Package org.bridgedb.rdf

Class BridgeDBRdfHandler

java.lang.Object

org.bridgedb.rdf.RdfBase

org.bridgedb.rdf.BridgeDBRdfHandler

public class BridgeDBRdfHandler
extends RdfBase

Author:

Christian

Field Summary

Fields

Modifier and Type	Field	Description
static String	CONFIG_FILE_NAME

Fields inherited from class org.bridgedb.rdf.RdfBase

DEFAULT_BASE_URI, DEFAULT_FILE_FORMAT

Method Summary

Modifier and Type	Method	Description
protected static org.eclipse.rdf4j.model.Resource	asCodeMapperResource(org.bridgedb.DataSource dataSource)
protected static org.eclipse.rdf4j.model.Resource	asResource(org.bridgedb.DataSource dataSource)
static void	init()
static void	main(String[] args)
static void	parseRdfFile(File file)
static void	parseRdfInputStream(InputStream stream)
org.bridgedb.DataSource	readDataSource(org.eclipse.rdf4j.repository.RepositoryConnection repositoryConnection, org.eclipse.rdf4j.model.Resource dataSourceId)
static void	writeRdfToFile(File file)
static void	writeRdfToFile(File file, SortedSet<org.bridgedb.DataSource> dataSources)

Methods inherited from class org.bridgedb.rdf.RdfBase

getPossibleSingletonString, getSingletonString, shutDown

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CONFIG_FILE_NAME

public static final String CONFIG_FILE_NAME

See Also:

Constant Field Values

Method Detail

readDataSource

public org.bridgedb.DataSource readDataSource(org.eclipse.rdf4j.repository.RepositoryConnection repositoryConnection,
                                              org.eclipse.rdf4j.model.Resource dataSourceId)
                                       throws BridgeDBException,
                                              org.eclipse.rdf4j.repository.RepositoryException

Throws:

BridgeDBException

org.eclipse.rdf4j.repository.RepositoryException

parseRdfFile

public static void parseRdfFile(File file)
                         throws BridgeDBException

Throws:

BridgeDBException

parseRdfInputStream

public static void parseRdfInputStream(InputStream stream)
                                throws BridgeDBException

Throws:

BridgeDBException

main

public static void main(String[] args)
                 throws org.eclipse.rdf4j.repository.RepositoryException,
                        BridgeDBException,
                        IOException,
                        org.eclipse.rdf4j.rio.RDFParseException,
                        org.eclipse.rdf4j.rio.RDFHandlerException

Throws:

org.eclipse.rdf4j.repository.RepositoryException

BridgeDBException

IOException

org.eclipse.rdf4j.rio.RDFParseException

org.eclipse.rdf4j.rio.RDFHandlerException

init

public static void init()
                 throws BridgeDBException

Throws:

BridgeDBException

writeRdfToFile

public static void writeRdfToFile(File file)
                           throws BridgeDBException

Throws:

BridgeDBException

writeRdfToFile

public static void writeRdfToFile(File file,
                                  SortedSet<org.bridgedb.DataSource> dataSources)
                           throws BridgeDBException

Throws:

BridgeDBException

asResource

protected static org.eclipse.rdf4j.model.Resource asResource(org.bridgedb.DataSource dataSource)

asCodeMapperResource

protected static org.eclipse.rdf4j.model.Resource asCodeMapperResource(org.bridgedb.DataSource dataSource)