org.brapi.v2.model.pheno

Class BrAPIObservationUnit

java.lang.Object

org.brapi.v2.model.pheno.BrAPIObservationUnit

public class BrAPIObservationUnit
extends Object

ObservationUnit

Constructor Summary

Constructors

Constructor and Description
BrAPIObservationUnit()

Method Summary

Modifier and Type	Method and Description
BrAPIObservationUnit	additionalInfo(com.google.gson.JsonObject additionalInfo)
BrAPIObservationUnit	addObservationsItem(BrAPIObservation observationsItem)
BrAPIObservationUnit	addTreatmentsItem(BrAPIObservationTreatment treatmentsItem)
BrAPIObservationUnit	crossDbId(String crossDbId)
BrAPIObservationUnit	crossName(String crossName)
boolean	equals(Object o)
BrAPIObservationUnit	externalReferences(List<BrAPIExternalReference> externalReferences)
BrAPIObservationUnit	germplasmDbId(String germplasmDbId)
BrAPIObservationUnit	germplasmName(String germplasmName)
com.google.gson.JsonObject	getAdditionalInfo() Additional arbitrary info
String	getCrossDbId() The unique identifier for the originating Seed Lot
String	getCrossName() The unique identifier for the originating Seed Lot
List<BrAPIExternalReference>	getExternalReferences() Get externalReferences
String	getGermplasmDbId() The ID which uniquely identifies a germplasm
String	getGermplasmName() Name of the germplasm.
String	getLocationDbId() The ID which uniquely identifies a location, associated with this study
String	getLocationName() The human readable name of a location associated with this study
List<BrAPIObservation>	getObservations() All observations attached to this observation unit.
String	getObservationUnitDbId() The ID which uniquely identifies an observation unit MIAPPE V1.1 (DM-70) Observation unit ID - Identifier used to identify the observation unit in data files containing the values observed or measured on that unit.
String	getObservationUnitName() A human readable name for an observation unit
BrAPIObservationUnitPosition	getObservationUnitPosition() Get observationUnitPosition
String	getObservationUnitPUI() A Permanent Unique Identifier for an observation unit MIAPPE V1.1 (DM-72) External ID - Identifier for the observation unit in a persistent repository, comprises the name of the repository and the identifier of the observation unit therein.
String	getProgramDbId() The ID which uniquely identifies a program
String	getProgramName() The human readable name of a program
String	getSeedLotDbId() The unique identifier for the originating Seed Lot
String	getSeedLotName() The unique identifier for the originating Seed Lot
String	getStudyDbId() The ID which uniquely identifies a study within the given database server
String	getStudyName() The human readable name for a study
List<BrAPIObservationTreatment>	getTreatments() List of treatments applied to an observation unit.
String	getTrialDbId() The ID which uniquely identifies a trial
String	getTrialName() The human readable name of a trial
int	hashCode()
BrAPIObservationUnit	locationDbId(String locationDbId)
BrAPIObservationUnit	locationName(String locationName)
BrAPIObservationUnit	observations(List<BrAPIObservation> observations)
BrAPIObservationUnit	observationUnitDbId(String observationUnitDbId)
BrAPIObservationUnit	observationUnitName(String observationUnitName)
BrAPIObservationUnit	observationUnitPosition(BrAPIObservationUnitPosition observationUnitPosition)
BrAPIObservationUnit	observationUnitPUI(String observationUnitPUI)
BrAPIObservationUnit	programDbId(String programDbId)
BrAPIObservationUnit	programName(String programName)
BrAPIObservationUnit	putAdditionalInfoItem(String key, Object additionalInfoItem)
BrAPIObservationUnit	seedLotDbId(String seedLotDbId)
BrAPIObservationUnit	seedLotName(String seedLotName)
void	setAdditionalInfo(com.google.gson.JsonObject additionalInfo)
void	setCrossDbId(String crossDbId)
void	setCrossName(String crossName)
void	setExternalReferences(List<BrAPIExternalReference> externalReferences)
void	setGermplasmDbId(String germplasmDbId)
void	setGermplasmName(String germplasmName)
void	setLocationDbId(String locationDbId)
void	setLocationName(String locationName)
void	setObservations(List<BrAPIObservation> observations)
void	setObservationUnitDbId(String observationUnitDbId)
void	setObservationUnitName(String observationUnitName)
void	setObservationUnitPosition(BrAPIObservationUnitPosition observationUnitPosition)
void	setObservationUnitPUI(String observationUnitPUI)
void	setProgramDbId(String programDbId)
void	setProgramName(String programName)
void	setSeedLotDbId(String seedLotDbId)
void	setSeedLotName(String seedLotName)
void	setStudyDbId(String studyDbId)
void	setStudyName(String studyName)
void	setTreatments(List<BrAPIObservationTreatment> treatments)
void	setTrialDbId(String trialDbId)
void	setTrialName(String trialName)
BrAPIObservationUnit	studyDbId(String studyDbId)
BrAPIObservationUnit	studyName(String studyName)
String	toString()
BrAPIObservationUnit	treatments(List<BrAPIObservationTreatment> treatments)
BrAPIObservationUnit	trialDbId(String trialDbId)
BrAPIObservationUnit	trialName(String trialName)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

