org.brapi.v2.model.pheno

Class BrAPITrait

java.lang.Object

org.brapi.v2.model.pheno.BrAPITrait

public class BrAPITrait
extends Object

TraitBaseClass

Constructor Summary

Constructors

Constructor and Description
BrAPITrait()

Method Summary

Modifier and Type	Method and Description
BrAPITrait	addAlternativeAbbreviationsItem(String alternativeAbbreviationsItem)
BrAPITrait	additionalInfo(com.google.gson.JsonObject additionalInfo)
BrAPITrait	addSynonymsItem(String synonymsItem)
BrAPITrait	alternativeAbbreviations(List<String> alternativeAbbreviations)
BrAPITrait	attribute(String attribute)
BrAPITrait	attributePUI(String attributePUI)
BrAPITrait	entity(String entity)
BrAPITrait	entityPUI(String entityPUI)
boolean	equals(Object o)
BrAPITrait	externalReferences(List<BrAPIExternalReference> externalReferences)
com.google.gson.JsonObject	getAdditionalInfo() Additional arbitrary info
List<String>	getAlternativeAbbreviations() Other frequent abbreviations of the trait, if any.
String	getAttribute() A trait can be decomposed as \"Trait\" = \"Entity\" + \"Attribute\", the attribute is the observed feature (or characteristic) of the entity e.g., for \"grain colour\", attribute = \"colour\"
String	getAttributePUI() The Permanent Unique Identifier of a Trait Attribute, usually in the form of a URI <br/>A trait can be decomposed as \"Trait\" = \"Entity\" + \"Attribute\", the attribute is the observed feature (or characteristic) of the entity e.g., for \"grain colour\", attribute = \"colour\"
String	getEntity() A trait can be decomposed as \"Trait\" = \"Entity\" + \"Attribute\", the entity is the part of the plant that the trait refers to e.g., for \"grain colour\", entity = \"grain\"
String	getEntityPUI() The Permanent Unique Identifier of a Trait Entity, usually in the form of a URI <br/>A Trait can be decomposed as \"Trait\" = \"Entity\" + \"Attribute\", the Entity is the part of the plant that the trait refers to e.g., for \"grain colour\", entity = \"grain\"
List<BrAPIExternalReference>	getExternalReferences() Get externalReferences
String	getMainAbbreviation() Main abbreviation for trait name.
BrAPIOntologyReference	getOntologyReference() Get ontologyReference
String	getStatus() Trait status (examples: \"recommended\", \"obsolete\", \"legacy\", etc.)
List<String>	getSynonyms() Other trait names
String	getTraitClass() Trait class.
String	getTraitDbId() The ID which uniquely identifies a trait
String	getTraitDescription() The description of a trait
String	getTraitName() The human readable name of a trait MIAPPE V1.1 (DM-86) Trait - Name of the (plant or environmental) trait under observation
String	getTraitPUI() The Permanent Unique Identifier of a Trait, usually in the form of a URI
int	hashCode()
BrAPITrait	mainAbbreviation(String mainAbbreviation)
BrAPITrait	ontologyReference(BrAPIOntologyReference ontologyReference)
BrAPITrait	putAdditionalInfoItem(String key, Object additionalInfoItem)
void	setAdditionalInfo(com.google.gson.JsonObject additionalInfo)
void	setAlternativeAbbreviations(List<String> alternativeAbbreviations)
void	setAttribute(String attribute)
void	setAttributePUI(String attributePUI)
void	setEntity(String entity)
void	setEntityPUI(String entityPUI)
void	setExternalReferences(List<BrAPIExternalReference> externalReferences)
void	setMainAbbreviation(String mainAbbreviation)
void	setOntologyReference(BrAPIOntologyReference ontologyReference)
void	setStatus(String status)
void	setSynonyms(List<String> synonyms)
void	setTraitClass(String traitClass)
void	setTraitDbId(String traitDbId)
void	setTraitDescription(String traitDescription)
void	setTraitName(String traitName)
void	setTraitPUI(String traitPUI)
BrAPITrait	status(String status)
BrAPITrait	synonyms(List<String> synonyms)
String	toString()
BrAPITrait	traitClass(String traitClass)
BrAPITrait	traitDbId(String traitDbId)
BrAPITrait	traitDescription(String traitDescription)
BrAPITrait	traitName(String traitName)
BrAPITrait	traitPUI(String traitPUI)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

BrAPITrait

public BrAPITrait()

Method Detail

traitDbId

public BrAPITrait traitDbId(String traitDbId)

getTraitDbId

public String getTraitDbId()

The ID which uniquely identifies a trait

Returns:

traitDbId

setTraitDbId

public void setTraitDbId(String traitDbId)

additionalInfo

public BrAPITrait additionalInfo(com.google.gson.JsonObject additionalInfo)

putAdditionalInfoItem

public BrAPITrait putAdditionalInfoItem(String key,
                                        Object additionalInfoItem)

getAdditionalInfo

public com.google.gson.JsonObject getAdditionalInfo()

