2D-PAGE protein	2d-page.protein		http://2dbase.techfak.uni-bielefeld.de/cgi-bin/2d/2d.cgi?ac=$id	P39172	unknown		1	urn:miriam:2d-page.protein	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	
3DMET	3dmet		http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$id	B00162	unknown		1	urn:miriam:3dmet	^B\d{5}$	
ABS	abs		http://genome.crg.es/datasets/abs2005/entries/$id.html	A0014	unknown		1	urn:miriam:abs	^A\d+$	
Aceview Worm	aceview.worm		http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$id	aap-1	unknown		1	urn:miriam:aceview.worm	^[a-z0-9-]+$	
Aclame	aclame		http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=$id	mge:2	unknown		1	urn:miriam:aclame	^mge:\d+$	
AERS	AERS		http://aers.data2semantics.org/resource/drug/$id	ADENINE	unknown		1			
Affy	X	http://www.affymetrix.com/	https://www.affymetrix.com/LinkServlet?probeset=$id	1851_s_at	probe		0	urn:miriam:affy.probeset	\d{4,}((_[asx])?_at)?	Affymetrix Probeset
AFTOL	aftol.taxonomy		http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$id	959	unknown		1	urn:miriam:aftol.taxonomy	^\d+$	
AGD	agd		http://agd.vital-it.ch/Ashbya_gossypii/geneview?gene=$id	AGR144C	unknown		1	urn:miriam:agd	^AGR\w+$	
Agilent	Ag	http://agilent.com		A_24_P98555	probe		0		A_\d+_.+	Agilent
Allergome	allergome		http://www.allergome.org/script/dettaglio.php?id_molecule=$id	1948	unknown		1	urn:miriam:allergome	^\d+$	
AmoebaDB	amoebadb		http://amoebadb.org/amoeba/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id	EDI_244000	unknown		1	urn:miriam:amoebadb	^EDI_\d+$	
Anatomical Therapeutic Chemical	atc		http://www.whocc.no/atc_ddd_index/?code=$id	A10BA02	unknown		1	urn:miriam:atc	^\w(\d+)?(\w{1,2})?(\d+)?$	
Anatomical Therapeutic Chemical Vetinary	atcvet		http://www.whocc.no/atcvet/atcvet_index/?code=$id	QJ51RV02	unknown		1	urn:miriam:atcvet	^Q[A-Z0-9]+$	
Animal Diversity Web	adw		http://animaldiversity.ummz.umich.edu/accounts/$id/	Lycalopex_vetulus	unknown		1	urn:miriam:adw	^[A-Z_a-z]+$	
Animal Genome Cattle QTL	cattleqtldb		http://www.animalgenome.org/cgi-bin/QTLdb/BT/qdetails?QTL_ID=$id	4685	unknown		1	urn:miriam:cattleqtldb	^\d+$	
Animal Genome Chicken QTL	chickenqtldb		http://www.animalgenome.org/cgi-bin/QTLdb/GG/qdetails?QTL_ID=$id	14362	unknown		1	urn:miriam:chickenqtldb	^\d+$	
Animal Genome Pig QTL	pigqtldb		http://www.animalgenome.org/cgi-bin/QTLdb/SS/qdetails?QTL_ID=$id	14	unknown		1	urn:miriam:pigqtldb	^\d+$	
Animal Genome Sheep QTL	sheepqtldb		http://www.animalgenome.org/cgi-bin/QTLdb/OA/qdetails?QTL_ID=$id	19803	unknown		1	urn:miriam:sheepqtldb	^\d+$	
Animal TFDB Family	atfdb.family		http://www.bioguo.org/AnimalTFDB/family.php?fam=$id	CUT	unknown		1	urn:miriam:atfdb.family	^\w+$	
AntWeb	antweb		http://www.antweb.org/specimen.do?name=$id	casent0106247	unknown		1	urn:miriam:antweb	^casent\d+(\-D\d+)?$	
AOP-Wiki KE	AopKe	https://aopwiki.org/	https://aopwiki.org/events/$id	3	unknown		1	urn:miriam:aop.events	^\d+$	AOP-Wiki Key Events
AOP-Wiki AOP	Aop	https://aopwiki.org/	https://aopwiki.org/aops/$id	3	pathway		1	urn:miriam:aop	^\d+$	AOP-Wiki Adverse Outcome Pathway
AOP-Wiki KER	AopKer	https://aopwiki.org/	https://aopwiki.org/relationships/$id	5	interaction		1	urn:miriam:aop.relationships	^\d+$	AOP-Wiki Key Event Relationships
AOP-Wiki Stressor	AopS	https://aopwiki.org/	https://aopwiki.org/stressors/	222	metabolite		1	urn:miriam:aop.stressor	^\d+$	AOP-Wiki Stressor
APD	apd		http://aps.unmc.edu/AP/database/query_output.php?ID=$id	01001	unknown		1	urn:miriam:apd	^\d{5}$	
AphidBase Transcript	aphidbase.transcript		http://isyip.genouest.org/apps/grs-2.2/grs?reportID=aphidbase_transcript_report&objectID=$id	ACYPI000159	unknown		1	urn:miriam:aphidbase.transcript	^ACYPI\d{6}(-RA)?$	
ArachnoServer	arachnoserver		http://www.arachnoserver.org/toxincard.html?id=$id	AS000060	unknown		1	urn:miriam:arachnoserver	^AS\d{6}$	
ArrayExpress	arrayexpress		http://www.ebi.ac.uk/arrayexpress/experiments/$id	E-MEXP-1712	unknown		1	urn:miriam:arrayexpress	^[AEP]-\w{4}-\d+$	
ArrayExpress Platform	arrayexpress.platform		http://www.ebi.ac.uk/arrayexpress/arrays/$id	A-GEOD-50	unknown		1	urn:miriam:arrayexpress.platform	^[AEP]-\w{4}-\d+$	
arXiv	arxiv		http://arxiv.org/abs/$id	0807.4956v1	unknown		1	urn:miriam:arxiv	^(\w+(\-\w+)?(\.\w+)?/)?\d{4,7}(\.\d{4}(v\d+)?)?$	
ASAP	asap		http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=$id	ABE-0009634	unknown		1	urn:miriam:asap	^[A-Za-z0-9-]+$	
AspGD Locus	aspgd.locus		http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=$id	ASPL0000349247	unknown		1	urn:miriam:aspgd.locus	^[A-Za-z_0-9]+$	
AspGD Protein	aspgd.protein		http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=$id	ASPL0000349247	unknown		1	urn:miriam:aspgd.protein	^[A-Za-z_0-9]+$	
ATCC	atcc		http://www.lgcstandards-atcc.org/Products/All/$id.aspx	11303	unknown		1	urn:miriam:atcc	^\d+$	
AutDB	autdb		http://autism.mindspec.org/GeneDetail/$id	ADA	unknown		1	urn:miriam:autdb	^[A-Z]+[A-Z-0-9]{2,}$	
BacMap Biography	bacmap.biog		http://bacmap.wishartlab.com/organisms/$id	1050	unknown		1	urn:miriam:bacmap.biog	^\d+$	
BacMap Map	bacmap.map		http://bacmap.wishartlab.com/maps/$id/index.html	AP011135	unknown		1	urn:miriam:bacmap.map	^\w+(\_)?\d+(\.\d+)?$	
BDGP EST	bdgp.est		http://www.ncbi.nlm.nih.gov/nucest/$id	EY223054.1	unknown		1	urn:miriam:bdgp.est	^\w+(\.)?(\d+)?$	
BDGP insertion DB	bdgp.insertion		http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$id	KG09531	unknown		1	urn:miriam:bdgp.insertion	^\w+$	
BeetleBase	beetlebase		http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$id	TC010103	unknown		1	urn:miriam:beetlebase	^TC\d+$	
Bgee family	bgee.family		http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=$id	ENSFM00500000270089	unknown		1	urn:miriam:bgee.family	^(ENSFM|ENSGTV:)\d+$	
Bgee gene	bgee.gene		http://bgee.unil.ch/bgee/bgee?page=gene&action=summary&gene_id=$id	ENSDARG00000013057	unknown		1	urn:miriam:bgee.gene	^(ENS|FBgn)\w+$	
Bgee organ	bgee.organ		http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_id=$id&organ_children=on	EHDAA:2185	unknown		1	urn:miriam:bgee.organ	^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\:\d+$	
Bgee stage	bgee.stage		http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_id=$id&stage_children=on	HsapDO:0000004	unknown		1	urn:miriam:bgee.stage	^(FBvd|XtroDO|HsapDO|MmusDO)\:\d+$	
BIND	Bi	http://www.bind.ca/	http://www.bind.ca/Action?identifier=bindid&idsearch=$id		interaction		1	urn:miriam:bind	^\d+$	BIND
BindingDB	bindingDB		http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=$id	22360	unknown		1	urn:miriam:bindingDB	^\d+$	
BioCarta Pathway	biocarta.pathway		http://www.biocarta.com/pathfiles/$id.asp	h_aktPathway	unknown		1	urn:miriam:biocarta.pathway	^([hm]\_)?\w+Pathway$	
BioCatalogue	biocatalogue.service		https://www.biocatalogue.org/services/$id	614	unknown		1	urn:miriam:biocatalogue.service	^\d+$	
BioCyc	Bc	http://biocyc.org	http://biocyc.org/getid?id=$id	ECOLI:CYT-D-UBIOX-CPLX	gene		1	urn:miriam:biocyc	^[A-Z-0-9]+(?<!CHEBI)(\:)?[A-Za-z0-9+_.%-]+$	BioCyc
BioGrid	Bg	http://thebiogrid.org/	http://thebiogrid.org/$id	31623	interaction		1	urn:miriam:biogrid	^\d+$	BioGRID
BioModels Database	Bm	http://www.ebi.ac.uk/biomodels/	http://www.ebi.ac.uk/biomodels-main/$id	BIOMD0000000048	pathway		1	urn:miriam:biomodels.db	^((BIOMD|MODEL)\d{10})|(BMID\d{12})$	BioModels Database
BioNumbers	bionumbers		http://www.bionumbers.hms.harvard.edu/bionumber.aspx?s=y&id=$id&ver=1	104674	unknown		1	urn:miriam:bionumbers	^\d+$	
Bioontology MESH	MSH	http://bioportal.bioontology.org/	http://purl.bioontology.org/ontology/MSH/$id	C536282	unknown		1	urn:miriam:mesh		
Bioontology UMLS NCIM	NCIM		http://linkedlifedata.com/resource/umls/id/$id	C3203102	unknown		1			
BioPortal	bioportal		http://bioportal.bioontology.org/ontologies/$id	1046	unknown		1	urn:miriam:bioportal	^\d+$	
BioProject	bioproject		http://www.ncbi.nlm.nih.gov/bioproject?term=$id	PRJDB3	unknown		1	urn:miriam:bioproject	^PRJ[DEN][A-Z]\d+$	
BioSample	biosample		http://www.ebi.ac.uk/biosamples/browse.html?keywords=$id	SAMEG70402	unknown		1	urn:miriam:biosample	^\w{3}[NE](\w)?\d+$	
BioSharing	biosharing		http://www.biosharing.org/$id	bsg-000052	unknown		1	urn:miriam:biosharing	^bsg-\d{6}$	
BioSystems	Bs	http://www.ncbi.nlm.nih.gov/biosystems/	http://www.ncbi.nlm.nih.gov/biosystems/$id	001	pathway		1	urn:miriam:biosystems	^\d+$	BioSystems
BitterDB Compound	bitterdb.cpd		http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$id	46	unknown		1	urn:miriam:bitterdb.cpd	^\d+$	
BitterDB Receptor	bitterdb.rec		http://bitterdb.agri.huji.ac.il/bitterdb/Receptor.php?id=$id	1	unknown		1	urn:miriam:bitterdb.rec	^\d+$	
BOLD Taxonomy	bold.taxonomy		http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$id	27267	unknown		1	urn:miriam:bold.taxonomy	^\d+$	
BRENDA	Br	http://www.brenda-enzymes.org/	http://www.brenda-enzymes.org/php/result_flat.php4?ecno=$id	1.1.1.1	unknown		1	urn:miriam:brenda	^((\d+\.-\.-\.-)|(\d+\.\d+\.-\.-)|(\d+\.\d+\.\d+\.-)|(\d+\.\d+\.\d+\.\d+))$	BRENDA
Brenda Tissue Ontology	bto		http://purl.bioontology.org/ontology/BTO/$id	BTO:0000146	unknown		1	urn:miriam:bto	^BTO:\d{7}$	
Broad Fungal Genome Initiative	broad		http://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$id	S7000002168151102	unknown		1	urn:miriam:broad	^S\d+$	
BugBase Expt	bugbase.expt		http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?expt_id=$id&action=view	288	unknown		1	urn:miriam:bugbase.expt	^\d+$	
BugBase Protocol	bugbase.protocol		http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?protocol_id=$id&amp%3Baction=view	67	unknown		1	urn:miriam:bugbase.protocol	^\d+$	