BrAPIObservationUnit

public BrAPIObservationUnit()

Method Detail

observationUnitDbId

public BrAPIObservationUnit observationUnitDbId(String observationUnitDbId)

getObservationUnitDbId

public String getObservationUnitDbId()

The ID which uniquely identifies an observation unit MIAPPE V1.1 (DM-70) Observation unit ID - Identifier used to identify the observation unit in data files containing the values observed or measured on that unit. Must be locally unique.

Returns:

observationUnitDbId

setObservationUnitDbId

public void setObservationUnitDbId(String observationUnitDbId)

observations

public BrAPIObservationUnit observations(List<BrAPIObservation> observations)

addObservationsItem

public BrAPIObservationUnit addObservationsItem(BrAPIObservation observationsItem)

getObservations

public List<BrAPIObservation> getObservations()

All observations attached to this observation unit. Default for this field is null or omitted. Do NOT include data in this field unless the 'includeObservations' flag is explicitly set to True.

Returns:

observations

setObservations

public void setObservations(List<BrAPIObservation> observations)

additionalInfo

public BrAPIObservationUnit additionalInfo(com.google.gson.JsonObject additionalInfo)

putAdditionalInfoItem

public BrAPIObservationUnit putAdditionalInfoItem(String key,
                                                  Object additionalInfoItem)

getAdditionalInfo

public com.google.gson.JsonObject getAdditionalInfo()

Additional arbitrary info

Returns:

additionalInfo

setAdditionalInfo

public void setAdditionalInfo(com.google.gson.JsonObject additionalInfo)

externalReferences

public BrAPIObservationUnit externalReferences(List<BrAPIExternalReference> externalReferences)

getExternalReferences

public List<BrAPIExternalReference> getExternalReferences()

Get externalReferences

Returns:

externalReferences

setExternalReferences

public void setExternalReferences(List<BrAPIExternalReference> externalReferences)

germplasmDbId

public BrAPIObservationUnit germplasmDbId(String germplasmDbId)

getGermplasmDbId

public String getGermplasmDbId()

The ID which uniquely identifies a germplasm

Returns:

germplasmDbId

setGermplasmDbId

public void setGermplasmDbId(String germplasmDbId)

germplasmName

public BrAPIObservationUnit germplasmName(String germplasmName)

getGermplasmName

public String getGermplasmName()

Name of the germplasm. It can be the preferred name and does not have to be unique.

Returns:

germplasmName

setGermplasmName

public void setGermplasmName(String germplasmName)

locationDbId

public BrAPIObservationUnit locationDbId(String locationDbId)

getLocationDbId

public String getLocationDbId()

The ID which uniquely identifies a location, associated with this study

Returns:

locationDbId

setLocationDbId

public void setLocationDbId(String locationDbId)

locationName

public BrAPIObservationUnit locationName(String locationName)

getLocationName

public String getLocationName()

The human readable name of a location associated with this study

Returns:

locationName

setLocationName

public void setLocationName(String locationName)

observationUnitName

public BrAPIObservationUnit observationUnitName(String observationUnitName)

getObservationUnitName

public String getObservationUnitName()

