org.brapi.v2.model.geno

Class BrAPIVariantSetMetadataFields

java.lang.Object

org.brapi.v2.model.geno.BrAPIVariantSetMetadataFields

public class BrAPIVariantSetMetadataFields
extends Object

This represents a type of genotyping data or metadata available in this VariantSet

Constructor Summary

Constructors

Constructor and Description
BrAPIVariantSetMetadataFields()

Method Summary

Modifier and Type	Method and Description
BrAPIVariantSetMetadataFields	dataType(BrAPIDataTypeEnum dataType)
boolean	equals(Object o)
BrAPIVariantSetMetadataFields	fieldAbbreviation(String fieldAbbreviation)
BrAPIVariantSetMetadataFields	fieldName(String fieldName)
BrAPIDataTypeEnum	getDataType() The type of field represented in this Genotype Field.
String	getFieldAbbreviation() The abbreviated code of the field represented in this Genotype Field.
String	getFieldName() The name of the field represented in this Genotype Field.
int	hashCode()
void	setDataType(BrAPIDataTypeEnum dataType)
void	setFieldAbbreviation(String fieldAbbreviation)
void	setFieldName(String fieldName)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

BrAPIVariantSetMetadataFields

public BrAPIVariantSetMetadataFields()

Method Detail

dataType

public BrAPIVariantSetMetadataFields dataType(BrAPIDataTypeEnum dataType)

getDataType

public BrAPIDataTypeEnum getDataType()

The type of field represented in this Genotype Field. This is intended to help parse the data out of JSON.

Returns:

dataType

setDataType

public void setDataType(BrAPIDataTypeEnum dataType)

fieldAbbreviation

public BrAPIVariantSetMetadataFields fieldAbbreviation(String fieldAbbreviation)

getFieldAbbreviation

public String getFieldAbbreviation()

The abbreviated code of the field represented in this Genotype Field. These codes should match the VCF standard when possible. Examples include: \"GQ\", \"RD\", and \"HQ\"

Returns:

fieldAbbreviation

setFieldAbbreviation

public void setFieldAbbreviation(String fieldAbbreviation)

fieldName

public BrAPIVariantSetMetadataFields fieldName(String fieldName)

getFieldName

public String getFieldName()

The name of the field represented in this Genotype Field. Examples include: \"Genotype Quality\", \"Read Depth\", and \"Haplotype Quality\"

Returns:

fieldName

setFieldName

public void setFieldName(String fieldName)

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object