BYKdb	bykdb		http://bykdb.ibcp.fr/data/html/annotated/$id.html	A0AYT5	unknown		1	urn:miriam:bykdb	^\w+$	
CABRI	cabri		http://www.fr.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+%5B$id%5D	dsmz_mutz-id:ACC 291	unknown		1	urn:miriam:cabri	^([A-Za-z]+)?(\_)?([A-Za-z-]+)\:([A-Za-z0-9 ]+)$	
Canadian Drug Product Database	cdpd		http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=$id	63250	unknown		1	urn:miriam:cdpd	^\d+$	
Candida Genome Database	cgd		http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$id	CAL0003079	unknown		1	urn:miriam:cgd	^CAL\d{7}$	
CAPS-DB	caps		http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=$id	434	unknown		1	urn:miriam:caps	^\d+$	
CAS	Ca	https://commonchemistry.cas.org/	https://commonchemistry.cas.org/detail?cas_rn=$id	50-00-0	metabolite		1	urn:miriam:cas	^\d{1,7}\-\d{2}\-\d$	CAS
CATH domain	cath.domain		http://www.cathdb.info/domain/$id	1cukA01	unknown		1	urn:miriam:cath.domain	^\w+$	
CATH superfamily	cath.superfamily		http://www.cathdb.info/cathnode/$id	1.10.10.200	unknown		1	urn:miriam:cath.superfamily	^\d+(\.\d+(\.\d+(\.\d+)?)?)?$	
CAZy	cazy		http://www.cazy.org/$id.html	GT10	unknown		1	urn:miriam:cazy	^GT\d+$	
CCDS	Cc	http://identifiers.org/ccds/	http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=ALLFIELDS&DATA=$id	CCDS43989	gene		0	urn:miriam:ccds	^CCDS\d+\.\d+$	Consensus CDS
Cell Cycle Ontology	cco		http://bioportal.bioontology.org/ontologies/1507?p=terms&conceptid=$id	CCO:P0000023	unknown		1	urn:miriam:cco	^CCO\:\w+$	
Cell Image Library	cellimage		http://cellimagelibrary.org/images/$id	24801	unknown		1	urn:miriam:cellimage	^\d+$	
Cell Signaling Technology Antibody	cst.ab		http://www.cellsignal.com/products/$id.html	3305	unknown		1	urn:miriam:cst.ab	^\d+$	
Cell Signaling Technology Pathways	cst		http://www.cellsignal.com/reference/pathway/$id.html	Akt_PKB	unknown		1	urn:miriam:cst	^[A-Za-z0-9_-]+$	
Cell Type Ontology	cl		http://purl.bioontology.org/ontology/CL/$id	CL:0000232	unknown		1	urn:miriam:cl	^CL:\d{7}$	
CGSC Strain	cgsc		http://cgsc.biology.yale.edu/Strain.php?ID=$id	11042	unknown		1	urn:miriam:cgsc	^\d+$	
CharProt	charprot		http://www.jcvi.org/charprotdb/index.cgi/view/$id	CH_001923	unknown		1	urn:miriam:charprot	^CH_\d+$	
ChEBI	Ce	http://www.ebi.ac.uk/chebi/	http://www.ebi.ac.uk/chebi/searchId.do?chebiId=$id	CHEBI:36927	metabolite		1	urn:miriam:chebi	^CHEBI:\d+$	ChEBI
ChemBank	chembank		http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=$id	1000000	unknown		1	urn:miriam:chembank	^\d+$	
ChEMBL compound	Cl	https://www.ebi.ac.uk/chembldb/	https://www.ebi.ac.uk/chembl/compound/inspect/$id	CHEMBL308052	metabolite		1	urn:miriam:chembl.compound	^CHEMBL\d+$	
ChEMBL target	chembl.target		https://www.ebi.ac.uk/chembl/target/inspect/$id	CHEMBL3467	unknown		1	urn:miriam:chembl.target	^CHEMBL\d+$				
ChEMBL target component	chembl.targetcomponent	https://www.ebi.ac.uk/chembldb/	http://rdf.ebi.ac.uk/resource/chembl/targetcomponent/$id	CHEMBL_TC_3597	unknown		1			
LinkedChemistry ChEMBL molecule	linkedchemistry.chembl.molecule		http://linkedchemistry.info/chembl/molecule/m$id	1	unknown		1			
LinkedChemistry ChEMBL id	linkedchemistry.chembl.id		http://linkedchemistry.info/chembl/chemblid/$id	CHEMBL6329	unknown		1			
LinkedChemistry ChEMBL target  linkedchemistry.chembl.target            http://linkedchemistry.info/chembl/target/t$id  1       unknown         1  
ChemDB	chemdb		http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$id	3966782	unknown		1	urn:miriam:chemdb	^\d+$	
Chemical Component Dictionary	pdb-ccd		http://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$id	AB0	unknown		1	urn:miriam:pdb-ccd	^\w{3}$	
ChemIDplus	chemidplus	http://chem.sis.nlm.nih.gov/chemidplus/chemidheavy.jsp	http://chem.sis.nlm.nih.gov/chemidplus/direct.jsp?regno=$id	000057272	metabolite		1	urn:miriam:chemidplus	^\d+$	
Chemspider	Cs	http://www.chemspider.com/	http://www.chemspider.com/Chemical-Structure.$id.html	56586	metabolite		1	urn:miriam:chemspider	^\d+$	ChemSpider
Cint	C				probe		0			
CLDB	cldb		http://bioinformatics.istge.it/hypercldb/$id.html	cl3603	unknown		1	urn:miriam:cldb	^cl\d+$	
ClinicalTrials.gov	clinicaltrials		http://clinicaltrials.gov/ct2/show/$id	NCT00222573	unknown		1	urn:miriam:clinicaltrials	^NCT\d{8}$	
CluSTr	clustr			HUMAN:55140:308.6	unknown		1	urn:miriam:clustr	^[0-9A-Za-z]+:\d+:\d{1,5}(\.\d)?$	
CMR Gene	cmr.gene		http://cmr.jcvi.org/cgi-bin/CMR/shared/GenePage.cgi?locus=$id	NTL15EF2281	unknown		1	urn:miriam:cmr.gene	^\w+(\_)?\w+$	
CodeLink	Ge	http://www.appliedmicroarrays.com/		GE86325	probe		0			CodeLink
COGs	cogs		http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?$id	COG0001	unknown		1	urn:miriam:cogs	^COG\d+$	
COGs Function	cogs.function		http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?fun=$id	A	unknown		1	urn:miriam:cogs.function	^[A-Z]$	
COMBINE specifications	combine.specifications		http://co.mbine.org/specifications/$id	sbgn.er.level-1.version-1.2	unknown		1	urn:miriam:combine.specifications	^\w+(\-|\.|\w)*$	
Compulyeast	compulyeast		http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$id	O08709	unknown		1	urn:miriam:compulyeast	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	
ConceptWiki	ConceptWiki		http://www.conceptwiki.org/concept/$id	33a28bb2-35ed-4d94-adfd-3c96053cbaaf	unknown		1			
Conoserver	conoserver		http://www.conoserver.org/?page=card&table=protein&id=$id	2639	unknown		1	urn:miriam:conoserver	^\d+$	
Conserved Domain Database	cdd		http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$id	cd00400	unknown		1	urn:miriam:cdd	^(cd)?\d{5}$	
Coriell Cell Repositories	coriell		http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$id	GM17027	unknown		1	urn:miriam:coriell	^[A-Z]{2}\d+$	
CORUM	corum		http://mips.helmholtz-muenchen.de/genre/proj/corum/complexdetails.html?id=$id	100	unknown		1	urn:miriam:corum	^\d+$	
CryptoDB	cryptodb		http://cryptodb.org/cryptodb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id	cgd7_230	unknown		1	urn:miriam:cryptodb	^\w+	
CSA	csa		http://www.ebi.ac.uk/thornton-srv/databases/CSA_NEW/SearchResults.php?PDBID=$id	1a05	unknown		1	urn:miriam:csa	^[0-9][A-Za-z0-9]{3}$	
CTD Chemical	ctd.chemical		http://ctdbase.org/detail.go?type=chem&acc=$id	D001151	unknown		1	urn:miriam:ctd.chemical	^D\d+$	
CTD Disease	ctd.disease		http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$id	D053716	unknown		1	urn:miriam:ctd.disease	^D\d+$	
CTD Gene	ctd.gene	http://ctdbase.org/	http://ctdbase.org/basicQuery.go?bqCat=gene&bq=$id	101	gene		1	urn:miriam:ctd.gene	^\d+$	
Cube db	cubedb		http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$id/	AKR	unknown		1	urn:miriam:cubedb	^[A-Za-z_0-9]+$	
CutDB	pmap.cutdb		http://cutdb.burnham.org/relation/show/$id	25782	unknown		1	urn:miriam:pmap.cutdb	^\d+$	
CYGD	cygd		http://mips.helmholtz-muenchen.de/genre/proj/yeast/singleGeneReport.html?entry=$id	YFL039c	unknown		1	urn:miriam:cygd	^\w{2,3}\d{2,4}(\w)?$	
DailyMed	dailymed		http://dailymed.nlm.nih.gov/dailymed/lookup.cfm?setid=$id	8889bcd7-d0e9-434b-b09d-30132bd033b0	unknown		1	urn:miriam:dailymed	^[A-Za-z0-9-]+	
DARC	darc		http://darcsite.genzentrum.lmu.de/darc/view.php?id=$id	1250	unknown		1	urn:miriam:darc	^\d+$	
Database of Interacting Proteins	Dip	http://dip.doe-mbi.ucla.edu/	http://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$id	DIP-743N	interaction		1	urn:miriam:dip	^DIP[\:\-]\d{3}[EN]$	Database of Interacting Proteins
Database of Quantitative Cellular Signaling: Model	doqcs.model		http://doqcs.ncbs.res.in/template.php?y=accessiondetails&an=$id	57	unknown		1	urn:miriam:doqcs.model	^\d+$	
Database of Quantitative Cellular Signaling: Pathway	doqcs.pathway		http://doqcs.ncbs.res.in/template.php?y=pathwaydetails&pn=$id	131	unknown		1	urn:miriam:doqcs.pathway	^\d+$	
DATF	datf		http://datf.cbi.pku.edu.cn/entry-display.php?id=$id	AT1G01030.1	unknown		1	urn:miriam:datf	^AT[1-5]G\d{5}(\.\d+)?$	
DBD	dbd		http://www.transcriptionfactor.org/index.cgi?Search%2FDomain+domain%3A$id+cat%3ADBD	0045310	unknown		1	urn:miriam:dbd	^\d+$	
dbEST	dbest		http://www.ncbi.nlm.nih.gov/nucest/$id	BP100000	unknown		1	urn:miriam:dbest	^[A-Z]\d+(\.\d+)?$	
DBG2 Introns	dbg2introns		http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=$id	Cu.me.I1	unknown		1	urn:miriam:dbg2introns	^\w{1,2}\.(\w{1,2}\.)?[A-Za-z0-9]+$	
dbProbe	dbprobe		http://www.ncbi.nlm.nih.gov/probe/?term=$id	1000000	unknown		1	urn:miriam:dbprobe	^\d+$	
dbSNP	Sn	http://www.ncbi.nlm.nih.gov/sites/entrez?db=snp	http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$id	121909098	gene		1	urn:miriam:dbsnp	^\d+$	dbSNP
Degradome Database	degradome		http://degradome.uniovi.es/cgi-bin/protease/$id	Ax1	unknown		1	urn:miriam:degradome	^[AMCST][0-9x][0-9]$	
DEPOD	depod		http://www.koehn.embl.de/depod/showp.php?gene=$id	PTPN1	unknown		1	urn:miriam:depod	^[A-Z0-9]+$	
Dictybase EST	dictybase.est		http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$id	DDB0016567	unknown		1	urn:miriam:dictybase.est	^DDB\d+$	
Dictybase Gene	dictybase.gene		http://dictybase.org/gene/$id	DDB_G0267522	unknown		1	urn:miriam:dictybase.gene	^DDB_G\d+$	
DisProt	disprot		http://www.disprot.org/protein.php?id=$id	DP00001	unknown		1	urn:miriam:disprot	^DP\d{5}$	
DOI	doi		http://dx.doi.org/$id	10.1038/nbt1156	unknown		1	urn:miriam:doi	^(doi\:)?\d{2}\.\d{4}.*$	
DOMMINO	dommino		http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/$id	2GC4	unknown		1	urn:miriam:dommino	^[0-9][A-Za-z0-9]{3}$	
DOOR	door		http://csbl1.bmb.uga.edu/OperonDB/genedetail.php?id=$id	60101	unknown		1	urn:miriam:door	^\d+$	
DPV	dpv		http://www.dpvweb.net/dpv/showdpv.php?dpvno=$id	100	unknown		1	urn:miriam:dpv	^\d+$	
