org.brapi.v2.model.geno

Class BrAPIVendorSample

java.lang.Object

org.brapi.v2.model.geno.BrAPIVendorSample

public class BrAPIVendorSample
extends Object

VendorSample

Constructor Summary

Constructors

Constructor and Description
BrAPIVendorSample()

Method Summary

Modifier and Type	Method and Description
BrAPIVendorSample	clientSampleBarCode(String clientSampleBarCode)
BrAPIVendorSample	clientSampleId(String clientSampleId)
BrAPIVendorSample	column(Integer column)
BrAPIVendorSample	comments(String comments)
BrAPIVendorSample	concentration(BrAPIMeasurement concentration)
boolean	equals(Object o)
String	getClientSampleBarCode() (Optional) The value of the bar code attached to this sample
String	getClientSampleId() The ID which uniquely identifies this sample to the client making the request
Integer	getColumn() The Column identifier for this samples location in the plate minimum: 1 maximum: 12
String	getComments() Generic comments about this sample for the vendor
@Valid BrAPIMeasurement	getConcentration() Get concentration
String	getOrganismName() Scientific organism name
String	getRow() The Row identifier for this samples location in the plate
String	getSpeciesName() Scientific species name
@Valid BrAPIOntologyReference	getTaxonomyOntologyReference() Get taxonomyOntologyReference
String	getTissueType() The type of tissue in this sample.
@Valid BrAPIOntologyReference	getTissueTypeOntologyReference() Get tissueTypeOntologyReference
@Valid BrAPIMeasurement	getVolume() Get volume
String	getWell() The Well identifier for this samples location in the plate.
int	hashCode()
BrAPIVendorSample	organismName(String organismName)
BrAPIVendorSample	row(String row)
void	setClientSampleBarCode(String clientSampleBarCode)
void	setClientSampleId(String clientSampleId)
void	setColumn(Integer column)
void	setComments(String comments)
void	setConcentration(BrAPIMeasurement concentration)
void	setOrganismName(String organismName)
void	setRow(String row)
void	setSpeciesName(String speciesName)
void	setTaxonomyOntologyReference(BrAPIOntologyReference taxonomyOntologyReference)
void	setTissueType(String tissueType)
void	setTissueTypeOntologyReference(BrAPIOntologyReference tissueTypeOntologyReference)
void	setVolume(BrAPIMeasurement volume)
void	setWell(String well)
BrAPIVendorSample	speciesName(String speciesName)
BrAPIVendorSample	taxonomyOntologyReference(BrAPIOntologyReference taxonomyOntologyReference)
BrAPIVendorSample	tissueType(String tissueType)
BrAPIVendorSample	tissueTypeOntologyReference(BrAPIOntologyReference tissueTypeOntologyReference)
String	toString()
BrAPIVendorSample	volume(BrAPIMeasurement volume)
BrAPIVendorSample	well(String well)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

BrAPIVendorSample

public BrAPIVendorSample()

Method Detail

clientSampleBarCode

public BrAPIVendorSample clientSampleBarCode(String clientSampleBarCode)

getClientSampleBarCode

public String getClientSampleBarCode()

(Optional) The value of the bar code attached to this sample

Returns:

clientSampleBarCode

setClientSampleBarCode

public void setClientSampleBarCode(String clientSampleBarCode)

clientSampleId

public BrAPIVendorSample clientSampleId(String clientSampleId)

getClientSampleId

public String getClientSampleId()

The ID which uniquely identifies this sample to the client making the request

Returns:

clientSampleId

setClientSampleId

public void setClientSampleId(String clientSampleId)

column

public BrAPIVendorSample column(Integer column)

getColumn

public Integer getColumn()

The Column identifier for this samples location in the plate minimum: 1 maximum: 12

Returns:

column

setColumn

public void setColumn(Integer column)

comments

public BrAPIVendorSample comments(String comments)

getComments

public String getComments()

Generic comments about this sample for the vendor

Returns:

comments

setComments

public void setComments(String comments)

concentration

public BrAPIVendorSample concentration(BrAPIMeasurement concentration)

getConcentration

@Valid
public @Valid BrAPIMeasurement getConcentration()

Get concentration

Returns:

concentration

setConcentration

public void setConcentration(BrAPIMeasurement concentration)

organismName

public BrAPIVendorSample organismName(String organismName)

getOrganismName

public String getOrganismName()

Scientific organism name

Returns:

organismName

setOrganismName

public void setOrganismName(String organismName)

row

public BrAPIVendorSample row(String row)

getRow

public String getRow()

The Row identifier for this samples location in the plate

Returns:

row

setRow

public void setRow(String row)

speciesName

public BrAPIVendorSample speciesName(String speciesName)

getSpeciesName

public String getSpeciesName()

Scientific species name

Returns:

speciesName

setSpeciesName

public void setSpeciesName(String speciesName)

taxonomyOntologyReference

public BrAPIVendorSample taxonomyOntologyReference(BrAPIOntologyReference taxonomyOntologyReference)

getTaxonomyOntologyReference

@Valid
public @Valid BrAPIOntologyReference getTaxonomyOntologyReference()

Get taxonomyOntologyReference

Returns:

taxonomyOntologyReference

setTaxonomyOntologyReference

public void setTaxonomyOntologyReference(BrAPIOntologyReference taxonomyOntologyReference)

tissueType

public BrAPIVendorSample tissueType(String tissueType)

getTissueType

public String getTissueType()

The type of tissue in this sample. List of accepted tissue types can be found in the Vendor Specs.

Returns:

tissueType

setTissueType

public void setTissueType(String tissueType)

tissueTypeOntologyReference

public BrAPIVendorSample tissueTypeOntologyReference(BrAPIOntologyReference tissueTypeOntologyReference)

getTissueTypeOntologyReference

@Valid
public @Valid BrAPIOntologyReference getTissueTypeOntologyReference()

Get tissueTypeOntologyReference

Returns:

tissueTypeOntologyReference

setTissueTypeOntologyReference

public void setTissueTypeOntologyReference(BrAPIOntologyReference tissueTypeOntologyReference)

volume

public BrAPIVendorSample volume(BrAPIMeasurement volume)

getVolume

@Valid
public @Valid BrAPIMeasurement getVolume()

Get volume

Returns:

volume

setVolume

public void setVolume(BrAPIMeasurement volume)

well

public BrAPIVendorSample well(String well)

getWell

public String getWell()

The Well identifier for this samples location in the plate. Usually a concatenation of Row and Column, or just a number if the samples are not part of an ordered plate.

Returns:

well

setWell

public void setWell(String well)

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object