org.brapi.v2.model.geno.request

Class BrAPIVariantSetsExtractRequest

java.lang.Object

org.brapi.v2.model.geno.request.BrAPIVariantSetsExtractRequest

public class BrAPIVariantSetsExtractRequest
extends Object

VariantSetsExtractRequest

Constructor Summary

Constructors

Constructor and Description
BrAPIVariantSetsExtractRequest()

Method Summary

Modifier and Type	Method and Description
BrAPIVariantSetsExtractRequest	addCallSetDbIdsItem(String callSetDbIdsItem)
BrAPIVariantSetsExtractRequest	addStudyDbIdsItem(String studyDbIdsItem)
BrAPIVariantSetsExtractRequest	addStudyNamesItem(String studyNamesItem)
BrAPIVariantSetsExtractRequest	addVariantDbIdsItem(String variantDbIdsItem)
BrAPIVariantSetsExtractRequest	addVariantSetDbIdsItem(String variantSetDbIdsItem)
BrAPIVariantSetsExtractRequest	callSetDbIds(List<String> callSetDbIds)
boolean	equals(Object o)
BrAPIVariantSetsExtractRequest	expandHomozygotes(Boolean expandHomozygotes)
List<String>	getCallSetDbIds() The CallSet to search.
String	getSepPhased() The string used as a separator for phased allele calls.
String	getSepUnphased() The string used as a separator for unphased allele calls.
List<String>	getStudyDbIds() List of study identifiers to search for
List<String>	getStudyNames() List of study names to filter search results
String	getUnknownString() The string used as a representation for missing data.
List<String>	getVariantDbIds() The Variant to search.
List<String>	getVariantSetDbIds() The VariantSet to search.
int	hashCode()
Boolean	isExpandHomozygotes() Should homozygotes be expanded (true) or collapsed into a single occurence (false)
BrAPIVariantSetsExtractRequest	sepPhased(String sepPhased)
BrAPIVariantSetsExtractRequest	sepUnphased(String sepUnphased)
void	setCallSetDbIds(List<String> callSetDbIds)
void	setExpandHomozygotes(Boolean expandHomozygotes)
void	setSepPhased(String sepPhased)
void	setSepUnphased(String sepUnphased)
void	setStudyDbIds(List<String> studyDbIds)
void	setStudyNames(List<String> studyNames)
void	setUnknownString(String unknownString)
void	setVariantDbIds(List<String> variantDbIds)
void	setVariantSetDbIds(List<String> variantSetDbIds)
BrAPIVariantSetsExtractRequest	studyDbIds(List<String> studyDbIds)
BrAPIVariantSetsExtractRequest	studyNames(List<String> studyNames)
String	toString()
BrAPIVariantSetsExtractRequest	unknownString(String unknownString)
BrAPIVariantSetsExtractRequest	variantDbIds(List<String> variantDbIds)
BrAPIVariantSetsExtractRequest	variantSetDbIds(List<String> variantSetDbIds)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

BrAPIVariantSetsExtractRequest

public BrAPIVariantSetsExtractRequest()

Method Detail

callSetDbIds

public BrAPIVariantSetsExtractRequest callSetDbIds(List<String> callSetDbIds)

addCallSetDbIdsItem

public BrAPIVariantSetsExtractRequest addCallSetDbIdsItem(String callSetDbIdsItem)

getCallSetDbIds

public List<String> getCallSetDbIds()

The CallSet to search.

Returns:

callSetDbIds

setCallSetDbIds

public void setCallSetDbIds(List<String> callSetDbIds)

expandHomozygotes

public BrAPIVariantSetsExtractRequest expandHomozygotes(Boolean expandHomozygotes)

isExpandHomozygotes

public Boolean isExpandHomozygotes()

Should homozygotes be expanded (true) or collapsed into a single occurence (false)

Returns:

expandHomozygotes

setExpandHomozygotes

public void setExpandHomozygotes(Boolean expandHomozygotes)

sepPhased

public BrAPIVariantSetsExtractRequest sepPhased(String sepPhased)

getSepPhased

public String getSepPhased()

The string used as a separator for phased allele calls.

Returns:

sepPhased

setSepPhased

public void setSepPhased(String sepPhased)

sepUnphased

public BrAPIVariantSetsExtractRequest sepUnphased(String sepUnphased)

getSepUnphased

public String getSepUnphased()

The string used as a separator for unphased allele calls.

Returns:

sepUnphased

setSepUnphased

public void setSepUnphased(String sepUnphased)

studyDbIds

public BrAPIVariantSetsExtractRequest studyDbIds(List<String> studyDbIds)

addStudyDbIdsItem

public BrAPIVariantSetsExtractRequest addStudyDbIdsItem(String studyDbIdsItem)

getStudyDbIds

public List<String> getStudyDbIds()

List of study identifiers to search for

Returns:

studyDbIds

setStudyDbIds

public void setStudyDbIds(List<String> studyDbIds)

studyNames

public BrAPIVariantSetsExtractRequest studyNames(List<String> studyNames)

addStudyNamesItem

public BrAPIVariantSetsExtractRequest addStudyNamesItem(String studyNamesItem)

getStudyNames

public List<String> getStudyNames()

List of study names to filter search results

Returns:

studyNames

setStudyNames

public void setStudyNames(List<String> studyNames)

unknownString

public BrAPIVariantSetsExtractRequest unknownString(String unknownString)

getUnknownString

public String getUnknownString()

The string used as a representation for missing data.

Returns:

unknownString

setUnknownString

public void setUnknownString(String unknownString)

variantDbIds

public BrAPIVariantSetsExtractRequest variantDbIds(List<String> variantDbIds)

addVariantDbIdsItem

public BrAPIVariantSetsExtractRequest addVariantDbIdsItem(String variantDbIdsItem)

getVariantDbIds

public List<String> getVariantDbIds()

The Variant to search.

Returns:

variantDbIds

setVariantDbIds

public void setVariantDbIds(List<String> variantDbIds)

variantSetDbIds

public BrAPIVariantSetsExtractRequest variantSetDbIds(List<String> variantSetDbIds)

addVariantSetDbIdsItem

public BrAPIVariantSetsExtractRequest addVariantSetDbIdsItem(String variantSetDbIdsItem)

getVariantSetDbIds

public List<String> getVariantSetDbIds()

The VariantSet to search.

Returns:

variantSetDbIds

setVariantSetDbIds

public void setVariantSetDbIds(List<String> variantSetDbIds)

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object