DragonDB Allele	dragondb.allele		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id&amp%3Bclass=Allele	cho	unknown		1	urn:miriam:dragondb.allele	^\w+$	
DragonDB DNA	dragondb.dna		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id%3Bclass%3DDNA	3hB06	unknown		1	urn:miriam:dragondb.dna	^\d\w+$	
DragonDB Locus	dragondb.locus		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id&amp%3Bclass=Locus	DEF	unknown		1	urn:miriam:dragondb.locus	^\w+$	
DragonDB Protein	dragondb.protein		http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id%3Bclass%3DPeptide	AMDEFA	unknown		1	urn:miriam:dragondb.protein	^\w+$	
DRSC	drsc		http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$id	DRSC05221	unknown		1	urn:miriam:drsc	^DRSC\d+$	
DrugBank	Dr	http://www.drugbank.ca/	http://www.drugbank.ca/drugs/$id	DB00001	metabolite		1	urn:miriam:drugbank	^D(B|BSALT)(\d{1})?\d{5}$	DrugBank
Drugbank Enzymes	drugbankEnzymes	http://www.drugbank.ca/	http://www4.wiwiss.fu-berlin.de/drugbank/resource/enzymes/$id	1	unknown		1			
Drugbank Target	drugbankTarget	http://www.drugbank.ca/	http://www.drugbank.ca/molecules/$id	6511	unknown		1	urn:miriam:drugbank.target	^\d+$	
EchoBASE	echobase		http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$id	EB0170	unknown		1	urn:miriam:echobase	^EB\d+$	
EcoCyc	Eco	http://ecocyc.org/	http://ecocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=$id	325-BISPHOSPHATE-NUCLEOTIDASE-RXN	interaction	Escherichia coli	1			EcoCyc
EcoGene	Ec	http://ecogene.org/	http://ecogene.org/geneInfo.php?eg_id=$id	EG10173	gene	Escherichia coli	1	urn:miriam:ecogene	^EG\d+$	EcoGene
EcoliWiki	ecoliwiki		http://ecoliwiki.net/colipedia/index.php/$id:Gene	aaeA	unknown		1	urn:miriam:ecoliwiki	^[A-Za-z0-9-]+$	
EDAM Ontology	edam		http://purl.bioontology.org/ontology/EDAM/$id	1664	unknown		1	urn:miriam:edam	^(data|topic|operation|format)\_\d{4}$	
eggNOG	eggnog		http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$id	veNOG12876	unknown		1	urn:miriam:eggnog	^\w+$	
ELM	elm		http://elm.eu.org/elms/elmPages/$id.html	CLV_MEL_PAP_1	unknown		1	urn:miriam:elm	^[A-Za-z_0-9]+$	
EMBL	Em	http://www.ebi.ac.uk/embl/	http://www.ebi.ac.uk/ena/data/view/$id	X58356	gene		1	urn:miriam:ena.embl	^[A-Z]+[0-9]+$	European Nucleotide Archive
Ensembl	En	http://www.ensembl.org/	http://ensemblgenomes.org/id/$id	ENSG00000139618	gene		1	urn:miriam:ensembl	^((ENS[A-Z]*[FPTG]\d{11}(\.\d+)?)|(FB\w{2}\d{7})|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?)|([A-Z_a-z0-9]+(\.)?(t)?(\d+)?([a-z])?))$	Ensembl
Ensembl B. subtilis	EnBs	http://www.ensembl.org	http://bacteria.ensembl.org/Bacillus/B_subtilis/Gene/Summary?g=$id	EBBACG00000000013	gene	Bacillus subtilis	1		EBBACG\d{11}	Ensembl
Ensembl Bacteria	ensembl.bacteria		http://bacteria.ensembl.org/id/$id	MU9_3181	unknown		1	urn:miriam:ensembl.bacteria	^((EB\w+)|([A-Z0-9]+\_[A-Z0-9]+))$	
Ensembl C. elegans	EnCe	http://www.ensembl.org	http://www.ensembl.org/Caenorhabditis_elegans/Gene/Summary?g=$id	Y42H9B.1	gene	Caenorhabditis elegans	1			Ensembl
Ensembl Chicken	EnGg	http://www.ensembl.org	http://www.ensembl.org/Gallus_gallus/Gene/Summary?g=$id	ENSGALG00000021736	gene	Gallus gallus	1		ENSGALG\d{11}	Ensembl
Ensembl Chimp	EnPt	http://www.ensembl.org	http://www.ensembl.org/Pan_troglodytes/Gene/Summary?g=$id	ENSPTRG00000036034	gene	Pan troglodytes	1		ENSPTRG\d{11}	Ensembl
Ensembl Cow	EnBt	http://www.ensembl.org	http://www.ensembl.org/Bos_taurus/Gene/Summary?g=$id	ENSBTAG00000043548	gene	Bos taurus	1		ENSBTAG\d{11}	Ensembl
Ensembl Dog	EnCf	http://www.ensembl.org	http://www.ensembl.org/Canis_familiaris/Gene/Summary?g=$id	ENSCAFG00000025860	gene	Canis familiaris	1		ENSCAFG\d{11}	Ensembl
Ensembl E. coli	EnEc	http://www.ensembl.org	http://bacteria.ensembl.org/Escherichia_Shigella/E_coli_K12/Gene/Summary?g=$id	EBESCG00000000010	gene	Escherichia coli	1		EBESCG\d{11}	Ensembl
Ensembl Fruitfly	EnDm	http://www.ensembl.org	http://www.ensembl.org/Drosophila_melanogaster/Gene/Summary?g=$id	FBgn0032956	gene	Drosophila melanogaster	1		FBgn\d{7}	Ensembl
Ensembl Fungi	ensembl.fungi		http://fungi.ensembl.org/id/$id	CADAFLAT00006211	unknown		1	urn:miriam:ensembl.fungi	^[A-Z-a-z0-9]+$	
Ensembl Horse	EnQc	http://www.ensembl.org	http://www.ensembl.org/Equus_caballus/Gene/Summary?g=$id	ENSECAG00000026160	gene	Equus caballus	1		ENSECAG\d{11}	Ensembl
Ensembl Human	EnHs	http://www.ensembl.org	http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=$id	ENSG00000139618	gene	Homo sapiens	1		ENSG\d{11}	Ensembl
Ensembl M. tuberculosis	EnMx	http://www.ensembl.org	http://bacteria.ensembl.org/Mycobacterium/M_tuberculosis_H37Rv/Gene/Summary?g=$id	EBMYCG00000003122	gene	Mycobacterium tuberculosis	1		EBMYCG\d{11}	Ensembl
Ensembl Metazoa	ensembl.metazoa		http://metazoa.ensembl.org/id/$id	FBtr0084214	unknown		1	urn:miriam:ensembl.metazoa	^\w+(\.)?\d+$	
Ensembl Mosquito	EnAg	http://www.ensembl.org	http://www.ensembl.org/Anopheles_gambiae/Gene/Summary?_q=$id	AGAP006864	gene	Anopheles gambiae	1		AGAP\d{6}	Ensembl
Ensembl Mouse	EnMm	http://www.ensembl.org	http://www.ensembl.org/Mus_musculus/Gene/Summary?g=$id	ENSMUSG00000017167	gene	Mus musculus	1		ENSMUSG\d{11}	Ensembl
Ensembl Pig	EnSs	http://www.ensembl.org	http://www.ensembl.org/Sus_scrofa/Gene/Summary?g=$id	ENSSSCG00000004244	gene	Sus scrofa	1		ENSSSCG\d{11}	Ensembl
Ensembl Plants	EP	http://plants.ensembl.org/	http://plants.ensembl.org/id/$id	AT1G73965	gene		1	urn:miriam:ensembl.plant	^\w+(\.\d+)?(\.\d+)?$	Ensembl Plants
Ensembl Protists	ensembl.protist		http://protists.ensembl.org/id/$id	PFC0120w	unknown		1	urn:miriam:ensembl.protist	^\w+$	
Ensembl Rat	EnRn	http://www.ensembl.org	http://www.ensembl.org/Rattus_norvegicus/Gene/Summary?g=$id	ENSRNOG00000016648	gene	Rattus norvegicus	1		ENSRNOG\d{11}	Ensembl
Ensembl Xenopus	EnXt	http://www.ensembl.org	http://www.ensembl.org/Xenopus_tropicalis/Gene/Summary?g=$id	ENSXETG00000029448	gene	Xenopus tropicalis	1		ENSXETG\d{11}	Ensembl
Ensembl Yeast	EnSc	http://www.ensembl.org	http://www.ensembl.org/Saccharomyces_cerevisiae/Gene/Summary?g=$id	YGR147C	gene	Saccharomyces cerevisiae	1		Y[A-Z][RL]\d{3}[WC](?:\-[A-Z])?	Ensembl
Ensembl Zebrafish	EnDr	http://www.ensembl.org	http://www.ensembl.org/Danio_rerio/Gene/Summary?g=$id	ENSDARG00000024771	gene	Danio rerio	1		ENSDARG\d{11}	Ensembl
Entrez Gene	L	http://www.ncbi.nlm.nih.gov/gene	http://www.ncbi.nlm.nih.gov/gene/$id	100010	gene		1	urn:miriam:ncbigene	^\d+$	Entrez Gene
Enzyme Nomenclature	E	http://www.ebi.ac.uk/intenz/	http://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$id	1.1.1.1	gene		1	urn:miriam:ec-code	^\d+\.-\.-\.-|\d+\.\d+\.-\.-|\d+\.\d+\.\d+\.-|\d+\.\d+\.\d+\.(n)?\d+$	Enzyme Nomenclature
EPD	epd		http://epd.vital-it.ch/cgi-bin/query_result.pl?out_format=NICE&Entry_0=$id	TA_H3	unknown		1	urn:miriam:epd	^[A-Z-_0-9]+$	
Evidence Code Ontology	eco		http://www.ebi.ac.uk/ontology-lookup/?termId=$id	ECO:0000006	unknown		1	urn:miriam:eco	ECO:\d{7}$	
Experimental Factor Ontology	efo		http://www.ebi.ac.uk/ontology-lookup/?termId=EFO%3A$id	0004859	unknown		1	urn:miriam:efo	^\d{7}$	
F-SNP	fsnp		http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&amp%3Bid_type=snp_id&amp%3Bid_val=$id	rs17852708	unknown		1	urn:miriam:fsnp	^rs\d+$	
FlyBase	F	http://flybase.org/	http://flybase.org/reports/$id.html	FBgn0011293	gene	Drosophila melanogaster	1	urn:miriam:flybase	^FB\w{2}\d{7}$	FlyBase
Flystock	flystock		http://flystocks.bio.indiana.edu/Reports/$id.html	33159	unknown		1	urn:miriam:flystock	^\d+$	
FMA	fma		http://www.ebi.ac.uk/ontology-lookup/?termId=$id	FMA:67112	unknown		1	urn:miriam:fma	^FMA:\d+$	
FunCat	funcat		http://mips.helmholtz-muenchen.de/cgi-bin/proj/funcatDB/search_advanced.pl?action=2&wert=$id	32.01.01	unknown		1	urn:miriam:funcat	^\d{2}|\d{2}\.\d{2}|\d{2}\.\d{2}\.\d{2}|\d{2}\.\d{2}\.\d{2}\d{2}$	
FuncBase Fly	funcbase.fly		http://func.mshri.on.ca/fly/genes/list_functional_scores/$id	10194	unknown		1	urn:miriam:funcbase.fly	^\d+$	
FuncBase Human	funcbase.human		http://func.mshri.on.ca/human/genes/list_functional_scores/$id	119514	unknown		1	urn:miriam:funcbase.human	^\d+$	
FuncBase Mouse	funcbase.mouse		http://func.mshri.on.ca/mouse/genes/list_functional_scores/$id	1351341	unknown		1	urn:miriam:funcbase.mouse	^\d+$	
FuncBase Yeast	funcbase.yeast		http://func.mshri.on.ca/yeast/genes/list_functional_scores/$id	2701	unknown		1	urn:miriam:funcbase.yeast	^\d+$	
Fungal Barcode	fbol		http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal+barcodes&Rec=$id&Fields=All&ExactMatch=T	2224	unknown		1	urn:miriam:fbol	^\d+$	
FungiDB	fungidb		http://fungidb.org/gene/$id	CNBG_0001	unknown		1	urn:miriam:fungidb	^[A-Za-z_0-9]+$	
GABI	gabi		http://gabi.rzpd.de/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$id&Mode=ShowBioObject	2679240	unknown		1	urn:miriam:gabi	^\w+$	
Genatlas	genatlas		http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$id	HBB	unknown		1	urn:miriam:genatlas	^\w+$	
GenBank	G	http://www.ncbi.nlm.nih.gov/genbank/	http://www.ncbi.nlm.nih.gov/nuccore/$id	NW_004190323	gene		0	urn:miriam:insdc	^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$	GenBank
Gene Ontology Reference	go.ref		http://www.geneontology.org/cgi-bin/references.cgi#$id	GO_REF:0000041	unknown		1	urn:miriam:go.ref	^GO_REF:\d{7}$	
Gene Wiki	Gw	http://en.wikipedia.org/wiki/Portal:Gene_Wiki	http://plugins.biogps.org/cgi-bin/wp.cgi?id=$id	1017	gene		0	urn:miriam:genewiki	^\d+$	Gene Wiki
GeneCards	genecards		http://bioinformatics.mdanderson.org/genecards/cgi-bin/carddisp.pl?gene=$id	ABL1	unknown		1	urn:miriam:genecards	^\w+$	
GeneDB	genedb		http://www.genedb.org/gene/$id	Cj1536c	unknown		1	urn:miriam:genedb	^[\w\d\.-]*$	
GeneFarm	genefarm		http://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$id	4892	unknown		1	urn:miriam:genefarm	^\d+$	
