Package org.bridgedb.rdb

Driver and helper classes for using relational databases as identifier mapping services.

For example, to use a downloadable derby database (pgdb file) as a mapping resource, you can use the following piece of code:

        class.forName("org.bridgedb.file.IDMapperRdb");
        mapper = BridgeDb.connect ("idmapper-pgdb:path/to/file.pgdb");

Class Summary

Class	Description
GdbProvider	Utility class that maintains a list of synonym databases and the species they apply to.
IDMapperRdb	Interface for all classes that provide Gdb-like functionality, such as looking up cross-references and backpage text.
SimpleGdb	SimpleGdb is the main implementation of the Gdb interface, for dealing with single SQL-based pgdb's.
SimpleGdbFactory	Factory class that instantiates the correct SimpleGdb implementation for a new / existing gdb, based on the schema version.
SimpleGdbImplCommon	Some methods and constants that are shared between SimpleGdbImpl2 and SimpleGdbImpl3