A human readable name for an observation unit

Returns:

observationUnitName

setObservationUnitName

public void setObservationUnitName(String observationUnitName)

observationUnitPUI

public BrAPIObservationUnit observationUnitPUI(String observationUnitPUI)

getObservationUnitPUI

public String getObservationUnitPUI()

A Permanent Unique Identifier for an observation unit MIAPPE V1.1 (DM-72) External ID - Identifier for the observation unit in a persistent repository, comprises the name of the repository and the identifier of the observation unit therein. The EBI Biosamples repository can be used. URI are recommended when possible.

Returns:

observationUnitPUI

setObservationUnitPUI

public void setObservationUnitPUI(String observationUnitPUI)

observationUnitPosition

public BrAPIObservationUnit observationUnitPosition(BrAPIObservationUnitPosition observationUnitPosition)

getObservationUnitPosition

public BrAPIObservationUnitPosition getObservationUnitPosition()

Get observationUnitPosition

Returns:

observationUnitPosition

setObservationUnitPosition

public void setObservationUnitPosition(BrAPIObservationUnitPosition observationUnitPosition)

programDbId

public BrAPIObservationUnit programDbId(String programDbId)

getProgramDbId

public String getProgramDbId()

The ID which uniquely identifies a program

Returns:

programDbId

setProgramDbId

public void setProgramDbId(String programDbId)

programName

public BrAPIObservationUnit programName(String programName)

getProgramName

public String getProgramName()

The human readable name of a program

Returns:

programName

setProgramName

public void setProgramName(String programName)

seedLotDbId

public BrAPIObservationUnit seedLotDbId(String seedLotDbId)

getSeedLotDbId

public String getSeedLotDbId()

The unique identifier for the originating Seed Lot

Returns:

seedLotDbId

setSeedLotDbId

public void setSeedLotDbId(String seedLotDbId)

seedLotName

public BrAPIObservationUnit seedLotName(String seedLotName)

getSeedLotName

public String getSeedLotName()

The unique identifier for the originating Seed Lot

Returns:

seedLotName

setSeedLotName

public void setSeedLotName(String seedLotName)

crossDbId

public BrAPIObservationUnit crossDbId(String crossDbId)

getCrossDbId

public String getCrossDbId()

The unique identifier for the originating Seed Lot

Returns:

crossDbId

setCrossDbId

public void setCrossDbId(String crossDbId)

crossName

public BrAPIObservationUnit crossName(String crossName)

getCrossName

public String getCrossName()

The unique identifier for the originating Seed Lot

Returns:

crossName

setCrossName

public void setCrossName(String crossName)

studyDbId

public BrAPIObservationUnit studyDbId(String studyDbId)

getStudyDbId

public String getStudyDbId()

The ID which uniquely identifies a study within the given database server

Returns:

studyDbId

setStudyDbId

public void setStudyDbId(String studyDbId)

studyName

public BrAPIObservationUnit studyName(String studyName)

getStudyName

public String getStudyName()

The human readable name for a study

Returns:

studyName

setStudyName

public void setStudyName(String studyName)

treatments

public BrAPIObservationUnit treatments(List<BrAPIObservationTreatment> treatments)

addTreatmentsItem

public BrAPIObservationUnit addTreatmentsItem(BrAPIObservationTreatment treatmentsItem)

getTreatments

public List<BrAPIObservationTreatment> getTreatments()

List of treatments applied to an observation unit. MIAPPE V1.1 (DM-74) Observation Unit factor value - List of values for each factor applied to the observation unit.

Returns:

treatments

setTreatments

public void setTreatments(List<BrAPIObservationTreatment> treatments)

trialDbId

public BrAPIObservationUnit trialDbId(String trialDbId)

getTrialDbId

public String getTrialDbId()

The ID which uniquely identifies a trial

Returns:

trialDbId

setTrialDbId

public void setTrialDbId(String trialDbId)

trialName

public BrAPIObservationUnit trialName(String trialName)

getTrialName

public String getTrialName()

The human readable name of a trial

Returns:

trialName

setTrialName

public void setTrialName(String trialName)

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object