GeneOntology	T	http://www.ebi.ac.uk/QuickGO/	http://www.ebi.ac.uk/QuickGO/GTerm?id=$id	GO:0006915	ontology		1	urn:miriam:go	^GO:\d{7}$	Gene Ontology
GeneTree	genetree		http://www.ensembl.org/Multi/GeneTree/Image?db=core%3Bgt%3D$id	ENSGT00550000074763	unknown		1	urn:miriam:genetree	^ENSGT\d+$	
Genome Properties	genprop		http://cmr.jcvi.org/tigr-scripts/CMR/shared/GenomePropDefinition.cgi?prop_acc=$id	GenProp0151	unknown		1	urn:miriam:genprop	^GenProp\d+$	
GenPept	genpept		http://www.ncbi.nlm.nih.gov/protein/$id?report=genpept	CAA71118.1	unknown		1	urn:miriam:genpept	^\w{3}\d{5}(\.\d+)?$	
GEO	geo		http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=$id	GDS1234	unknown		1	urn:miriam:geo	^GDS\d+$	
GiardiaDB	giardiadb		http://giardiadb.org/giardiadb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id	GL50803_102438	unknown		1	urn:miriam:giardiadb	^\w+$	
GLIDA GPCR	glida.gpcr		http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$id	ACM1_HUMAN	unknown		1	urn:miriam:glida.gpcr	^[A-Z-_0-9]+$	
GLIDA Ligand	glida.ligand		http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$id	L000001	unknown		1	urn:miriam:glida.ligand	^L\d+$	
GlycoEpitope	glycoepitope		http://www.glyco.is.ritsumei.ac.jp/epitope-bin/epitope.cgi?mode=general&epitope_id=$id	EP0311	unknown		1	urn:miriam:glycoepitope	^EP\d{4}$	
GlycomeDB	glycomedb		http://www.glycome-db.org/database/showStructure.action?glycomeId=$id	1	unknown		1	urn:miriam:glycomedb	^\d+$	
GOA	goa	http://www.ebi.ac.uk/GOA/	http://www.ebi.ac.uk/QuickGO/GProtein?ac=$id	P12345	unknown		1	urn:miriam:goa	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	
GOLD genome	gold.genome		http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$id	Gi07796	unknown		1	urn:miriam:gold.genome	^[Gi|Gc]\d+$	
GOLD metadata	gold.meta		http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$id	Gm00047	unknown		1	urn:miriam:gold.meta	^Gm\d+$	
Golm Metabolome Database	gmd		http://gmd.mpimp-golm.mpg.de/Metabolites/$id.aspx	68513255-fc44-4041-bc4b-4fd2fae7541d	unknown		1	urn:miriam:gmd	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	
Golm Metabolome Database Analyte	gmd.analyte		http://gmd.mpimp-golm.mpg.de/Analytes/$id	4f0fa9b6-514f-4ff4-98cc-0009bc08eb80	unknown		1	urn:miriam:gmd.analyte	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	
Golm Metabolome Database GC-MS spectra	gmd.gcms		http://gmd.mpimp-golm.mpg.de/Spectrums/$id	53d583d8-40c6-40e1-9296-23f821cd77a5	unknown		1	urn:miriam:gmd.gcms	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	
Golm Metabolome Database Profile	gmd.profile		http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$id	10b38aaf-b977-4950-85b8-f4775f66658d	unknown		1	urn:miriam:gmd.profile	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	
Golm Metabolome Database Reference Substance	gmd.ref		http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$id	8cf84adb-b4db-4807-ac98-0004247c35df	unknown		1	urn:miriam:gmd.ref	^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$	
GPCRDB	gpcrdb		http://www.gpcr.org/7tm/proteins/$id	RL3R1_HUMAN	unknown		1	urn:miriam:gpcrdb	^\w+$	
Gramene Arabidopsis	EnAt	http://www.gramene.org/	http://www.gramene.org/Arabidopsis_thaliana/Gene/Summary?g=$id	ATMG01360-TAIR-G	gene	Arabidopsis thaliana	1		AT[\dCM]G\d{5}\-TAIR\-G	Grameen Arabidopsis
Gramene Genes DB	Gg	http://www.gramene.org/	http://www.gramene.org/db/genes/search_gene?acc=$id	GR:0060184	gene		1	urn:miriam:gramene.gene	^GR\:\d+$	Gramene Genes
Gramene Growth Stage Ontology	gramene.growthstage		http://www.gramene.org/db/ontology/search?id=$id	GRO:0007133	unknown		1	urn:miriam:gramene.growthstage	^GRO\:\d+$	
Gramene Literature	Gl	http://www.gramene.org/	http://www.gramene.org/db/literature/pub_search?ref_id=$id	6200	gene		0			Gramene Literature
Gramene Maize	EnZm	http://www.ensembl.org	http://www.maizesequence.org/Zea_mays/Gene/Summary?g=$id	GRMZM2G174107	gene		1			Gramene Maize
Gramene Pathway	Gp	http://www.gramene.org/pathway		AAH72400	pathway		0			Gramene Pathway
Gramene protein	gramene.protein		http://www.gramene.org/db/protein/protein_search?protein_id=$id	78073	unknown		1	urn:miriam:gramene.protein	^\d+$	
Gramene QTL	gramene.qtl		http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$id	CQG5	unknown		1	urn:miriam:gramene.qtl	^\w+$	
Gramene Rice	EnOj	http://www.gramene.org/	http://www.gramene.org/Oryza_sativa/Gene/Summary?db=core;g=$id	osa-MIR171a	gene		1			Gramene Rice
Gramene Taxonomy	gramene.taxonomy		http://www.gramene.org/db/ontology/search?id=$id	GR_tax:013681	unknown		1	urn:miriam:gramene.taxonomy	^GR\_tax\:\d+$	
GreenGenes	greengenes		http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$id	100000	unknown		1	urn:miriam:greengenes	^\d+$	
GRIN Plant Taxonomy	grin.taxonomy		http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$id	19333	unknown		1	urn:miriam:grin.taxonomy	^\d+$	
GRSDB	grsdb		http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$id	10142	unknown		1	urn:miriam:grsdb	^\d+$	
GXA Expt	gxa.expt		http://www.ebi.ac.uk/gxa/experiment/$id	E-MTAB-62	unknown		1	urn:miriam:gxa.expt	^[AEP]-\w{4}-\d+$	
GXA Gene	gxa.gene		http://www.ebi.ac.uk/gxa/gene/$id	AT4G01080	unknown		1	urn:miriam:gxa.gene	^\w+$	
Guide to Pharmacology	Gpl	http://www.guidetopharmacology.org/	http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$id	1627	metabolite		1	urn:miriam:iuphar.ligand	^\d+$	Guide to Pharmacology
H-InvDb Locus	hinv.locus		http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$id	HIX0004394	unknown		1	urn:miriam:hinv.locus	^HIX\d{7}(\.\d+)?$	
H-InvDb Protein	hinv.protein		http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$id	HIP000030660	unknown		1	urn:miriam:hinv.protein	^HIP\d{9}(\.\d+)?$	
H-InvDb Transcript	hinv.transcript		http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$id	HIT000195363	unknown		1	urn:miriam:hinv.transcript	^HIT\d{9}(\.\d+)?$	
HAMAP	hamap		http://hamap.expasy.org/unirule/$id	MF_01400	unknown		1	urn:miriam:hamap	^MF_\d+$	
HCVDB	hcvdb		http://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$id	M58335	unknown		1	urn:miriam:hcvdb	^M\d{5}$	
HGMD	hgmd		http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$id	CALM1	unknown		1	urn:miriam:hgmd	^[A-Z_0-9]+$	
HGNC	H	http://www.genenames.org	https://www.genenames.org/data/gene-symbol-report/#!/symbol/$id	DAPK1	gene	Homo sapiens	1	urn:miriam:hgnc.symbol	^[A-Za-z-0-9_]+(\@)?$	HGNC Symbol
HGNC Accession number	Hac	http://www.genenames.org	https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$id	HGNC:2674	gene	Homo sapiens	1	urn:miriam:hgnc	^(HGNC:)?\d{1,5}$	HGNC
HMDB	Ch	http://www.hmdb.ca/	http://www.hmdb.ca/metabolites/$id	HMDB00001	metabolite		1	urn:miriam:hmdb	^HMDB\d{5}$	HMDB
HOGENOM	hogenom		http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$id	HBG284870	unknown		1	urn:miriam:hogenom	^\w+$	
HOMD Sequence Metainformation	homd.seq		http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$id	SEQF1003	unknown		1	urn:miriam:homd.seq	^SEQF\d+$	
HOMD Taxonomy	homd.taxon		http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=$id&view=dynamic	811	unknown		1	urn:miriam:homd.taxon	^\d+$	
Homeodomain Research	hdr		http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&amp%3Bview=proteins&amp%3Bid=$id	63	unknown		1	urn:miriam:hdr	^\d+$	
HomoloGene	Hg	http://www.ncbi.nlm.nih.gov/homologene/	http://www.ncbi.nlm.nih.gov/homologene/$id	1000	gene		1	urn:miriam:homologene	^\d+$	HomoloGene
HOVERGEN	hovergen		http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$id&db=HOVERGEN	HBG004341	unknown		1	urn:miriam:hovergen	^HBG\d+$	
HPA	hpa		http://www.proteinatlas.org/$id	ENSG00000026508	unknown		1	urn:miriam:hpa	^ENSG\d{11}$	
HPRD	Hp	http://www.hprd.org/	http://www.hprd.org/protein/$id	00001	interaction	Homo sapiens	1	urn:miriam:hprd	^\d+$	HPRD
HsGene	Hs				gene	Homo sapiens	1			
HSSP	hssp		ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/$id.hssp.bz2	102l	unknown		1	urn:miriam:hssp	^\w{4}$	
HUGE	huge		http://www.kazusa.or.jp/huge/gfpage/$id/	KIAA0001	unknown		1	urn:miriam:huge	^KIAA\d{4}$	
Human Disease Ontology	doid		http://www.ebi.ac.uk/ontology-lookup/?termId=$id	DOID:11337	unknown		1	urn:miriam:doid	^DOID\:\d+$	
ICD	icd		http://apps.who.int/classifications/icd10/browse/2010/en#/$id	C34	unknown		1	urn:miriam:icd	^[A-Z]\d+(\.[-\d+])?$	
ICEberg element	iceberg.element		http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id=$id	100	unknown		1	urn:miriam:iceberg.element	^\d+$	
ICEberg family	iceberg.family		http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id=$id	1	unknown		1	urn:miriam:iceberg.family	^\d+$	
IDEAL	ideal		http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/idealItem.php?id=$id	IID00001	unknown		1	urn:miriam:ideal	^IID\d+$	
Illumina	Il	http://www.illumina.com/		ILMN_5668	probe		0		ILMN_\d+	Illumina
IMEx	imex		http://www.ebi.ac.uk/intact/imex/main.xhtml?query=$id	IM-12080-80	unknown		1	urn:miriam:imex	^IM-\d+(-?)(\d+?)$	
IMGT HLA	imgt.hla		http://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?$id	A*01:01:01:01	unknown		1	urn:miriam:imgt.hla	^[A-Z0-9*:]+$	
IMGT LIGM	imgt.ligm		http://genius.embnet.dkfz-heidelberg.de/menu/cgi-bin/srs7.1.3.1/wgetz?-id+4ktAl1fNMTA+-e+%5BIMGT%3A%27$id%27%5D	M94112	unknown		1	urn:miriam:imgt.ligm	^M\d+$	
InChI	inchi		http://www.chemspider.com/$id	InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3	unknown		1	urn:miriam:inchi	^InChI\=1S\/[A-Za-z0-9]+(\/[cnpqbtmsih][A-Za-z0-9\-\+\(\)\,]+)+$	
InChIKey	inchikey		http://cactus.nci.nih.gov/chemical/structure/$id/names	RYYVLZVUVIJVGH-UHFFFAOYSA-N	unknown		1	urn:miriam:inchikey	^[A-Z]{14}\-[A-Z]{10}(\-[A-N])?	
