Package org.bridgedb.rdb

Driver and helper classes for using relational databases as identifier mapping services.

See: Description

Class Summary

Class	Description
GdbProvider	Utility class that maintains a list of synonym databases and the species they apply to.
IDMapperRdb	Interface for all classes that provide Gdb-like functionality, such as looking up cross-references and backpage text.
SimpleGdb	SimpleGdb is the main implementation of the Gdb interface, for dealing with single SQL-based pgdb's.
SimpleGdbFactory	Factory class that instantiates the correct SimpleGdb implementation for a new / existing gdb, based on the schema version.
SimpleGdbImplCommon	Some methods and constants that are shared between SimpleGdbImpl2 and SimpleGdbImpl3

Package org.bridgedb.rdb Description

Driver and helper classes for using relational databases as identifier mapping services.

For example, to use a downloadable derby database (pgdb file) as a mapping resource, you can use the following piece of code:

        class.forName("org.bridgedb.file.IDMapperRdb");
        mapper = BridgeDb.connect ("idmapper-pgdb:path/to/file.pgdb");