
Get species
- getSpecies() - Method in class org.brapi.v2.model.geno.BrAPIReferenceSet
-
Get species
- getSpecies() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
Specific epithet portion of the scientific name in lowercase letters.
- getSpecies() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (SPECIES) 6.
- getSpecies() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
List of Species names to identify germplasm
- getSpecies() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
List of Species names to identify germplasm
- getSpeciesAuthority() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
The authority organization responsible for tracking and maintaining the
species name MCPD (v2.1) (SPAUTHOR) 7.
- getSpeciesAuthority() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (SPAUTHOR) 7.
- getSpeciesName() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
Scientific species name
- getSpeciesName() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
Scientific species name
- getSpecificRequirements() - Method in class org.brapi.v2.model.geno.BrAPIVendorSpecificationService
-
Additional arbitrary requirements for a particular platform
- getStart() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
This field is optional and may be ignored if there is no relevant map or
reference to be associated with.
- getStart() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
The beginning of the window (0-based, inclusive) for which overlapping variants should be returned.
- getStartDate() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
The date this study started MIAPPE V1.1 (DM-14) Start date of study - Date
and, if relevant, time when the experiment started
- getStartDate() - Method in class org.brapi.v2.model.core.BrAPITrial
-
The date this trial started
- getStartDate() - Method in class org.brapi.v2.model.pheno.BrAPIEventDateRange
-
The begining of a continous or regularly repetitive event <br/>MIAPPE
V1.1 (DM-68) Event date - Date and time of the event.
- getStatus() - Method in class org.brapi.v2.model.BrAPIMetadata
-
The status field contains a list of informational status messages from the
server.
- getStatus() - Method in class org.brapi.v2.model.geno.response.BrAPIVendorOrderStatusResponseResult
-
Get status
- getStatus() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Variable status.
- getStatus() - Method in class org.brapi.v2.model.germ.BrAPIPlannedCross
-
The status of this planned cross.
- getStatus() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Variable status.
- getStatus() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
Trait status (examples: \"recommended\", \"obsolete\", \"legacy\", etc.)
- getStorageLocation() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
Description the storage location
- getStorageTypeCodes() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (STORAGE) 26.
- getStorageTypes() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
The type of storage this germplasm is kept in at a genebank.
- getStudyCode() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
A short human readable code for a study
- getStudyCodes() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
A short human readable code for a study
- getStudyDbId() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
The ID which uniquely identifies a study within the given database server
MIAPPE V1.1 (DM-11) Study unique ID - Unique identifier comprising the name
or identifier for the institution/database hosting the submission of the
study data, and the identifier of the study in that institution.
- getStudyDbId() - Method in class org.brapi.v2.model.geno.BrAPICallSet
-
The ID which uniquely identifies a study within the given database server
- getStudyDbId() - Method in class org.brapi.v2.model.geno.BrAPIPlate
-
The ID which uniquely identifies a `Study` within the given database server
- getStudyDbId() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The ID which uniquely identifies a study within the given database server
- getStudyDbId() - Method in class org.brapi.v2.model.geno.BrAPIVariantSet
-
The ID of the dataset this variant set belongs to.
- getStudyDbId() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateNewRequest
-
The ID which uniquely identifies a `Study` within the given database server
- getStudyDbId() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The ID which uniquely identifies a `Study` within the given database server
- getStudyDbId() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
Deprecated.
- getStudyDbId() - Method in class org.brapi.v2.model.pheno.BrAPIEvent
-
The study in which the event occurred
- getStudyDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
The ID which uniquely identifies a study within the given database server
- getStudyDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The ID which uniquely identifies a study within the given database server
- getStudyDbId() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
Deprecated.
- getStudyDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsExtractRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
List of study identifiers to search for
- getStudyDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
List of study identifiers to search for
- getStudyDescription() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
The description of this study MIAPPE V1.1 (DM-13) Study description -
Human-readable text describing the study
- getStudyName() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
The human readable name for a study MIAPPE V1.1 (DM-12) Study title -
Human-readable text summarising the study
- getStudyName() - Method in class org.brapi.v2.model.pheno.BrAPIEvent
-
The human readable name of a study
- getStudyName() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The human readable name for a study
- getStudyNames() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsExtractRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
List of study names to filter search results
- getStudyNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
List of study names to filter search results
- getStudyPUI() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
A permanent unique identifier associated with this study data.