IntAct	Ia	http://www.ebi.ac.uk/intact/	http://www.ebi.ac.uk/intact/pages/details/details.xhtml?interactionAc=$id	EBI-2307691	interaction		1	urn:miriam:intact	^EBI\-[0-9]+$	IntAct
IntAct Molecule	intact.molecule		http://www.ebi.ac.uk/intact/molecule/$id	EBI-366083	unknown		1	urn:miriam:intact.molecule	^EBI\-[0-9]+$	
Integrated Microbial Genomes Gene	img.gene		http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$id	638309541	unknown		1	urn:miriam:img.gene	^\d+$	
Integrated Microbial Genomes Taxon	img.taxon		http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$id	648028003	unknown		1	urn:miriam:img.taxon	^\d+$	
InterPro	I	http://www.ebi.ac.uk/interpro/	http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=$id	IPR000100	protein		1	urn:miriam:interpro	^IPR\d{6}$	InterPro
IPI	Ip	http://www.ebi.ac.uk/IPI	http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$id&format=default	IPI00000001	protein		1	urn:miriam:ipi	^IPI\d{8}$	IPI
IRD Segment Sequence	ird.segment		http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$id	CY077097	unknown		1	urn:miriam:ird.segment	^\w+(\_)?\d+(\.\d+)?$	
iRefWeb	irefweb		http://wodaklab.org/iRefWeb/interaction/show/$id	617102	unknown		1	urn:miriam:irefweb	^\d+$	
IRGSP Gene	Ir	http://rgp.dna.affrc.go.jp/IRGSP/		Os12g0561000	gene		1		Os\d{2}g\d+	IRGSP Gene
ISBN	isbn		http://www.worldcat.org/isbn/$id	9781584885658	unknown		1	urn:miriam:isbn	^(ISBN)?(-13|-10)?[:]?[ ]?(\d{2,3}[ -]?)?\d{1,5}[ -]?\d{1,7}[ -]?\d{1,6}[ -]?(\d|X)$	
ISFinder	isfinder		http://www-is.biotoul.fr/index.html?is_special_name=$id	ISA1083-2	unknown		1	urn:miriam:isfinder	^IS\w+(\-\d)?$	
ISSN	issn		http://catalog.loc.gov/cgi-bin/Pwebrecon.cgi?Search_Arg=0745-4570$id&PID=le0kCQllk84KcxI3gMhUTowLMnn9H	0745-4570	unknown		1	urn:miriam:issn	^\d{4}\-\d{4}$	
IUPHAR family	iuphar.family		http://www.iuphar-db.org/DATABASE/FamilyMenuForward?familyId=$id	78	unknown		1	urn:miriam:iuphar.family	^\d+$	
IUPHAR ligand	iuphar.ligand		http://www.iuphar-db.org/DATABASE/LigandDisplayForward?ligandId=$id	1755	unknown		1	urn:miriam:iuphar.ligand	^\d+$	
IUPHAR receptor	iuphar.receptor		http://www.iuphar-db.org/DATABASE/ObjectDisplayForward?objectId=$id	101	unknown		1	urn:miriam:iuphar.receptor	^\d+$	
Japan Chemical Substance Dictionary	jcsd		http://nikkajiweb.jst.go.jp/nikkaji_web/pages/top_e.jsp?CONTENT=syosai&SN=$id	J55.713G	unknown		1	urn:miriam:jcsd	^J\d{1,3}(\.\d{3})?(\.\d{1,3})?[A-Za-z]$	
Japan Collection of Microorganisms	jcm		http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$id	17254	unknown		1	urn:miriam:jcm	^\d+$	
JAX Mice	jaxmice		http://jaxmice.jax.org/strain/$id.html	005012	unknown		1	urn:miriam:jaxmice	^\d+$	
JCGGDB	jcggdb		http://jcggdb.jp/idb/jcggdb/$id	JCGG-STR008690	unknown		1	urn:miriam:jcggdb	^JCGG-STR\d{6}$	
JSTOR	jstor		http://www.jstor.org/stable/$id	3075966	unknown		1	urn:miriam:jstor	^\d+$	
JWS Online	jws		http://jjj.mib.ac.uk/webMathematica/DataBaseSelection/processModelSelection.jsp?keytype=authors&keyword=$id	curien	unknown		1	urn:miriam:jws	^\w+$	
KEGG Compound	Ck	http://www.genome.jp/kegg/ligand.html	http://www.genome.jp/dbget-bin/www_bget?cpd:$id	C12345	metabolite		1	urn:miriam:kegg.compound	^C\d+$	KEGG Compound
KEGG Disease	kegg.disease		http://www.kegg.jp/entry/$id	H00076	unknown		1	urn:miriam:kegg.disease	^H\d+$	
KEGG Drug	Kd	http://www.genome.jp/kegg/drug/	http://www.genome.jp/dbget-bin/www_bget?dr:$id	D00123	metabolite		1	urn:miriam:kegg.drug	^D\d+$	KEGG Drug
KEGG Environ	kegg.environ		http://www.kegg.jp/entry/$id	ev:E00032	unknown		1	urn:miriam:kegg.environ	^ev\:E\d+$	
KEGG Genes	Kg	http://www.genome.jp/kegg/genes.html	http://www.genome.jp/dbget-bin/www_bget?$id	syn:ssr3451	gene		1	urn:miriam:kegg.genes	^\w+:[\w\d\.-]*$	KEGG Genes
KEGG Genome	kegg.genome		http://www.kegg.jp/entry/$id	eco	unknown		1	urn:miriam:kegg.genome	^(T0\d+|\w{3,5})$	
KEGG Glycan	Kl	http://www.genome.jp/kegg/glycan/	http://www.genome.jp/dbget-bin/www_bget?gl:$id	G00123	metabolite		1	urn:miriam:kegg.glycan	^G\d+$	KEGG Glycan
KEGG Metagenome	kegg.metagenome	http://www.genome.jp/kegg/catalog/org_list3.html	http://www.kegg.jp/entry/$id	T30002	unknown		1	urn:miriam:kegg.metagenome	^T3\d+$	
KEGG Module	kegg.module		http://www.kegg.jp/entry/$id	M00002	unknown		1	urn:miriam:kegg.module	^([a-z]{3,5}_)?M\d{5}$	
KEGG Orthology	kegg.orthology	http://www.genome.jp/kegg/ko.html	http://www.genome.jp/dbget-bin/www_bget?ko+$id	K00001	protein		1	urn:miriam:kegg.orthology	^K\d+$	
KEGG Pathway	Kp	http://www.genome.jp/kegg/pathway.html	http://www.genome.jp/dbget-bin/www_bget?pathway+$id	hsa00620	pathway		1	urn:miriam:kegg.pathway	^\w{2,4}\d{5}$	KEGG Pathway
KEGG Reaction	Rk	http://www.genome.jp/kegg/reaction/	http://www.genome.jp/dbget-bin/www_bget?rn:$id	R00100	pathway		1	urn:miriam:kegg.reaction	^R\d+$	KEGG Reaction
KiSAO	biomodels.kisao		http://purl.bioontology.org/ontology/KISAO/kisao:$id	KISAO_0000057	unknown		1	urn:miriam:biomodels.kisao	^KISAO_\d+$	
KnapSack	knapsack		http://kanaya.naist.jp/knapsack_jsp/information.jsp?word=$id	C00000001	unknown		1	urn:miriam:knapsack	^C\d{8}	
Ligand Expo	ligandexpo		http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$id&operation=ccid	ABC	unknown		1	urn:miriam:ligandexpo	^(\w){3}$	
Ligand-Gated Ion Channel database	lgic		http://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$id.php	5HT3Arano	unknown		1	urn:miriam:lgic	^\w+$	
LigandBox	ligandbox		http://ligandbox.protein.osaka-u.ac.jp/ligandbox/cgi-bin/liginf.cgi?id=$id	D00001	unknown		1	urn:miriam:ligandbox	^D\d{5}	
LIPID MAPS	Lm	http://www.lipidmaps.org	https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessClassSearch&LMID=$id	LMPR0102010012	metabolite		1	urn:miriam:lipidmaps	^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$	LIPID MAPS
LipidBank	Lb	http://lipidbank.jp/index.html	http://lipidbank.jp/cgi-bin/detail.cgi?id=$id	BBA0001	metabolite		1	urn:miriam:lipidbank	^\w+\d+$	LipidBank
Locus Reference Genomic	lrg	http://www.lrg-sequence.org/	ftp://ftp.ebi.ac.uk/pub/databases/lrgex/$id.xml	LRG_258	unknown		1	urn:miriam:lrg	^LRG_\d+$	
MACiE	Ma	http://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html	http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$id	M0001	protein		1	urn:miriam:macie	^M\d{4}$	MACiE
MaizeGDB	Mg		https://maizegdb.org/gene_center/gene/$id	acc1	gene	Zea mays	1			MaizeGDB
MaizeGDB Locus	maizegdb.locus		http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$id	25011	unknown		1	urn:miriam:maizegdb.locus	^\d+$	
MassBank	massbank		http://msbi.ipb-halle.de/MassBank/jsp/Dispatcher.jsp?type=disp&id=$id	PB000166	unknown		1	urn:miriam:massbank	^[A-Z]{2}[A-Z0-9][0-9]{5}$	
MatrixDB	Md	http://matrixdb.ibcp.fr/	http://matrixdb.ibcp.fr/cgi-bin/model/report/default?name=$id&class=Association	P00747_P07355	interaction		1	urn:miriam:matrixdb.association	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$	MatrixDB
MedlinePlus	medlineplus		http://www.nlm.nih.gov/medlineplus/ency/article/$id.htm	002804	unknown		1	urn:miriam:medlineplus	^\d+$	
Melanoma Molecular Map Project Biomaps	mmmp:biomaps		http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$id	37	unknown		1	urn:miriam:mmmp:biomaps	^\d+$	
MEROPS	merops		http://merops.sanger.ac.uk/cgi-bin/pepsum?mid=$id	S01.001	unknown		1	urn:miriam:merops	^[SCTAGMNU]\d{2}\.\d{3}$	
MEROPS Family	merops.family		http://merops.sanger.ac.uk/cgi-bin/famsum?family=$id	S1	unknown		1	urn:miriam:merops.family	^[SCTAGMNU]\d+$	
MEROPS Inhibitor	merops.inhibitor		http://merops.sanger.ac.uk/cgi-bin/pepsum?id=$id	I31.952	unknown		1	urn:miriam:merops.inhibitor	^I\d{2}\.\d{3}$	
MeSH 2012	mesh.2012		http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$id&view=expanded	D018377	unknown		1	urn:miriam:mesh.2012	^[A-Za-z0-9]+$	
MeSH 2013	mesh.2013		http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$id&view=expanded	17165	unknown		1	urn:miriam:mesh.2013	^[A-Za-z0-9]+$	
MetaboLights	metabolights		http://www.ebi.ac.uk/metabolights/$id	MTBLS1	unknown		1	urn:miriam:metabolights	^MTBLS\d+$	
MetaCyc	Mc	http://www.metacyc.org/	http://www.metacyc.org/META/NEW-IMAGE?type=NIL&object=$id	D-GLUTAMATE-OXIDASE-RXN	interaction		1			MetaCyc
METLIN	metlin		http://metlin.scripps.edu/metabo_info.php?molid=$id	1455	unknown		1	urn:miriam:metlin	^\d{4}$	
MGED Ontology	mo		http://mged.sourceforge.net/ontologies/MGEDontology.php#$id	ArrayGroup	unknown		1	urn:miriam:mo	^\w+$	
MGI	M	http://www.informatics.jax.org/	http://www.informatics.jax.org/marker/$id	MGI:2442292	gene	Mus musculus	1	urn:miriam:mgd	^MGI:\d+$	Mouse Genome Database
Microbial Protein Interaction Database	mpid		http://www.jcvi.org/mpidb/experiment.php?interaction_id=$id	172	unknown		1	urn:miriam:mpid	^\d+$	
MicrosporidiaDB	microsporidia		http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id	ECU03_0820i	unknown		1	urn:miriam:microsporidia	^\w+$	
MimoDB	mimodb		http://immunet.cn/mimodb/browse.php?table=mimoset&ID=$id	1	unknown		1	urn:miriam:mimodb	^\d+$	
MINT	Mi	http://mint.bio.uniroma2.it/mint/	http://mint.bio.uniroma2.it/mint/search/inFrameInteraction.do?interactionAc=$id	MINT-10000	interaction		1	urn:miriam:mint	^MINT\-\d{1,5}$	MINT
MIPModDB	mipmod		http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$id	HOSAPI0399	unknown		1	urn:miriam:mipmod	^\w+$	
miRBase mature sequence	Mbm	http://www.mirbase.org/	http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$id	MIMAT0000001	gene		1	urn:miriam:mirbase.mature	MIMAT\d{7}	miRBase mature sequence
miRBase Sequence	Mb	http://microrna.sanger.ac.uk/	http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$id	MI0000001	gene		1	urn:miriam:mirbase	MI\d{7}	miRBase Sequence
mirEX	mirex		http://comgen.pl/mirex/?page=results%2Frecord&name=$id&web_temp=1683440&exref=pp2a&limit=yes	165a	unknown		1	urn:miriam:mirex	^\d+(\w+)?$	
MIRIAM Registry collection	miriam.collection		http://www.ebi.ac.uk/miriam/main/$id	MIR:00000008	unknown		1	urn:miriam:miriam.collection	^MIR:000\d{5}$	
MIRIAM Registry resource	miriam.resource		http://www.ebi.ac.uk/miriam/main/resources/$id	MIR:00100005	unknown		1	urn:miriam:miriam.resource	^MIR:001\d{5}$	
miRNEST	mirnest		http://lemur.amu.edu.pl/share/php/mirnest/search.php?search_term=$id	MNEST029358	unknown		1	urn:miriam:mirnest	^MNEST\d+$	
MMRRC	mmrrc		http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$id	70	unknown		1	urn:miriam:mmrrc	^\d+$	
ModelDB	modeldb		http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$id	45539	unknown		1	urn:miriam:modeldb	^\d+$	
Molbase	molbase		http://www.molbase.com/en/index.php?app=search&search_keyword=$id	128796-39-4	unknown		1	urn:miriam:molbase	^(\d{1,7}\-\d{2}\-\d)|([A-Za-z0-9\+\-\_]+)$	
Molecular Interactions Ontology	psimi		http://purl.bioontology.org/ontology/PPIO/$id	MI:0308	unknown		1	urn:miriam:psimi	^MI:\d{4}$	
Molecular Modeling Database	mmdb		http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$id	50885	unknown		1	urn:miriam:mmdb	^\d{1,5}$	
