public class GdbProvider extends Object
species_latin_name[Tab]database_file_locationIf a database applies to all species (e.g. metabolites), use "*" as species.
| Constructor and Description |
|---|
GdbProvider() |
GdbProvider(boolean transitive) |
| Modifier and Type | Method and Description |
|---|---|
void |
addGlobalGdb(IDMapper gdb) |
void |
addOrganismGdb(Organism organism,
IDMapper gdb) |
static GdbProvider |
fromConfigFile(File f) |
static GdbProvider |
fromConfigFile(File f,
boolean transitive) |
List<IDMapper> |
getGdbs(Organism organism)
Deprecated.
use getStack(organism) instead
|
Set<Organism> |
getOrganisms() |
IDMapperStack |
getStack(Organism organism) |
void |
removeGlobalGdb(IDMapper gdb) |
void |
removeOrganismGdb(Organism organism,
IDMapperRdb gdb) |
public GdbProvider()
public GdbProvider(boolean transitive)
public void removeOrganismGdb(Organism organism, IDMapperRdb gdb)
public void addGlobalGdb(IDMapper gdb)
public void removeGlobalGdb(IDMapper gdb)
public IDMapperStack getStack(Organism organism)
public static GdbProvider fromConfigFile(File f) throws IDMapperException, IOException, ClassNotFoundException
public static GdbProvider fromConfigFile(File f, boolean transitive) throws IDMapperException, IOException, ClassNotFoundException
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