- getStudyPUIs() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
Permanent unique identifier associated with study data.
- getStudyType() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
The type of study being performed.
- getStudyTypes() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
The type of study being performed.
- getSubmissionDate() - Method in class org.brapi.v2.model.core.BrAPITrialDatasetAuthorships
-
MIAPPE V1.1 (DM-5) Submission date - Date of submission of the dataset presently being described to a host repository.
- getSubmissionId() - Method in class org.brapi.v2.model.geno.BrAPIVendorPlateSubmissionId
-
A unique, alpha-numeric ID which identifies a set of plates which have been successfully submitted.
- getSubmissionTimestamp() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Timestamp when the Variable was added (ISO 8601)
- getSubmissionTimestamp() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Timestamp when the Variable was added (ISO 8601)
- getSubtaxa() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
Subtaxon can be used to store any additional taxonomic identifier.
- getSubtaxaAuthority() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
The authority organization responsible for tracking and maintaining the
subtaxon information MCPD (v2.1) (SUBTAUTHOR) 9.
- getSubtaxon() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (SUBTAXA) 8.
- getSubtaxonAuthority() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmMCPD
-
MCPD (v2.1) (SUBTAUTHOR) 9.
- getSvlen() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
Length of the - if labeled as such in variant_type - structural variation.
- getSynonym() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmSynonyms
-
Alternative name or ID used to reference this germplasm
- getSynonyms() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
List of alternative names or IDs used to reference this germplasm
- getSynonyms() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Other variable names
- getSynonyms() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
List of alternative names or IDs used to reference this germplasm
- getSynonyms() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
List of alternative names or IDs used to reference this germplasm
- getSynonyms() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Other variable names
- getSynonyms() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
Other trait names
- getTakenBy() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The name or identifier of the entity which took the sample from the field
- getTakenBy() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The name or identifier of the entity which took the `Sample` from the field
- getTaxonId() - Method in class org.brapi.v2.model.germ.BrAPITaxonID
-
The identifier (name, ID, URI) of a particular taxonomy within the source provider
- getTaxonIds() - Method in class org.brapi.v2.model.germ.BrAPIGermplasm
-
The list of IDs for this SPECIES from different sources.
- getTaxonomyOntologyReference() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
Get taxonomyOntologyReference
- getTaxonomyOntologyReference() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
Get taxonomyOntologyReference
- getTerm() - Method in class org.brapi.v2.model.geno.BrAPIOntologyTerm
-
Ontology term - the label of the ontology term the termId is pointing to.
- getTermURI() - Method in class org.brapi.v2.model.geno.BrAPIOntologyTerm
-
Ontology term identifier - the CURIE for an ontology term.
- getTimestamp() - Method in class org.brapi.v2.model.core.BrAPIStudyLastUpdate
-
Get timestamp
- getTissueType() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The type of tissue sampled.
- getTissueType() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
The type of tissue in this sample.
- getTissueType() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The type of tissue sampled.
- getTissueType() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
The type of tissue in this sample.
- getTissueTypeOntologyReference() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
Get tissueTypeOntologyReference
- getTissueTypeOntologyReference() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
Get tissueTypeOntologyReference
- getTopography() - Method in class org.brapi.v2.model.core.BrAPILocation
-
Describes the topography of the land at the location.
- getToSeedLotDbId() - Method in class org.brapi.v2.model.germ.BrAPISeedLotTransaction
-
The identifier for the Seed Lot being transfered into
- getTotalCount() - Method in class org.brapi.v2.model.BrAPIPagination
-
The total number of elements that are available on the server and match the
requested query paramters.
- getTotalCount() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrixPagination
-
The total number of elements that are available on the server and match the requested query parameters.
- getTotalPages() - Method in class org.brapi.v2.model.BrAPIPagination
-
The total number of pages of elements available on the server.
- getTotalPages() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrixPagination
-
The total number of pages of elements available on the server.