Mouse Adult Gross Anatomy	ma		http://www.informatics.jax.org/searches/AMA.cgi?id=$id	MA:0002502	unknown		1	urn:miriam:ma	^MA:\d+$	
MycoBank	mycobank		http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=$id	349124	unknown		1	urn:miriam:mycobank	^\d+$	
MycoBrowser leprae	myco.lepra		http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$id	ML0224	unknown		1	urn:miriam:myco.lepra	^ML\w+$	
MycoBrowser marinum	myco.marinum		http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$id	MMAR_2462	unknown		1	urn:miriam:myco.marinum	^MMAR\_\d+$	
MycoBrowser smegmatis	myco.smeg		http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$id	MSMEG_3769	unknown		1	urn:miriam:myco.smeg	^MSMEG\w+$	
NAPP	napp		http://napp.u-psud.fr/Niveau2.php?specie=$id	351	unknown		1	urn:miriam:napp	^\d+$	
NARCIS	narcis		http://www.narcis.nl/publication/RecordID/$id	oai:cwi.nl:4725	unknown		1	urn:miriam:narcis	^oai\:cwi\.nl\:\d+$	
NASC code	nasc		http://arabidopsis.info/StockInfo?NASC_id=$id	N1899	unknown		1	urn:miriam:nasc	^(\w+)?\d+$	
NASC Gene	N	http://arabidopsis.info/		ATMG00960-TAIR-G	gene	Arabidopsis thaliana	1		AT[\dCM]G\d{5}\-TAIR\-G	NASC Gene
National Bibliography Number	nbn		http://nbn-resolving.org/resolver?identifier=$id&verb=full	urn:nbn:fi:tkk-004781	unknown		1	urn:miriam:nbn	^urn\:nbn\:[A-Za-z_0-9]+\:([A-Za-z_0-9]+\:)?[A-Za-z_0-9]+$	
National Drug Code	ndc		http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$id	0002-1975-61	unknown		1	urn:miriam:ndc	^\d+\-\d+\-\d+	
NCBI Protein	Np	http://www.ncbi.nlm.nih.gov/protein	http://www.ncbi.nlm.nih.gov/protein/$id	CAA71118.1	protein		1	urn:miriam:ncbiprotein	^(\w+\d+(\.\d+)?)|(NP_\d+)$	NCBI Protein
NCBI Taxonomy Database	Tn				unknown		1			
NCI Pathway Interaction Database	Pid	http://pid.nci.nih.gov/	http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$id	pi3kcipathway	pathway		1	urn:miriam:pid.pathway	^\w+$	NCI Pathway Interaction Database
NCIm	ncim		http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI+MetaThesaurus&code=$id	C0026339	unknown		1	urn:miriam:ncim	^C\d+$	
NCIt	ncit		http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI+Thesaurus&code=$id	C80519	unknown		1	urn:miriam:ncit	^C\d+$	
NeuroLex	neurolex		http://www.neurolex.org/wiki/$id	Birnlex_721	unknown		1	urn:miriam:neurolex	^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO)\d+$	
NeuroMorpho	neuromorpho		http://neuromorpho.org/neuroMorpho/neuron_info.jsp?neuron_name=$id	Rosa2	unknown		1	urn:miriam:neuromorpho	^\w+$	
NeuronDB	neurondb		http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$id	265	unknown		1	urn:miriam:neurondb	^\d+$	
NEXTDB	nextdb		http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$id	6b1	unknown		1	urn:miriam:nextdb	^[A-Za-z0-9]+$	
nextProt	nextprot		http://www.nextprot.org/db/entry/$id	NX_O00165	unknown		1	urn:miriam:nextprot	^NX_\w+	
NIAEST	niaest		http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$id	J0705A10	unknown		1	urn:miriam:niaest	^\w\d{4}\w\d{2}(\-[35])?$	
NITE Biological Research Center Catalogue	nbrc		http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$id	00001234	unknown		1	urn:miriam:nbrc	^\d+$	
NONCODE v3	noncodev3		http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$id	377550	unknown		1	urn:miriam:noncodev3	^\d+$	
NONCODE v4 Gene	noncodev4.gene		http://www.noncode.org/show_gene.php?id=$id	NONHSAG00001	unknown		1	urn:miriam:noncodev4.gene	^NONHSAG\d{5}$	
NONCODE v4 Transcript	noncodev4.rna		http://www.noncode.org/show_rna.php?id=$id	NONHSAT000001	unknown		1	urn:miriam:noncodev4.rna	^NONHSAT\d{6}$	
NORINE	norine		http://bioinfo.lifl.fr/norine/result.jsp?ID=$id	NOR00681	unknown		1	urn:miriam:norine	^NOR\d+$	
NucleaRDB	nuclearbd		http://www.receptors.org/nucleardb/proteins/$id	prgr_human	unknown		1	urn:miriam:nuclearbd	^\w+\_\w+$	
NuGO wiki	Nw	http://wiki.nugo.org	http://wiki.nugo.org/index.php/$id	HMDB00001	metabolite		0			NuGO wiki
Odor Molecules DataBase	odor		http://senselab.med.yale.edu/OdorDB/eavData.aspx?o=$id	74	unknown		1	urn:miriam:odor	^\d+$	
Olfactory Receptor Database	ordb		http://senselab.med.yale.edu/OrDB/eavData.aspx?o=$id	8497	unknown		1	urn:miriam:ordb	^\d+$	
OMA Group	oma.grp		http://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$id	LCSCCPN	unknown		1	urn:miriam:oma.grp	^[A-Z]+$	
OMA Protein	oma.protein		http://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$id	HUMAN16963	unknown		1	urn:miriam:oma.protein	^[A-Z0-9]{5}\d+$	
OMIA	omia		http://omia.angis.org.au/$id/	1000	unknown		1	urn:miriam:omia	^\d+$	
OMIM	Om	http://omim.org/	http://omim.org/entry/$id	603903	gene		1	urn:miriam:mim	^[*#+%^]?\d{6}$	OMIM
Ontology for Biomedical Investigations	obi		http://purl.bioontology.org/ontology/OBI/obo:$id	OBI_0000225	unknown		1	urn:miriam:obi	^OBI_\d{7}$	
Ontology of Physics for Biology	opb		http://purl.bioontology.org/ontology/OPB/$id	OPB_00573	unknown		1	urn:miriam:opb	^OPB_\d+$	
OPM	opm		http://opm.phar.umich.edu/protein.php?pdbid=$id	1h68	unknown		1	urn:miriam:opm	^[0-9][A-Za-z0-9]{3}$	
OPS Chemical Registry Service	OPS-CRS	http://www.rsc.org/	http://chemistry.openphacts.org/OPS$id	21009	unknown		1			
OPS Internal URIS for GVK	OPS-GVK		http://gvk.pharma.openphacts.com/targets/$id	t58221	unknown		1			
OPS Internal URIS for TGR	OPS-TGR		http://tgr.pharma.openphacts.com/target/$id	t2000005	unknown		1			
ORCID	orcid		https://orcid.org/$id	0000-0002-6309-7327	unknown		1	urn:miriam:orcid	^\d{4}-\d{4}-\d{4}-\d{3}(\d|X)$	
OriDB Saccharomyces	oridb.sacch		http://cerevisiae.oridb.org/details.php?id=$id	1	unknown		1	urn:miriam:oridb.sacch	^\d+$	
OriDB Schizosaccharomyces	oridb.schizo		http://pombe.oridb.org/details.php?id=$id	1	unknown		1	urn:miriam:oridb.schizo	^\d+$	
Orphanet	orphanet		http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=$id	85163	unknown		1	urn:miriam:orphanet	^\d+$	
OrthoDB	orthodb		http://cegg.unige.ch/orthodb/results?searchtext=$id	Q9P0K8	unknown		1	urn:miriam:orthodb	^\w+$	
Oryza Tag Line	otl		http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$id	AADB12	unknown		1	urn:miriam:otl	^A[A-Z]+\d+$	
Oryzabase	Ob	http://www.shigen.nig.ac.jp/rice/oryzabase	http://www.shigen.nig.ac.jp/rice/oryzabase/gateway/gatewayAction.do?target=symbol&id=$id	468	gene	Oryza sativa	1			Oryzabase
Oryzabase Gene	oryzabase.gene		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$id	117	unknown		1	urn:miriam:oryzabase.gene	^\d+$	
Oryzabase Mutant	oryzabase.mutant		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$id	21393	unknown		1	urn:miriam:oryzabase.mutant	^\d+$	
Oryzabase Stage	oryzabase.stage		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$id	34	unknown		1	urn:miriam:oryzabase.stage	^\d+$	
Oryzabase Strain	oryzabase.strain		http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$id	1	unknown		1	urn:miriam:oryzabase.strain	^\d+$	
Other	O				gene		1			Other
P3DB Protein	p3db.protein		http://www.p3db.org/protein.php?id=$id&amp%3Bref=0	70	unknown		1	urn:miriam:p3db.protein	^\d+$	
P3DB Site	p3db.site		http://www.p3db.org/phosphosite.php?id=$id&ref=0	65	unknown		1	urn:miriam:p3db.site	^\d+$	
PaleoDB	paleodb		http://paleodb.geology.wisc.edu/cgi-bin/bridge.pl?a=basicTaxonInfo&taxon_no=$id	83088	unknown		1	urn:miriam:paleodb	^\d+$	
PANTHER Family	panther.family		http://www.pantherdb.org/panther/family.do?clsAccession=$id	PTHR12345	unknown		1	urn:miriam:panther.family	^PTHR\d{5}(\:SF\d{1,3})?$	
PANTHER Node	panther.node		http://www.pantree.org/node/annotationNode.jsp?id=$id	PTN000000026	unknown		1	urn:miriam:panther.node	^PTN\d{9}$	
PANTHER Pathway	panther.pathway		http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=$id	P00024	unknown		1	urn:miriam:panther.pathway	^P\d{5}$	
PANTHER Pathway Component	panther.pthcmp		http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$id	P00266	unknown		1	urn:miriam:panther.pthcmp	^G|P|U|C|S\d{5}$	
PASS2	pass2		http://caps.ncbs.res.in/pass2/superfamily/superfamilydetail.php?superfamilyId=$id	46977	unknown		1	urn:miriam:pass2	^\d+$	
Pathway Commons	Pc	http://www.pathwaycommons.org/pc/	http://www.pathwaycommons.org/pc/record2.do?id=$id	485991	pathway		1	urn:miriam:pathwaycommons	^\d+$	Pathway Commons
Pathway Ontology	PW	http://rgd.mcw.edu/rgdweb/ontology/search.html	http://purl.bioontology.org/ontology/PW/$id	PW:0000208	pathway		1	urn:miriam:pw	^PW:\d{7}$	
PATO	pato		http://www.ebi.ac.uk/ontology-lookup/?termId=$id	PATO:0001998	unknown		1	urn:miriam:pato	^PATO:\d{7}$	
PaxDb Organism	paxdb.organism		http://pax-db.org/#!species/$id	9606	unknown		1	urn:miriam:paxdb.organism	^\d+$	
PaxDb Protein	paxdb.protein		http://pax-db.org/#!protein/$id	977869	unknown		1	urn:miriam:paxdb.protein	^\d+$	
Pazar Transcription Factor	pazar		http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$id	TF0001053	unknown		1	urn:miriam:pazar	^TF\w+$	
PDB	Pd	http://www.pdb.org/	http://www.rcsb.org/pdb/explore/explore.do?structureId=$id	2gc4	protein		1	urn:miriam:pdb	^[0-9][A-Za-z0-9]{3}$	Protein Data Bank
PeptideAtlas	peptideatlas		https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$id	PAp00000009	unknown		1	urn:miriam:peptideatlas	^PAp[0-9]{8}$	
Peroxibase	peroxibase		http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=$id	5282	unknown		1	urn:miriam:peroxibase	^\d+$	
Pfam	Pf	https://pfam.xfam.org/	https://pfam.xfam.org/family/$id/	PF01234	protein		1	urn:miriam:pfam	^PF\d{5}$	Pfam
PharmGKB Disease	pharmgkb.disease		http://www.pharmgkb.org/disease/$id	PA447218	unknown		1	urn:miriam:pharmgkb.disease	^PA\d+$	
PharmGKB Drug	Pgd	http://www.pharmgkb.org/	http://www.pharmgkb.org/drug/$id	PA448710	metabolite		1	urn:miriam:pharmgkb.drug	^PA\d+$	PharmGKB Drug
PharmGKB Gene	Pgg	http://www.pharmgkb.org/	http://www.pharmgkb.org/gene/$id	PA131	gene		1	urn:miriam:pharmgkb.gene	^PA\w+$	PharmGKB Gene
PharmGKB Pathways	Pgp	http://www.pharmgkb.org/	http://www.pharmgkb.org/pathway/$id	PA146123006	pathway		1	urn:miriam:pharmgkb.pathways	^PA\d+$	PharmGKB Pathways
Phenol-Explorer	phenolexplorer		http://www.phenol-explorer.eu/contents/food/$id	75	unknown		1	urn:miriam:phenolexplorer	^\d+$	
PhosphoPoint Kinase	phosphopoint.kinase		http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$id&drawing=0&sorting=0&kinome=1	AURKA	unknown		1	urn:miriam:phosphopoint.kinase	^\w+$	
PhosphoPoint Phosphoprotein	phosphopoint.protein		http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$id&drawing=0&sorting=0&kinome=0	AURKA	unknown		1	urn:miriam:phosphopoint.protein	^\w+$	
PhosphoSite Protein	Pp	http://www.phosphosite.org/homeAction.do	http://www.phosphosite.org/proteinAction.do?id=$id	12300	protein		1	urn:miriam:phosphosite.protein	^\d{5}$	PhosphoSite Protein
PhosphoSite Residue	phosphosite.residue		http://www.phosphosite.org/siteAction.do?id=$id	2842	unknown		1	urn:miriam:phosphosite.residue	^\d+$	
PhylomeDB	phylomedb		http://phylomedb.org/?seqid=$id	Phy000CLXM_RAT	unknown		1	urn:miriam:phylomedb	^\w+$	