Additional arbitrary info

Returns:

additionalInfo

setAdditionalInfo

public void setAdditionalInfo(com.google.gson.JsonObject additionalInfo)

alternativeAbbreviations

public BrAPITrait alternativeAbbreviations(List<String> alternativeAbbreviations)

addAlternativeAbbreviationsItem

public BrAPITrait addAlternativeAbbreviationsItem(String alternativeAbbreviationsItem)

getAlternativeAbbreviations

public List<String> getAlternativeAbbreviations()

Other frequent abbreviations of the trait, if any. These abbreviations do not have to follow a convention

Returns:

alternativeAbbreviations

setAlternativeAbbreviations

public void setAlternativeAbbreviations(List<String> alternativeAbbreviations)

attribute

public BrAPITrait attribute(String attribute)

getAttribute

public String getAttribute()

A trait can be decomposed as \"Trait\" = \"Entity\" + \"Attribute\", the attribute is the observed feature (or characteristic) of the entity e.g., for \"grain colour\", attribute = \"colour\"

Returns:

attribute

setAttribute

public void setAttribute(String attribute)

attributePUI

public BrAPITrait attributePUI(String attributePUI)

getAttributePUI

public String getAttributePUI()

The Permanent Unique Identifier of a Trait Attribute, usually in the form of a URI <br/>A trait can be decomposed as \"Trait\" = \"Entity\" + \"Attribute\", the attribute is the observed feature (or characteristic) of the entity e.g., for \"grain colour\", attribute = \"colour\"

Returns:

attributePUI

setAttributePUI

public void setAttributePUI(String attributePUI)

entity

public BrAPITrait entity(String entity)

getEntity

public String getEntity()

A trait can be decomposed as \"Trait\" = \"Entity\" + \"Attribute\", the entity is the part of the plant that the trait refers to e.g., for \"grain colour\", entity = \"grain\"

Returns:

entity

setEntity

public void setEntity(String entity)

entityPUI

public BrAPITrait entityPUI(String entityPUI)

getEntityPUI

public String getEntityPUI()

The Permanent Unique Identifier of a Trait Entity, usually in the form of a URI <br/>A Trait can be decomposed as \"Trait\" = \"Entity\" + \"Attribute\", the Entity is the part of the plant that the trait refers to e.g., for \"grain colour\", entity = \"grain\"

Returns:

entityPUI

setEntityPUI

public void setEntityPUI(String entityPUI)

externalReferences

public BrAPITrait externalReferences(List<BrAPIExternalReference> externalReferences)

getExternalReferences

public List<BrAPIExternalReference> getExternalReferences()

Get externalReferences

Returns:

externalReferences

setExternalReferences

public void setExternalReferences(List<BrAPIExternalReference> externalReferences)

mainAbbreviation

public BrAPITrait mainAbbreviation(String mainAbbreviation)

getMainAbbreviation

public String getMainAbbreviation()

Main abbreviation for trait name. (examples: \"Carotenoid content\" => \"CC\")

Returns:

mainAbbreviation

setMainAbbreviation

public void setMainAbbreviation(String mainAbbreviation)

ontologyReference

public BrAPITrait ontologyReference(BrAPIOntologyReference ontologyReference)

getOntologyReference

public BrAPIOntologyReference getOntologyReference()

Get ontologyReference

Returns:

ontologyReference

setOntologyReference

public void setOntologyReference(BrAPIOntologyReference ontologyReference)

status

public BrAPITrait status(String status)

getStatus

public String getStatus()

Trait status (examples: \"recommended\", \"obsolete\", \"legacy\", etc.)

Returns:

status

setStatus

public void setStatus(String status)

synonyms

public BrAPITrait synonyms(List<String> synonyms)

addSynonymsItem

public BrAPITrait addSynonymsItem(String synonymsItem)

getSynonyms

public List<String> getSynonyms()

Other trait names

Returns:

synonyms

setSynonyms

public void setSynonyms(List<String> synonyms)

traitClass

public BrAPITrait traitClass(String traitClass)

getTraitClass

public String getTraitClass()

Trait class. (examples: \"morphological\", \"phenological\", \"agronomical\", \"physiological\", \"abiotic stress\", \"biotic stress\", \"biochemical\", \"quality traits\", \"fertility\", etc.)

Returns:

traitClass

setTraitClass

public void setTraitClass(String traitClass)

traitDescription

public BrAPITrait traitDescription(String traitDescription)

getTraitDescription

public String getTraitDescription()

The description of a trait

Returns:

traitDescription

setTraitDescription

public void setTraitDescription(String traitDescription)

traitName

public BrAPITrait traitName(String traitName)

getTraitName

public String getTraitName()

The human readable name of a trait MIAPPE V1.1 (DM-86) Trait - Name of the (plant or environmental) trait under observation

Returns:

traitName

setTraitName

public void setTraitName(String traitName)

traitPUI

public BrAPITrait traitPUI(String traitPUI)

getTraitPUI

public String getTraitPUI()

The Permanent Unique Identifier of a Trait, usually in the form of a URI

Returns:

traitPUI

setTraitPUI

public void setTraitPUI(String traitPUI)

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object