- getTrait() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
Get trait
- getTrait() - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-
Get trait
- getTraitAttributePUIs() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
The Permanent Unique Identifier of a Trait Attribute, usually in the form of
a URI <br/>A trait can be decomposed as \"Trait\" =
\"Entity\" + \"Attribute\", the attribute is the observed
feature (or characteristic) of the entity e.g., for \"grain
colour\", attribute = \"colour\"
- getTraitAttributePUIs() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The Permanent Unique Identifier of a Trait Attribute, usually in the form of
a URI <br/>A trait can be decomposed as \"Trait\" =
\"Entity\" + \"Attribute\", the attribute is the observed
feature (or characteristic) of the entity e.g., for \"grain
colour\", attribute = \"colour\"
- getTraitAttributes() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
A trait can be decomposed as \"Trait\" = \"Entity\"
+ \"Attribute\", the attribute is the observed feature (or
characteristic) of the entity e.g., for \"grain colour\", attribute
= \"colour\"
- getTraitAttributes() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
A trait can be decomposed as \"Trait\" = \"Entity\"
+ \"Attribute\", the attribute is the observed feature (or
characteristic) of the entity e.g., for \"grain colour\", attribute
= \"colour\"
- getTraitClass() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
Trait class.
- getTraitClasses() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
List of trait classes to filter search results
- getTraitClasses() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of trait classes to filter search results
- getTraitClasses() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
List of trait classes to filter search results
- getTraitDbId() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
The ID which uniquely identifies a trait
- getTraitDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
The unique identifier for a Trait
- getTraitDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeValueSearchRequest
-
List of trait unique ID to filter search results
- getTraitDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The unique identifier for a Trait
- getTraitDescription() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
The description of a trait
- getTraitEntities() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
A trait can be decomposed as \"Trait\" = \"Entity\"
+ \"Attribute\", the entity is the part of the plant that the trait
refers to e.g., for \"grain colour\", entity =
\"grain\"
- getTraitEntities() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
A trait can be decomposed as \"Trait\" = \"Entity\"
+ \"Attribute\", the entity is the part of the plant that the trait
refers to e.g., for \"grain colour\", entity =
\"grain\"
- getTraitEntityPUIs() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
The Permanent Unique Identifier of a Trait Entity, usually in the form of a
URI <br/>A trait can be decomposed as \"Trait\" =
\"Entity\" + \"Attribute\", the entity is the part of the
plant that the trait refers to e.g., for \"grain colour\", entity
= \"grain\"
- getTraitEntityPUIs() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The Permanent Unique Identifier of a Trait Entity, usually in the form of a
URI <br/>A trait can be decomposed as \"Trait\" =
\"Entity\" + \"Attribute\", the entity is the part of the
plant that the trait refers to e.g., for \"grain colour\", entity
= \"grain\"
- getTraitName() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
The human readable name of a trait MIAPPE V1.1 (DM-86) Trait - Name of the
(plant or environmental) trait under observation
- getTraitNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
The human readable name of a trait <br/>MIAPPE V1.1 (DM-86) Trait -
Name of the (plant or environmental) trait under observation
- getTraitNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The human readable name of a trait <br/>MIAPPE V1.1 (DM-86) Trait -
Name of the (plant or environmental) trait under observation
- getTraitPUI() - Method in class org.brapi.v2.model.pheno.BrAPITrait
-
The Permanent Unique Identifier of a Trait, usually in the form of a URI
- getTraitPUIs() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
The Permanent Unique Identifier of a Trait, usually in the form of a URI
- getTraitPUIs() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The Permanent Unique Identifier of a Trait, usually in the form of a URI
- getTransactionDbId() - Method in class org.brapi.v2.model.germ.BrAPISeedLotTransaction
-
Unique DbId for the Seed Lot Transaction
- getTransactionDescription() - Method in class org.brapi.v2.model.germ.BrAPISeedLotTransaction
-
A general description of this Seed Lot Transaction
- getTransactionTimestamp() - Method in class org.brapi.v2.model.germ.BrAPISeedLotTransaction
-
The time stamp for when the transaction occured
- getTreatments() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
List of treatments applied to an observation unit.
- getTrialDbId() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
The ID which uniquely identifies a trial
- getTrialDbId() - Method in class org.brapi.v2.model.core.BrAPITrial
-
The ID which uniquely identifies a trial MIAPPE V1.1 (DM-2) Investigation unique ID - Identifier comprising the unique name of the institution/database hosting the submission of the investigation data, and the accession number of the investigation in that institution.