Phytozome Locus	phytozome.locus		http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname%3A$id	Glyma0021s00410	unknown		1	urn:miriam:phytozome.locus	^[A-Za-z0-9]+$	
PINA	Pi	http://cbg.garvan.unsw.edu.au/pina/	http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?ac=$id&showExtend=null	Q13485	interaction		1	urn:miriam:pina	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	PINA
PiroplasmaDB	piroplasma		http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id	TA14985	unknown		1	urn:miriam:piroplasma	^TA\d+$	
PIRSF	pirsf		http://pir.georgetown.edu/cgi-bin/ipcSF?id=$id	PIRSF000100	unknown		1	urn:miriam:pirsf	^PIRSF\d{6}$	
Plant Genome Network	pgn		http://pgn.cornell.edu/unigene/unigene_assembly_contigs.pl?unigene_id=$id	196828	unknown		1	urn:miriam:pgn	^\d+$	
Plant Ontology	po		http://purl.bioontology.org/ontology/PO/$id	PO:0009089	unknown		1	urn:miriam:po	^PO\:\d+$	
PlantGDB	Pl	http://www.plantgdb.org/		PUT-157a-Vitis_vinifera-37378	gene		1		PUT-[\w\d-]+	PlantGDB
PlasmoDB	plasmodb		http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id	PF11_0344	unknown		1	urn:miriam:plasmodb	^\w+$	
PMP	pmp		http://www.proteinmodelportal.org/query/uniprot/$id	Q0VCA6	unknown		1	urn:miriam:pmp	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	
Pocketome	pocketome		http://www.pocketome.org/files/$id.html	1433C_TOBAC_1_252	unknown		1	urn:miriam:pocketome	^[A-Za-z_0-9]+	
PolBase	polbase		http://polbase.neb.com/polymerases/$id#sequences	19-T4	unknown		1	urn:miriam:polbase	^[A-Za-z-0-9]+$	
PomBase	pombase		http://www.pombase.org/spombe/result/$id	SPCC13B11.01	unknown		1	urn:miriam:pombase	^S\w+(\.)?\w+(\.)?$	
PRIDE	pride		http://www.ebi.ac.uk/pride/experimentLink.do?experimentAccessionNumber=$id	1	unknown		1	urn:miriam:pride	^\d+$	
ProDom	prodom		http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$id	PD10000	unknown		1	urn:miriam:prodom	^PD\d+$	
ProGlycProt	proglyc		http://www.proglycprot.org/detail.aspx?ProId=$id	AC119	unknown		1	urn:miriam:proglyc	^[A-Z]C\d{1,3}$	
PROSITE	prosite		http://prosite.expasy.org/$id	PS00001	unknown		1	urn:miriam:prosite	^PS\d{5}$	
ProtClustDB	protclustdb		http://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=$id	O80725	unknown		1	urn:miriam:protclustdb	^\w+$	
Protein Data Bank Ligand	pdb.ligand		http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=$id	TRQ	unknown		1	urn:miriam:pdb.ligand	^[A-Za-z0-9]+$	
Protein Model Database	pmdb		http://mi.caspur.it/PMDB/user/search.php?idsearch=$id	PM0012345	unknown		1	urn:miriam:pmdb	^PM\d{7}	
Protein Modification Ontology	psimod		http://www.ebi.ac.uk/ontology-lookup/?termId=$id	MOD:00001	unknown		1	urn:miriam:psimod	^MOD:\d{5}	
Protein Ontology	pr		http://pir.georgetown.edu/cgi-bin/pro/entry_pro?id=$id	PR:000000024	unknown		1	urn:miriam:pr	^PR\:\d+$	
ProtoNet Cluster	protonet.cluster		http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$id	4349895	unknown		1	urn:miriam:protonet.cluster	^\d+$	
ProtoNet ProteinCard	protonet.proteincard		http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$id	16941567	unknown		1	urn:miriam:protonet.proteincard	^\d+$	
PSCDB	pscdb		http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$id.html	051	unknown		1	urn:miriam:pscdb	^\d+$	
Pseudomonas Genome Database	pseudomonas		http://www.pseudomonas.com/getAnnotation.do?locusID=$id	PSEEN0001	unknown		1	urn:miriam:pseudomonas	^P\w+$	
PubChem	Cp	http://pubchem.ncbi.nlm.nih.gov/		100101	metabolite		1			
PubChem-bioassay	Cpb	http://www.ncbi.nlm.nih.gov/sites/entrez?db=pcassay 	http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=$id	1018	metabolite		1	urn:miriam:pubchem.bioassay	^\d+$	PubChem-bioassay
PubChem-compound	Cpc	http://pubchem.ncbi.nlm.nih.gov/	http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=$id	100101	metabolite		1	urn:miriam:pubchem.compound	^\d+$	PubChem-compound
PubChem-substance	Cps	http://pubchem.ncbi.nlm.nih.gov/	http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=$id	100101	metabolite		1	urn:miriam:pubchem.substance	^\d+$	PubChem-substance
PubMed	pubmed	http://www.ncbi.nlm.nih.gov/PubMed/	http://www.ncbi.nlm.nih.gov/pubmed/$id	16333295	publication		1	urn:miriam:pubmed	^\d+$	
PubMed Central	pmc		http://europepmc.org/articles/$id	PMC3084216	unknown		1	urn:miriam:pmc	PMC\d+	
Rat Genome Database qTL	rgd.qtl		http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$id	1354581	unknown		1	urn:miriam:rgd.qtl	^\d+$	
Rat Genome Database strain	rgd.strain		http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$id	5688061	unknown		1	urn:miriam:rgd.strain	^\d+$	
Reactome	Re	http://www.reactome.org/	http://www.reactome.org/cgi-bin/eventbrowser_st_id?FROM_REACTOME=1&ST_ID=$id	REACT_1590	pathway		1	urn:miriam:reactome	^REACT_\d+(\.\d+)?$	Reactome
REBASE	rebase		http://rebase.neb.com/rebase/enz/$id.html	101	unknown		1	urn:miriam:rebase	^\d+$	
RefSeq	Q	http://www.ncbi.nlm.nih.gov/projects/RefSeq/	http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$id	NP_012345	gene		1	urn:miriam:refseq	^((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\d+|(NZ\_[A-Z]{4}\d+))(\.\d+)?$	RefSeq
Relation Ontology	ro		http://www.obofoundry.org/ro/#$id	OBO_REL:is_a	unknown		1	urn:miriam:ro	^OBO_REL:\w+$	
RESID	Res	http://www.ebi.ac.uk/RESID/	http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-id+6JSUg1NA6u4+-e+[RESID:'$id']	AA0001	protein		1	urn:miriam:resid	^AA\d{4}$	RESID
Rfam	Rf		http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?$id	RF00066	gene		1	urn:miriam:rfam	^RF\d+$	RFAM
RGD	R	http://rgd.mcw.edu/	http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$id	2018	gene	Rattus norvegicus	1	urn:miriam:rgd	^\d{4,7}$	Rat Genome Database
Rhea	Rh	http://www.ebi.ac.uk/rhea/	http://www.ebi.ac.uk/rhea/reaction.xhtml?id=$id	12345	interaction		1	urn:miriam:rhea	^\d{5}$	Rhea
Rice Ensembl Gene	Os	http://www.gramene.org/Oryza_sativa	http://www.gramene.org/Oryza_sativa/geneview?gene=$id	LOC_Os04g54800	gene	Oryza sativa	1			Rice Ensembl Gene
Rice Genome Annotation Project	ricegap		http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?orf=$id	LOC_Os02g13300	unknown		1	urn:miriam:ricegap	^LOC\_Os\d{1,2}g\d{5}$	
RNA Modification Database	rnamods		http://mods.rna.albany.edu/mods/modifications/view/$id	101	unknown		1	urn:miriam:rnamods	^\d{3}$	
Rouge	rouge		http://www.kazusa.or.jp/rouge/gfpage/$id/	mKIAA4200	unknown		1	urn:miriam:rouge	^m\w+$	
SABIO-RK EC Record	sabiork.ec		http://sabiork.h-its.org/newSearch?q=ecnumber%3A$id	2.7.1.1	unknown		1	urn:miriam:sabiork.ec	^((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$	
SABIO-RK Kinetic Record	sabiork.kineticrecord		http://sabiork.h-its.org/newSearch?q=entryid%3A$id	5046	unknown		1	urn:miriam:sabiork.kineticrecord	^\d+$	
SABIO-RK Reaction	sabiork.reaction		http://sabiork.h-its.org/newSearch?q=sabioreactionid%3A$id	75	unknown		1	urn:miriam:sabiork.reaction	^\d+$	
Saccharomyces genome database pathways	sgd.pathways		http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$id	PWY3O-214	unknown		1	urn:miriam:sgd.pathways	^PWY\w{2}\-\d{3}$	
ScerTF	scretf		http://stormo.wustl.edu/ScerTF/details/$id/	RSC3	unknown		1	urn:miriam:scretf	^\w+$	
Science Signaling Pathway	sciencesignaling.path		http://stke.sciencemag.org/cgi/cm/stkecm;$id	CMP_18019	unknown		1	urn:miriam:sciencesignaling.path	^CMP_\d+$	
Science Signaling Pathway-Dependent Component	sciencesignaling.pdc		http://stke.sciencemag.org/cgi/cm/stkecm;$id	CMN_15494	unknown		1	urn:miriam:sciencesignaling.pdc	^CMN_\d+$	
Science Signaling Pathway-Independent Component	sciencesignaling.pic		http://stke.sciencemag.org/cgi/cm/stkecm;$id	CMC_15493	unknown		1	urn:miriam:sciencesignaling.pic	^CMC_\d+$	
SCOP	scop		http://scop.bic.nus.edu.sg/search.cgi?sunid=$id	47419	unknown		1	urn:miriam:scop	^\d+$	
Sequence Ontology	so		http://purl.bioontology.org/ontology/SO/$id	SO:0000704	unknown		1	urn:miriam:so	^SO:\d{7}$	
Sequence Read Archive	insdc.sra		http://trace.ddbj.nig.ac.jp/DRASearch/experiment?acc=$id	SRX000007	unknown		1	urn:miriam:insdc.sra	^[SED]R[APRSXZ]\d{6}	
SGD	D	http://www.yeastgenome.org/	http://www.yeastgenome.org/locus/$id	S000028457	gene	Saccharomyces cerevisiae	1	urn:miriam:sgd	^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$	SGD
SIDER Drug	sider.drug		http://sideeffects.embl.de/drugs/$id/	2244	unknown		1	urn:miriam:sider.drug	^\d+$	
SIDER Side Effect	sider.effect		http://sideeffects.embl.de/se/$id/	C0017565	unknown		1	urn:miriam:sider.effect	^C\d+$	
Signaling Gateway	signaling-gateway		http://www.signaling-gateway.org/molecule/query?afcsid=$id	A001094	unknown		1	urn:miriam:signaling-gateway	A\d{6}$	
SitEx	sitex		http://www-bionet.sscc.ru/sitex/index.php?siteid=$id	1000	unknown		1	urn:miriam:sitex	^\d+$	
Small Molecule Pathway Database	Sm	http://www.smpdb.ca/pathways	http://pathman.smpdb.ca/pathways/$id/pathway	SMP00001	pathway		1	urn:miriam:smpdb	^SMP\d{5}$	Small Molecule Pathway Database
SMART	Sma	http://smart.embl-heidelberg.de/	http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$id	SM00015	protein		1	urn:miriam:smart	^SM\d{5}$	SMART
SNOMED CT	snomedct		http://vtsl.vetmed.vt.edu/TerminologyMgt/Browser/ISA.cfm?SCT_ConceptID=$id	284196006	unknown		1	urn:miriam:snomedct	^(\w+)?\d+$	
Sol Genomics Network	sgn		http://solgenomics.net/phenome/locus_display.pl?locus_id=$id	0001	unknown		1	urn:miriam:sgn	^\d+$	
SoyBase	soybase		http://soybeanbreederstoolbox.org/search/search_results.php?category=SNP&search_term=$id	BARC-013845-01256	unknown		1	urn:miriam:soybase	^\w+(\-)?\w+(\-)?\w+$	
Spectral Database for Organic Compounds	sdbs		http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=$id	4544	unknown		1	urn:miriam:sdbs	\d+$	
SPIKE	Sk	http://www.cs.tau.ac.il/~spike/	http://www.cs.tau.ac.il/~spike/maps/$id.html	spike00001	interaction		1	urn:miriam:spike.map	^spike\d{5}$	SPIKE Map
SPRINT	Spr	http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/	http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$id&display_opts=Prints&category=None&queryform=false&regexpr=off	PR00001	protein		1	urn:miriam:sprint	^PR\d{5}$	SPRINT
STAP	stap		http://psb.kobic.re.kr/STAP/refinement/result.php?search=$id	1a24	unknown		1	urn:miriam:stap	^[0-9][A-Za-z0-9]{3}$	
STITCH	stitch		http://stitch.embl.de/interactions/$id	ICXJVZHDZFXYQC	unknown		1	urn:miriam:stitch	^\w{14}$	
STRING	Str	http://string.embl.de/	http://string.embl.de/interactions/$id	P53350	protein		1	urn:miriam:string	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$	STRING
SubstrateDB	Sdb	http://substrate.burnham.org/	http://substrate.burnham.org/protein/annotation/$id/html	1915	protein		0	urn:miriam:pmap.substratedb	^\d+$	SubstrateDB
SubtiList	subtilist		http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$id	BG11523	unknown		1	urn:miriam:subtilist	^BG\d+$	
SubtiWiki	Bsu	http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page	http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$id	BSU29180	gene	Bacillus subtilis	1	urn:miriam:subtiwiki	^BSU\d{5}$	SubtiWiki
