| Package | Description |
|---|---|
| org.brapi.v2.model.geno | |
| org.brapi.v2.model.geno.request | |
| org.brapi.v2.model.geno.response |
| Class and Description |
|---|
| BrAPIAlleleMatrix
AlleleMatrix
|
| BrAPIAlleleMatrixDataMatrices
This is a single data matrix.
|
| BrAPIAlleleMatrixPagination
AlleleMatrixPagination
|
| BrAPIAnalysis
An analysis contains an interpretation of one or several experiments.
|
| BrAPIAvailableFormat
Each 'availableFormat' object is a pairing of dataFormat and fileFormat.
|
| BrAPICall
A `Call` represents the determination of genotype with respect to a particular `Variant`.
|
| BrAPICallGenotypeMetadata
CallGenotypeMetadata
|
| BrAPICallSet
A CallSet is a collection of calls that were generated by the same analysis of the same sample.
|
| BrAPIDataTypeEnum
The type of field represented in this data matrix.
|
| BrAPIDimensionEnum
The dimension of the matrix being paginated
|
| BrAPIFileFormatEnum
fileFormat defines the MIME type of the file (ie text/csv, application/excel, application/zip).
|
| BrAPIGenoFileDataFormatEnum |
| BrAPIGenomeMap
GenomeMap
|
| BrAPILinkageGroup
a Linkage Group is the BrAPI generic term for a named section of a map.
|
| BrAPIListValue
`ListValue` is a wrapper around a repeated field of values.
|
| BrAPIMarkerPosition
MarkerPosition
|
| BrAPIMeasurement
A value with units
|
| BrAPIOntologyTerm
An ontology term describing an attribute.
|
| BrAPIPlate
Plate
|
| BrAPIPlateFormat
Enum for plate formats, usually \"PLATE_96\" for a 96 well plate or \"TUBES\" for plateless format
|
| BrAPIReference
A `Reference` is a canonical assembled contig, intended to act as a
reference coordinate space for other genomic annotations.
|
| BrAPIReferenceBases
A string representation of the reference base alleles.
|
| BrAPIReferenceSet
A `ReferenceSet` is a set of `Reference` s which typically comprise a reference assembly, such as `GRCH_38`.
|
| BrAPIReferenceSetSourceGermplasm
ReferenceSetSourceGermplasm
|
| BrAPIReferenceSourceGermplasm
ReferenceSourceGermplasm
|
| BrAPISample
Sample
|
| BrAPISampleTypeEnum
The type of samples taken.
|
| BrAPIShipmentForm
ShipmentForm
|
| BrAPIVariant
A `Variant` represents a change in DNA sequence relative to some
reference.
|
| BrAPIVariantSet
A VariantSet is a collection of variants and variant calls intended to be analyzed together.
|
| BrAPIVariantSetAvailableFormats
Each 'availableFormat' object is a pairing of dataFormat and fileFormat.
|
| BrAPIVariantSetMetadataFields
This represents a type of genotyping data or metadata available in this VariantSet
|
| BrAPIVendorContact
VendorContact
|
| BrAPIVendorOrder
The details of a vendor order
|
| BrAPIVendorOrderSubmission
Response to an order request
|
| BrAPIVendorPlate
VendorPlate
|
| BrAPIVendorPlateSubmission
Response of a plate submission
|
| BrAPIVendorPlateSubmissionId
Response to an order request
|
| BrAPIVendorPlateSubmissionPlates
VendorPlateSubmissionPlates
|
| BrAPIVendorResultFile
VendorResultFile
|
| BrAPIVendorSample
VendorSample
|
| BrAPIVendorServicePlatformMarkerTypeEnum |
| BrAPIVendorSpecification
VendorSpecification
|
| BrAPIVendorSpecificationService
VendorSpecificationService
|
| BrAPIVendorSpecificationServiceSpecificRequirements
VendorSpecificationServiceSpecificRequirements
|
| Class and Description |
|---|
| BrAPIDimensionEnum
The dimension of the matrix being paginated
|
| BrAPIMeasurement
A value with units
|
| BrAPIPlateFormat
Enum for plate formats, usually \"PLATE_96\" for a 96 well plate or \"TUBES\" for plateless format
|
| BrAPISampleTypeEnum
The type of samples taken.
|
| BrAPIVendorPlate
VendorPlate
|
| Class and Description |
|---|
| BrAPIAlleleMatrix
AlleleMatrix
|
| BrAPICall
A `Call` represents the determination of genotype with respect to a particular `Variant`.
|
| BrAPICallSet
A CallSet is a collection of calls that were generated by the same analysis of the same sample.
|
| BrAPIGenomeMap
GenomeMap
|
| BrAPILinkageGroup
a Linkage Group is the BrAPI generic term for a named section of a map.
|
| BrAPIMarkerPosition
MarkerPosition
|
| BrAPIPlate
Plate
|
| BrAPIReference
A `Reference` is a canonical assembled contig, intended to act as a
reference coordinate space for other genomic annotations.
|
| BrAPIReferenceBases
A string representation of the reference base alleles.
|
| BrAPIReferenceSet
A `ReferenceSet` is a set of `Reference` s which typically comprise a reference assembly, such as `GRCH_38`.
|
| BrAPISample
Sample
|
| BrAPIVariant
A `Variant` represents a change in DNA sequence relative to some
reference.
|
| BrAPIVariantSet
A VariantSet is a collection of variants and variant calls intended to be analyzed together.
|
| BrAPIVendorOrder
The details of a vendor order
|
| BrAPIVendorOrderSubmission
Response to an order request
|
| BrAPIVendorPlate
VendorPlate
|
| BrAPIVendorPlateSubmission
Response of a plate submission
|
| BrAPIVendorPlateSubmissionId
Response to an order request
|
| BrAPIVendorResultFile
VendorResultFile
|
| BrAPIVendorSpecification
VendorSpecification
|
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