- getTrialDbId() - Method in class org.brapi.v2.model.geno.BrAPIPlate
-
The ID which uniquely identifies a `Trial` within the given database server
- getTrialDbId() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The ID which uniquely identifies a trial within the given database server
- getTrialDbId() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateNewRequest
-
The ID which uniquely identifies a `Trial` within the given database server
- getTrialDbId() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The ID which uniquely identifies a `Trial` within the given database server
- getTrialDbId() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The ID which uniquely identifies a trial
- getTrialDbIds() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDbIds() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The ID which uniquely identifies a trial to search for
- getTrialDescription() - Method in class org.brapi.v2.model.core.BrAPITrial
-
The human readable description of a trial MIAPPE V1.1 (DM-4) Investigation description - Human-readable text describing the investigation in more detail.
- getTrialName() - Method in class org.brapi.v2.model.core.BrAPIStudy
-
The human readable name of a trial
- getTrialName() - Method in class org.brapi.v2.model.core.BrAPITrial
-
The human readable name of a trial MIAPPE V1.1 (DM-3) Investigation title - Human-readable string summarising the investigation.
- getTrialName() - Method in class org.brapi.v2.model.pheno.BrAPIObservationUnit
-
The human readable name of a trial
- getTrialNames() - Method in class org.brapi.v2.model.core.request.BrAPIStudySearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.geno.request.BrAPIPlateSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.geno.request.BrAPIReferenceSetsSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.geno.request.BrAPIReferencesSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.geno.request.BrAPISampleSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmAttributeSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.germ.request.BrAPIGermplasmSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.germ.request.BrAPIPedigreeSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationUnitSearchRequest
-
The human readable name of a trial to search for
- getTrialNames() - Method in class org.brapi.v2.model.pheno.request.BrAPIObservationVariableSearchRequest
-
The human readable name of a trial to search for
- getTrialPUI() - Method in class org.brapi.v2.model.core.BrAPITrial
-
A permanent identifier for a trial.
- getTrialPUIs() - Method in class org.brapi.v2.model.core.request.BrAPITrialSearchRequest
-
A permanent identifier for a trial.
- getType() - Method in class org.brapi.v2.model.BrAPIOntologyReferenceDocumentationLinks
-
Get type
- getType() - Method in class org.brapi.v2.model.core.BrAPIContact
-
The type of person this contact represents (ex: Coordinator, Scientist, PI, etc.) MIAPPE V1.1 (DM-34) Person role - Type of contribution of the person to the investigation
- getType() - Method in class org.brapi.v2.model.geno.BrAPIAnalysis
-
The type of analysis.
- getType() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
The type of map this represents, usually \"Genetic\"
- getType() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmSynonyms
-
A descriptive classification for this synonym
- getUnit() - Method in class org.brapi.v2.model.core.BrAPIEnvironmentParameter
-
Unit of the value for this parameter
- getUnit() - Method in class org.brapi.v2.model.geno.BrAPIGenomeMap
-
The units used to describe the data in this map
- getUnitPUI() - Method in class org.brapi.v2.model.core.BrAPIEnvironmentParameter
-
URI pointing to an ontology class for the unit
- getUnits() - Method in class org.brapi.v2.model.geno.BrAPIMeasurement
-
Units (example: \"ng/ul\")
- getUnits() - Method in class org.brapi.v2.model.germ.BrAPISeedLot
-
A description of the things being counted in a BrAPISeedLot (seeds, bulbs,
kg, tree, etc)
- getUnits() - Method in class org.brapi.v2.model.germ.BrAPISeedLotTransaction
-
Description of the things being transfered in this transaction (seeds, bulbs, kg, etc)
- getUnits() - Method in class org.brapi.v2.model.pheno.BrAPIEventParameters
-
The units or data type of the 'value'.
- getUnits() - Method in class org.brapi.v2.model.pheno.BrAPIScale
-
This field can be used to describe the units used for this scale.
- getUnknownString() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrix
-
The string used as a representation for missing data.
- getUnknownString() - Method in class org.brapi.v2.model.geno.BrAPIAvailableFormat
-
The string used as a representation for missing data.
- getUnknownString() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
The string used as a representation for missing data.
- getUnknownString() - Method in class org.brapi.v2.model.geno.request.BrAPICallsSearchRequest
-
The string used as a representation for missing data.
- getUnknownString() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsExtractRequest
-
The string used as a representation for missing data.
- getUnknownString() - Method in class org.brapi.v2.model.geno.response.BrAPICallsListResponseResult
-
The string used as a representation for missing data.
- getUpdated() - Method in class org.brapi.v2.model.geno.BrAPIAnalysis
-
The time at which this record was last updated, in ISO 8601 format.