SUPFAM	Sf	http://supfam.org/SUPERFAMILY/	http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$id	SSF57615	protein		1	urn:miriam:supfam	^\w+$	SUPFAM
SWISS-MODEL	Sw	http://swissmodel.expasy.org/	http://swissmodel.expasy.org/repository/smr.php?sptr_ac=$id	P23298	protein		1	urn:miriam:swiss-model	^\w+$	SWISS-MODEL
Systems Biology Ontology	Sbo	http://www.ebi.ac.uk/sbo/	http://www.ebi.ac.uk/sbo/main/$id	SBO:0000262	ontology		1	urn:miriam:biomodels.sbo	^SBO:\d{7}$	Systems Biology Ontology
T3DB	t3db		http://www.t3db.org/toxins/$id	T3D0001	unknown		1	urn:miriam:t3db	^T3D\d+$	
TAIR	A	http://arabidopsis.org/index.jsp	http://arabidopsis.org/servlets/TairObject?type=locus&name=$id	AT1G01030	gene		1	urn:miriam:tair.locus	^AT[1-5]G\d{5}$	TAIR Locus
TAIR Gene	tair.gene		http://arabidopsis.org/servlets/TairObject?accession=$id	Gene:2200934	unknown		1	urn:miriam:tair.gene	^Gene:\d{7}$	
TAIR Protein	tair.protein		http://arabidopsis.org/servlets/TairObject?accession=$id	AASequence:1009107926	unknown		1	urn:miriam:tair.protein	^AASequence:\d{10}$	
TarBase	tarbase		http://diana.cslab.ece.ntua.gr/DianaToolsNew/index.php?r=tarbase%2Findex&mirnas=$id	hsa-let-7	unknown		1	urn:miriam:tarbase	^\w+\-\w+\-\w+	
Taxonomy	taxonomy		http://purl.bioontology.org/ontology/NCBITAXON/obo:NCBITaxon_$id	9606	unknown		1	urn:miriam:taxonomy	^\d+$	
TEDDY	biomodels.teddy		http://purl.bioontology.org/ontology/TEDDY/$id	TEDDY_0000066	unknown		1	urn:miriam:biomodels.teddy	^TEDDY_\d{7}$	
Tetrahymena Genome Database	tgd		http://ciliate.org/index.php/feature/details/$id	TTHERM_00648910	unknown		1	urn:miriam:tgd	^TTHERM\_\d+$	
TIGR	Ti	http://www.jcvi.org/		12012.t00308	gene		1			TIGR
TIGRFAMS	tigrfam		http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc=$id	TIGR00010	unknown		1	urn:miriam:tigrfam	^TIGR\d+$	
Tissue List	tissuelist		http://www.uniprot.org/tissues/$id	TS-0285	unknown		1	urn:miriam:tissuelist	^TS-\d{4}$	
TOPDB	topdb		http://topdb.enzim.hu/?m=show&id=$id	AP00378	unknown		1	urn:miriam:topdb	^[A-Z0-9]+$	
TopFind	topfind		http://clipserve.clip.ubc.ca/topfind/proteins/$id	Q9UKQ2	unknown		1	urn:miriam:topfind	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$	
ToxoDB	toxoplasma		http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id	TGME49_053730	unknown		1	urn:miriam:toxoplasma	^\w+$	
Transport Classification Database	tcdb		http://www.tcdb.org/search/result.php?tc=$id	5.A.1.1.1	unknown		1	urn:miriam:tcdb	^\d+\.[A-Z]\.\d+\.\d+\.\d+$	
Tree of Life	tol		http://tolweb.org/$id	98034	unknown		1	urn:miriam:tol	^\d+$	
TreeBASE	treebase		http://purl.org/phylo/treebase/phylows/study/$id?format=html	TB2:S1000	unknown		1	urn:miriam:treebase	^TB[1,2]?:[A-Z][a-z]?\d+$	
TreeFam	treefam		http://www.treefam.org/family/$id	TF101014	unknown		1	urn:miriam:treefam	^\w{1,2}\d+$	
TrichDB	trichdb		http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id	TVAG_386080	unknown		1	urn:miriam:trichdb	^\w+$	
TriTrypDB	tritrypdb		http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id	Tb927.8.620	unknown		1	urn:miriam:tritrypdb	^\w+(\.)?\w+(\.)?\w+	
TTD Drug	Td	http://bidd.nus.edu.sg/group/cjttd/TTD_HOME.asp	http://bidd.nus.edu.sg/group/cjttd/ZFTTDDRUG.asp?ID=$id	DAP000773	metabolite		1	urn:miriam:ttd.drug	^DAP\d+$	TTD Drug
TTD Target	Tt	http://bidd.nus.edu.sg/group/cjttd/TTD_HOME.asp	http://bidd.nus.edu.sg/group/cjttd/ZFTTDDetail.asp?ID=$id	TTDS00056	protein		1	urn:miriam:ttd.target	^TTDS\d+$	TTD Target
TubercuList	Tb	http://tuberculist.epfl.ch	http://tuberculist.epfl.ch/quicksearch.php?gene+name=$id	Rv0064	gene	Mycobacterium tuberculosis	1	urn:miriam:myco.tuber	^Rv\d{4}(A|B|c)?$	TubercuList
UBERON	uberon		http://purl.bioontology.org/ontology/UBERON/$id	UBERON:0008203	unknown		1	urn:miriam:uberon	^UBERON\:\d+$	
uBio NameBank	ubio.namebank		http://www.ubio.org/browser/details.php?namebankID=$id	2555646	unknown		1	urn:miriam:ubio.namebank	^\d+$	
UCSC Genome Browser	Uc	http://genome.ucsc.edu/	http://genome.ucsc.edu/cgi-bin/hgTracks?position=$id	uc001tyh.1	gene		1		uc\d{3}[a-z]{3}\.\d	UCSC Genome Browser
UM-BBD Biotransformation Rule	umbbd.rule		http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$id	bt0001	unknown		1	urn:miriam:umbbd.rule	^bt\d+$	
UM-BBD Compound	umbbd.compound		http://umbbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$id	c0001	unknown		1	urn:miriam:umbbd.compound	^c\d+$	
UM-BBD Enzyme	umbbd.enzyme		http://umbbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$id	e0333	unknown		1	urn:miriam:umbbd.enzyme	^e\d+$	
UM-BBD Pathway	umbbd.pathway		http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=$id	ala	unknown		1	urn:miriam:umbbd.pathway	^\w+$	
UM-BBD Reaction	umbbd.reaction		http://umbbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$id	r0001	unknown		1	urn:miriam:umbbd.reaction	^r\d+$	
UniGene	U	http://www.ncbi.nlm.nih.gov/unigene	http://www.ncbi.nlm.nih.gov/unigene?term=$id	Hs.553708	gene		1		[A-Z][a-z][a-z]?\.\d+	UniGene
UniGene number	unigene	http://www.ncbi.nlm.nih.gov/unigene	http://www.ncbi.nlm.nih.gov/unigene?UGID=$id	1548618	gene		1	urn:miriam:unigene	^\d+$	
Unimod	unimod		http://www.unimod.org/modifications_view.php?editid1=$id	1200	unknown		1	urn:miriam:unimod	^\d+$	
UniParc	uniparc		http://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$id	UPI000000000A	unknown		1	urn:miriam:uniparc	^UPI[A-F0-9]{10}$	
Unipathway	Up	http://www.grenoble.prabi.fr/obiwarehouse/unipathway	http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$id	UPA00206	pathway		1	urn:miriam:unipathway	^UPA\d{5}$	Unipathway
Uniprot Enzyme	Enzyme		http://purl.uniprot.org/enzyme/$id		unknown		1			
UniProt Isoform	uniprot.isoform		http://www.uniprot.org/uniprot/$id	Q5BJF6-3	unknown		1	urn:miriam:uniprot.isoform	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\-\d+)$	
Uniprot-SwissProt	Sp	http://www.uniprot.org/	http://www.uniprot.org/uniprot/$id	CALM_HUMAN	protein		1		^[A-Z0-9]+_[A-Z]+$	UniProtKB/Swiss-Prot
Uniprot-TrEMBL	S	http://www.uniprot.org/	http://www.uniprot.org/uniprot/$id	P62158	protein		1	urn:miriam:uniprot	^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$	UniProtKB/TrEMBL
UniSTS	unists		http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$id	456789	unknown		1	urn:miriam:unists	^\d+$	
Unit Ontology	unit		http://purl.bioontology.org/ontology/UO/$id	UO:0000080	unknown		1	urn:miriam:unit	^UO:\d{7}?	
Unite	unite		http://unite.ut.ee/bl_forw.php?nimi=$id	UDB000691	unknown		1	urn:miriam:unite	^UDB\d{6}$	
VariO	vario		http://www.variationontology.org/cgi-bin/amivario/term-details.cgi?term=$id	VariO:0294	unknown		1	urn:miriam:vario	^VariO:\d+$	
Vbase2	vbase2		http://www.vbase2.org/vgene.php?id=$id	humIGHV025	unknown		1	urn:miriam:vbase2	^\w+$	
VBRC	vbrc		http://vbrc.org/gene_detail.asp?gene_id=$id	35742	unknown		1	urn:miriam:vbrc	^\d+$	
VectorBase	vectorbase		https://www.vectorbase.org/search/site/$id?site=Genome	ISCW007415	unknown		1	urn:miriam:vectorbase	^\D{4}\d{6}(\-\D{2})?$	
VFDB Gene	vfdb.gene		http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$id	VFG2154	unknown		1	urn:miriam:vfdb.gene	^\w+$	
VFDB Genus	vfdb.genus		http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$id	Chlamydia	unknown		1	urn:miriam:vfdb.genus	^\w+$	
ViPR Strain	vipr		http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$id&decorator=arena	BeAn 70563	unknown		1	urn:miriam:vipr	^[A-Za-z 0-9]+$	
ViralZone	viralzone		http://viralzone.expasy.org/all_by_protein/$id.html	992	unknown		1	urn:miriam:viralzone	^\d+$	
VIRsiRNA	virsirna		http://crdd.osdd.net/servers/virsirnadb/record.php?details=$id	virsi1909	unknown		1	urn:miriam:virsirna	^virsi\d+$	
VMH metabolite	VmhM		https://registry.identifiers.org:/registry/vmhmetabolite	http://identifiers.org/vmhmetabolite/$id	h2o	metabolite		1		urn:miriam:vmhmetabolite	^[a-zA-Z0-9_\(\_\)\[\]]+$	VMH Life_Metabolite
Wheat gene catalog	Wc	http://wheat.pw.usda.gov/	http://wheat.pw.usda.gov/sql?sql=select+distinct+genewgcreference.number+as+WGC,+reference.name+as+Reference,+reference.title+as+Title,+journal.name+as+Journal,+reference.volume+as+Volume,+reference.pages+as+Page+from+reference+inner+join+genewgcreference+on+genewgcreference.referenceid=reference.id+inner+join+journal+on+reference.journalid=journal.id+where+genewgcreference.number=$id	341	gene	Triticum aestivum	1			
Wheat gene names	Wn	http://wheat.pw.usda.gov/	http://wheat.pw.usda.gov/report?class=gene;name=$id	5S-Rrna-D1_(Triticum)	gene	Triticum aestivum	1			Wheat gene names
Wheat gene refs	Wr	http://wheat.pw.usda.gov/	http://wheat.pw.usda.gov/cgi-bin/graingenes/report.cgi?class=reference&name=$id	WGS-95-1333	probe	Triticum aestivum	0			Wheat gene refs
WikiGenes	Wg	http://www.wikigenes.org/	http://www.wikigenes.org/e/gene/e/$id.html	7157	gene		0	urn:miriam:wikigenes	^\d+$	WikiGenes
WikiPathways	Wp	http://www.wikipathways.org/	https://www.wikipathways.org/instance/$id	WP100	pathway		1	urn:miriam:wikipathways	WP\d{1,5}(\_r\d+)?$	WikiPathways
Wikipedia	Wi	http://www.wikipedia.org	https://en.wikipedia.org/wiki/$id	Acetate	metabolite		1	urn:miriam:wikipedia.en	^[A-Za-z-0-9_]+$	Wikipedia
Worfdb	worfdb		http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=$id	T01B6.1	unknown		1	urn:miriam:worfdb	^\w+(\.\d+)?	
WormBase	W	http://www.wormbase.org/	http://www.wormbase.org/db/gene/gene?name=$id;class=Gene	WBGene00000001	gene	Caenorhabditis elegans	1	urn:miriam:wb	^(WBGene\d{8}|([A-Z_a-z0-9]+(\.)?(t)?(\d+)?([a-z])?))$	WormBase
WormBase RNAi	wormbase.rnai		http://www.wormbase.org/species/c_elegans/rnai/$id	WBRNAi00086878	unknown		1	urn:miriam:wormbase.rnai	^WBRNAi\d{8}$	
Wormpep	wormpep		http://wormbase.sanger.ac.uk/db/seq/protein?name=WP%3A$id	CE28239	unknown		1	urn:miriam:wormpep	^CE\d{5}$	
Xenbase	xenbase		http://www.xenbase.org/gene/showgene.do?method=displayGeneSummary&geneId=$id	922462	unknown		1	urn:miriam:xenbase	^(XB-GENE-)?\d+$	
YDPM	ydpm		http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$id	YAL001C	unknown		1	urn:miriam:ydpm	^Y[A-Z]{2}\d+[CW]$	
Yeast Intron Database	yid		http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$id	SNR17A	unknown		1	urn:miriam:yid	^[A-Z0-9]+$	
YeTFasCo	yetfasco		http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$id	YOR172W_571.0	unknown		1	urn:miriam:yetfasco	^\w+\_\d+(\.\d+)?$	
YRC PDR	yrcpdr		http://yeastrc.org/pdr/viewProtein.do?id=$id	2673500	unknown		1	urn:miriam:yrcpdr	^\d+$	
ZFIN	Z	http://zfin.org	http://zfin.org/action/marker/view/$id	ZDB-GENE-041118-11	gene	Danio rerio	1	urn:miriam:zfin	ZDB\-GENE\-\d+\-\d+	ZFIN Gene
ZFIN Expression	zfin.expression		http://zfin.org/action/genotype/show_all_expression?genoID=$id	ZDB-GENO-980202-899	unknown		1	urn:miriam:zfin.expression	^ZDB\-GEN0\-\d+\-\d+$	
ZFIN Phenotype	zfin.phenotype		http://zfin.org/action/genotype/show_all_phenotype?zdbID=$id	ZDB-GENO-980202-899	unknown		1	urn:miriam:zfin.phenotype	^ZDB\-GEN0\-\d+\-\d+$	
