Uses of Package
org.brapi.v2.model.geno

Packages that use org.brapi.v2.model.geno

Package	Description
org.brapi.v2.model.geno
org.brapi.v2.model.geno.request
org.brapi.v2.model.geno.response

Classes in org.brapi.v2.model.geno used by org.brapi.v2.model.geno

Class and Description
BrAPIAlleleMatrix AlleleMatrix
BrAPIAlleleMatrixDataMatrices This is a single data matrix.
BrAPIAlleleMatrixPagination AlleleMatrixPagination
BrAPIAnalysis An analysis contains an interpretation of one or several experiments.
BrAPIAvailableFormat Each 'availableFormat' object is a pairing of dataFormat and fileFormat.
BrAPICall A `Call` represents the determination of genotype with respect to a particular `Variant`.
BrAPICallGenotypeMetadata CallGenotypeMetadata
BrAPICallSet A CallSet is a collection of calls that were generated by the same analysis of the same sample.
BrAPIDataTypeEnum The type of field represented in this data matrix.
BrAPIDimensionEnum The dimension of the matrix being paginated
BrAPIFileFormatEnum fileFormat defines the MIME type of the file (ie text/csv, application/excel, application/zip).
BrAPIGenoFileDataFormatEnum
BrAPIGenomeMap GenomeMap
BrAPILinkageGroup a Linkage Group is the BrAPI generic term for a named section of a map.
BrAPIListValue `ListValue` is a wrapper around a repeated field of values.
BrAPIMarkerPosition MarkerPosition
BrAPIMeasurement A value with units
BrAPIOntologyTerm An ontology term describing an attribute.
BrAPIPlate Plate
BrAPIPlateFormat Enum for plate formats, usually \"PLATE_96\" for a 96 well plate or \"TUBES\" for plateless format
BrAPIReference A `Reference` is a canonical assembled contig, intended to act as a reference coordinate space for other genomic annotations.
BrAPIReferenceBases A string representation of the reference base alleles.
BrAPIReferenceSet A `ReferenceSet` is a set of `Reference` s which typically comprise a reference assembly, such as `GRCH_38`.
BrAPIReferenceSetSourceGermplasm ReferenceSetSourceGermplasm
BrAPIReferenceSourceGermplasm ReferenceSourceGermplasm
BrAPISample Sample
BrAPISampleTypeEnum The type of samples taken.
BrAPIShipmentForm ShipmentForm
BrAPIVariant A `Variant` represents a change in DNA sequence relative to some reference.
BrAPIVariantSet A VariantSet is a collection of variants and variant calls intended to be analyzed together.
BrAPIVariantSetAvailableFormats Each 'availableFormat' object is a pairing of dataFormat and fileFormat.
BrAPIVariantSetMetadataFields This represents a type of genotyping data or metadata available in this VariantSet
BrAPIVendorContact VendorContact
BrAPIVendorOrder The details of a vendor order
BrAPIVendorOrderSubmission Response to an order request
BrAPIVendorPlate VendorPlate
BrAPIVendorPlateSubmission Response of a plate submission
BrAPIVendorPlateSubmissionId Response to an order request
BrAPIVendorPlateSubmissionPlates VendorPlateSubmissionPlates
BrAPIVendorResultFile VendorResultFile
BrAPIVendorSample VendorSample
BrAPIVendorServicePlatformMarkerTypeEnum
BrAPIVendorSpecification VendorSpecification
BrAPIVendorSpecificationService VendorSpecificationService
BrAPIVendorSpecificationServiceSpecificRequirements VendorSpecificationServiceSpecificRequirements

Classes in org.brapi.v2.model.geno used by org.brapi.v2.model.geno.request

Class and Description
BrAPIDimensionEnum The dimension of the matrix being paginated
BrAPIMeasurement A value with units
BrAPIPlateFormat Enum for plate formats, usually \"PLATE_96\" for a 96 well plate or \"TUBES\" for plateless format
BrAPISampleTypeEnum The type of samples taken.
BrAPIVendorPlate VendorPlate

Classes in org.brapi.v2.model.geno used by org.brapi.v2.model.geno.response

Class and Description
BrAPIAlleleMatrix AlleleMatrix
BrAPICall A `Call` represents the determination of genotype with respect to a particular `Variant`.
BrAPICallSet A CallSet is a collection of calls that were generated by the same analysis of the same sample.
BrAPIGenomeMap GenomeMap
BrAPILinkageGroup a Linkage Group is the BrAPI generic term for a named section of a map.
BrAPIMarkerPosition MarkerPosition
BrAPIPlate Plate
BrAPIReference A `Reference` is a canonical assembled contig, intended to act as a reference coordinate space for other genomic annotations.
BrAPIReferenceBases A string representation of the reference base alleles.
BrAPIReferenceSet A `ReferenceSet` is a set of `Reference` s which typically comprise a reference assembly, such as `GRCH_38`.
BrAPISample Sample
BrAPIVariant A `Variant` represents a change in DNA sequence relative to some reference.
BrAPIVariantSet A VariantSet is a collection of variants and variant calls intended to be analyzed together.
BrAPIVendorOrder The details of a vendor order
BrAPIVendorOrderSubmission Response to an order request
BrAPIVendorPlate VendorPlate
BrAPIVendorPlateSubmission Response of a plate submission
BrAPIVendorPlateSubmissionId Response to an order request
BrAPIVendorResultFile VendorResultFile
BrAPIVendorSpecification VendorSpecification