Package org.brapi.v2.model.geno

Class Summary

Class	Description
BrAPIAlleleMatrix	AlleleMatrix
BrAPIAlleleMatrixDataMatrices	This is a single data matrix.
BrAPIAlleleMatrixPagination	AlleleMatrixPagination
BrAPIAnalysis	An analysis contains an interpretation of one or several experiments.
BrAPIAvailableFormat	Each 'availableFormat' object is a pairing of dataFormat and fileFormat.
BrAPICall	A `Call` represents the determination of genotype with respect to a particular `Variant`.
BrAPICallGenotypeMetadata	CallGenotypeMetadata
BrAPICallSet	A CallSet is a collection of calls that were generated by the same analysis of the same sample.
BrAPIGenomeMap	GenomeMap
BrAPILinkageGroup	a Linkage Group is the BrAPI generic term for a named section of a map.
BrAPIListValue	`ListValue` is a wrapper around a repeated field of values.
BrAPIMarkerPosition	MarkerPosition
BrAPIMeasurement	A value with units
BrAPIOntologyTerm	An ontology term describing an attribute.
BrAPIPlate	Plate
BrAPIReference	A `Reference` is a canonical assembled contig, intended to act as a reference coordinate space for other genomic annotations.
BrAPIReferenceBases	A string representation of the reference base alleles.
BrAPIReferenceSet	A `ReferenceSet` is a set of `Reference` s which typically comprise a reference assembly, such as `GRCH_38`.
BrAPIReferenceSetSourceGermplasm	ReferenceSetSourceGermplasm
BrAPIReferenceSourceGermplasm	ReferenceSourceGermplasm
BrAPISample	Sample
BrAPISampleTypeEnum.Adapter
BrAPIShipmentForm	ShipmentForm
BrAPIVariant	A `Variant` represents a change in DNA sequence relative to some reference.
BrAPIVariantSet	A VariantSet is a collection of variants and variant calls intended to be analyzed together.
BrAPIVariantSetAvailableFormats	Each 'availableFormat' object is a pairing of dataFormat and fileFormat.
BrAPIVariantSetMetadataFields	This represents a type of genotyping data or metadata available in this VariantSet
BrAPIVendorContact	VendorContact
BrAPIVendorOrder	The details of a vendor order
BrAPIVendorOrderSubmission	Response to an order request
BrAPIVendorPlate	VendorPlate
BrAPIVendorPlateSubmission	Response of a plate submission
BrAPIVendorPlateSubmissionId	Response to an order request
BrAPIVendorPlateSubmissionPlates	VendorPlateSubmissionPlates
BrAPIVendorResultFile	VendorResultFile
BrAPIVendorSample	VendorSample
BrAPIVendorSpecification	VendorSpecification
BrAPIVendorSpecificationService	VendorSpecificationService
BrAPIVendorSpecificationServiceSpecificRequirements	VendorSpecificationServiceSpecificRequirements

Enum Summary

Enum	Description
BrAPIDataTypeEnum	The type of field represented in this data matrix.
BrAPIDimensionEnum	The dimension of the matrix being paginated
BrAPIFileFormatEnum	fileFormat defines the MIME type of the file (ie text/csv, application/excel, application/zip).
BrAPIGenoFileDataFormatEnum
BrAPIPlateFormat	Enum for plate formats, usually \"PLATE_96\" for a 96 well plate or \"TUBES\" for plateless format
BrAPISampleTypeEnum	The type of samples taken.
BrAPIVendorServicePlatformMarkerTypeEnum