- getUpdated() - Method in class org.brapi.v2.model.geno.BrAPICallSet
-
The time at which this call set was last updated
- getUpdated() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
The time at which this variant was last updated.
- getUploadedBy() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
The name or id of the user who uploaded the observation to the database
system
- getUrl() - Method in class org.brapi.v2.model.BrAPIDataLink
-
MIAPPE V1.1 (DM-37) Data file link - Link to the data file (or digital object) in a public database or in a persistent institutional repository; or identifier of the data file when submitted together with the MIAPPE submission.
- getURL() - Method in class org.brapi.v2.model.BrAPIOntologyReferenceDocumentationLinks
-
Get URL
- getUserID() - Method in class org.brapi.v2.model.core.BrAPIPerson
-
A systems user ID associated with this person.
- getUserIDs() - Method in class org.brapi.v2.model.core.request.BrAPIPersonSearchRequest
-
A systems user ID associated with this person.
- getValidValues() - Method in class org.brapi.v2.model.pheno.BrAPIScale
-
Get validValues
- getValue() - Method in class org.brapi.v2.model.core.BrAPIEnvironmentParameter
-
Numerical or categorical value
- getValue() - Method in enum org.brapi.v2.model.geno.BrAPIDataTypeEnum
-
- getValue() - Method in enum org.brapi.v2.model.geno.BrAPIDimensionEnum
-
- getValue() - Method in enum org.brapi.v2.model.geno.BrAPIFileFormatEnum
-
- getValue() - Method in class org.brapi.v2.model.geno.BrAPIMeasurement
-
Value (example: \"2.3\")
- getValue() - Method in enum org.brapi.v2.model.geno.BrAPISampleTypeEnum
-
- getValue() - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttributeValue
-
The value of this attribute for a given germplasm
- getValue() - Method in class org.brapi.v2.model.pheno.BrAPIEventParameters
-
The single value of this event parameter.
- getValue() - Method in class org.brapi.v2.model.pheno.BrAPIObservation
-
The value of the data collected as an observation
- getValue() - Method in class org.brapi.v2.model.pheno.BrAPIScaleValidValuesCategories
-
The actual value for a category
- getValueDescription() - Method in class org.brapi.v2.model.pheno.BrAPIEventParameters
-
If the event parameter 'unit' field is 'code', then use
'valueDescription' to add a human readable description to the
value.
- getValuePUI() - Method in class org.brapi.v2.model.core.BrAPIEnvironmentParameter
-
URI pointing to an ontology class for the parameter value
- getValues() - Method in class org.brapi.v2.model.geno.BrAPIListValue
-
Repeated field of dynamically typed values.
- getValuesByDate() - Method in class org.brapi.v2.model.pheno.BrAPIEventParameters
-
An array of values corresponding to each timestamp in the
'discreteDates' array of this event.
- getVariantCount() - Method in class org.brapi.v2.model.geno.BrAPIVariantSet
-
The number of Variants included in this VariantSet
- getVariantDbId() - Method in class org.brapi.v2.model.geno.BrAPICall
-
The ID of the variant this call belongs to.
- getVariantDbId() - Method in class org.brapi.v2.model.geno.BrAPIMarkerPosition
-
Internal db identifier
- getVariantDbId() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
The variant ID.
- getVariantDbIds() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrix
-
A list of unique identifiers for the Variants contained in the matrix response.
- getVariantDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
A list of IDs which uniquely identify `Variants` within the given database server
- getVariantDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPICallsSearchRequest
-
The Variant to search.
- getVariantDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIMarkerPositionSearchRequest
-
Internal db identifier
- getVariantDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsExtractRequest
-
The Variant to search.
- getVariantDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
The Variant to search.
- getVariantDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
- getVariantName() - Method in class org.brapi.v2.model.geno.BrAPICall
-
The name of the variant this call belongs to.
- getVariantName() - Method in class org.brapi.v2.model.geno.BrAPIMarkerPosition
-
The human readable name for a marker
- getVariantNames() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
Names for the variant, for example a RefSNP ID.
- getVariantSetDbId() - Method in class org.brapi.v2.model.geno.BrAPICall
-
The unique identifier for a VariantSet
- getVariantSetDbId() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
An array of `VariantSet` IDs this variant belongs to.
- getVariantSetDbId() - Method in class org.brapi.v2.model.geno.BrAPIVariantSet
-
The variant set ID.
- getVariantSetDbIds() - Method in class org.brapi.v2.model.geno.BrAPIAlleleMatrix
-
A list of unique identifiers for the VariantSets contained in the matrix response.
- getVariantSetDbIds() - Method in class org.brapi.v2.model.geno.BrAPICallSet
-
The IDs of the variant sets this call set has calls in.
- getVariantSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIAlleleMatrixSearchRequest
-
A list of IDs which uniquely identify `VariantSets` within the given database server
- getVariantSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPICallSetsSearchRequest
-
The VariantSet to search.
- getVariantSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPICallsSearchRequest
-
The VariantSet to search.
- getVariantSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsExtractRequest
-
The VariantSet to search.
- getVariantSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantSetsSearchRequest
-
The VariantSet to search.
- getVariantSetDbIds() - Method in class org.brapi.v2.model.geno.request.BrAPIVariantsSearchRequest
-
- getVariantSetName() - Method in class org.brapi.v2.model.geno.BrAPICall
-
The human readable name for a VariantSet
- getVariantSetName() - Method in class org.brapi.v2.model.geno.BrAPIVariantSet
-
The variant set name.
- getVariantType() - Method in class org.brapi.v2.model.geno.BrAPIVariant
-
The \"variant_type\" is used to denote e.g.
- getVendorAddress() - Method in class org.brapi.v2.model.geno.BrAPIVendorContact
-
The street address of the vendor
- getVendorCity() - Method in class org.brapi.v2.model.geno.BrAPIVendorContact
-
The name of the city where the vendor is located
- getVendorContact() - Method in class org.brapi.v2.model.geno.BrAPIVendorSpecification
-
Get vendorContact
- getVendorContactName() - Method in class org.brapi.v2.model.geno.BrAPIVendorContact
-
The name or identifier of the primary vendor contact
- getVendorCountry() - Method in class org.brapi.v2.model.geno.BrAPIVendorContact
-
The name of the country where the vendor is located
- getVendorDescription() - Method in class org.brapi.v2.model.geno.BrAPIVendorContact
-
A description of the vendor
- getVendorEmail() - Method in class org.brapi.v2.model.geno.BrAPIVendorContact
-
The primary email address used to contact the vendor
- getVendorName() - Method in class org.brapi.v2.model.geno.BrAPIVendorContact
-
The human readable name of the vendor
- getVendorPhone() - Method in class org.brapi.v2.model.geno.BrAPIVendorContact
-
The primary phone number used to contact the vendor
- getVendorURL() - Method in class org.brapi.v2.model.geno.BrAPIVendorContact
-
The primary URL for the vendor
- getVersion() - Method in class org.brapi.v2.model.BrAPIDataLink
-
MIAPPE V1.1 (DM-39) Data file version - The version of the dataset (the actual data).
- getVersion() - Method in class org.brapi.v2.model.BrAPIOntologyReference
-
Ontology version (no specific format)
- getVersion() - Method in class org.brapi.v2.model.core.BrAPIStudyLastUpdate
-
Get version
- getVersion() - Method in class org.brapi.v2.model.pheno.BrAPIOntology
-
Ontology version (no specific format)
- getVersions() - Method in class org.brapi.v2.model.core.BrAPIService
-
- getVolume() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
Get volume
- getVolume() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
Get volume
- getWell() - Method in class org.brapi.v2.model.geno.BrAPISample
-
The Well identifier for this samples location in the plate.
- getWell() - Method in class org.brapi.v2.model.geno.BrAPIVendorSample
-
The Well identifier for this samples location in the plate.
- getWell() - Method in class org.brapi.v2.model.geno.request.BrAPISampleNewRequest
-
The Well identifier for this `Sample` location in the `Plate`.
- getWell() - Method in class org.brapi.v2.model.geno.request.BrAPIVendorOrderSubmissionRequestSamples
-
The Well identifier for this samples location in the plate.
- getYear() - Method in class org.brapi.v2.model.core.BrAPISeason
-
The 4 digit year of the season.
- growthFacility(BrAPIStudyGrowthFacility) - Method in class org.brapi.v2.model.core.BrAPIStudy
-
- growthStage(String) - Method in class org.brapi.v2.model.germ.BrAPIGermplasmAttribute
-
- growthStage(String) - Method in class org.brapi.v2.model.pheno.BrAPIObservationVariable
-