Constant Field Values

Contents

• org.bridgedb.*

org.bridgedb.*

org.bridgedb.rdf.BridgeDBRdfHandler

Modifier and Type	Constant Field	Value
public static final String	CONFIG_FILE_NAME	"DataSource.ttl"

org.bridgedb.rdf.BridgeDbRdfTools

Modifier and Type	Constant Field	Value
public static final String	DEFAULT_FORMAT	"TriX"

org.bridgedb.rdf.constants.BridgeDBConstants

Modifier and Type	Constant Field	Value
public static final String	ABOUT_ORGANISM_LABEL	"aboutOrganism"
public static final String	ABOUT_ORGANISM1	"http://vocabularies.bridgedb.org/ops#Organism"
public static final String	CODE_MAPPER1	"http://vocabularies.bridgedb.org/ops#CodeMapper"
public static final String	DATA_SOURCE_LABEL	"DataSource"
public static final String	DATA_SOURCE1	"http://vocabularies.bridgedb.org/ops#DataSource"
public static final String	OLD_PREFIX	"http://openphacts.cs.man.ac.uk:9090/ontology/DataSource.owl#"
public static final String	OLD_PREFIX_NAME	"bridgeDB"
public static final String	ORGANISM_LABEL	"Organism"
public static final String	ORGANISM1	"http://vocabularies.bridgedb.org/ops#Organism"
public static final String	PREFIX	"http://vocabularies.bridgedb.org/ops#"
public static final String	PREFIX_NAME	"bdb"
public static final String	TRANSITIVE	"http://vocabularies.bridgedb.org/ops#Transitive"
public static final String	URI_PATTERN_LABEL	"UriPattern"
public static final String	URI_PATTERN1	"http://vocabularies.bridgedb.org/ops#UriPattern"
public static final String	VARIOUS	"http://vocabularies.bridgedb.org/ops#various"

org.bridgedb.rdf.constants.ChemInf

Modifier and Type	Constant Field	Value
public static final String	CHEMICAL_ENTITY	"http://semanticscience.org/resource/SIO_010004"
public static final String	DATABASE_CROSS_REFERENCE	"http://semanticscience.org/resource/SIO_001171"
public static final String	FUNCTIONAL_RNA_CODING_GENE	"http://semanticscience.org/resource/SIO_000986"
public static final String	GENE	"http://semanticscience.org/resource/SIO_010035"
public static final String	hasChemAxonCanonicalisedTautomer	"http://semanticscience.org/resource/CHEMINF_000499"
public static final String	hasComponentWithUnchargedCounterpart	"http://semanticscience.org/resource/CHEMINF_000480"
public static final String	hasIsotopicallyUnspecifiedParent	"http://semanticscience.org/resource/CHEMINF_000459"
public static final String	hasMajorTautomerAtpH7point4	"http://semanticscience.org/resource/CHEMINF_000486"
public static final String	hasOPSNormalizedCounterpart	"http://semanticscience.org/resource/CHEMINF_000458"
public static final String	hasStereoundefinedParent	"http://semanticscience.org/resource/CHEMINF_000456"
public static final String	hasUnchargedCounterpart	"http://semanticscience.org/resource/CHEMINF_000460"
public static final String	INCHI_KEY	"http://semanticscience.org/resource/CHEMINF_000059"
public static final String	isChemAxonCanonicalisedTtautomerOf	"http://semanticscience.org/resource/CHEMINF_000514"
public static final String	isComponentWithUnchargedCounterpartOf	"http://semanticscience.org/resource/CHEMINF_000492"
public static final String	isCounterpartWithDifferentChargeOf	"http://semanticscience.org/resource/CHEMINF_000497"
public static final String	isIsotopicallyUnspecifiedParentOf	"http://semanticscience.org/resource/CHEMINF_000489"
public static final String	isIsotopologueOf	"http://semanticscience.org/resource/CHEMINF_000455"
public static final String	isOPSNormalizedCounterpartOf	"http://semanticscience.org/resource/CHEMINF_000494"
public static final String	isStereoisomerOf	"http://semanticscience.org/resource/CHEMINF_000461"
public static final String	isStereoundefinedParentOf	"http://semanticscience.org/resource/CHEMINF_000491"
public static final String	isUnchargedCounterpartOf	"http://semanticscience.org/resource/CHEMINF_000495"
public static final String	PATHWAY	"http://semanticscience.org/resource/SIO_001107"
public static final String	PROTEIN	"http://semanticscience.org/resource/SIO_010043"
public static final String	PROTEIN_CODING_GENE	"http://semanticscience.org/resource/SIO_000985"
public static final String	sharesOPSNormalizedParentWith	"http://semanticscience.org/resource/CHEMINF_000498"
public static final String	TARGET	"http://semanticscience.org/resource/SIO_010423"

org.bridgedb.rdf.constants.CitoConstants

Modifier and Type	Constant Field	Value
public static final String	CITE_AS_AUTHORITY	"citeAsAuthority"
public static final String	PREFIX_NAME	"cito"
public static final String	voidns	"http://purl.org/spar/cito/"

org.bridgedb.rdf.constants.DCatConstants

Modifier and Type	Constant Field	Value
public static final String	ACCESS_URL	"accessURL"
public static final String	BYTE_SIZE	"byteSize"
public static final String	DESCRIPTION	"description"
public static final String	DISTRIBUTION	"distribution"
public static final String	DOWNLOAD	"downloadURL"
public static final String	LANDING_PAGE	"landingPage"
public static final String	MEDIA_TYPE	"mediaType "
public static final String	PREFIX_NAME	"dcat"
public static final String	THEME	"theme"
public static final String	TITLE	"title"
public static final String	voidns	"http://www.w3.org/ns/dcat#"

org.bridgedb.rdf.constants.DCTermsConstants

Modifier and Type	Constant Field	Value
public static final String	ACCRUAL_PERIODICITY	"accrualPeriodicity"
public static final String	ALTERNATIVE	"alternative"
public static final String	DESCRIPTION	"description"
public static final String	ISSUED	"issued"
public static final String	LICENSE	"license"
public static final String	PREFIX_NAME	"dcterms"
public static final String	PUBLISHER	"publisher"
public static final String	TITLE	"title"
public static final String	voidns	"http://purl.org/dc/terms/"

org.bridgedb.rdf.constants.DulConstants

Modifier and Type	Constant Field	Value
public static final String	dulns	"http://www.ontologydesignpatterns.org/ont/dul/DUL.owl#"

org.bridgedb.rdf.constants.FoafConstants

Modifier and Type	Constant Field	Value
public static final String	PAGE	"citeAsAuthority"
public static final String	PREFIX_NAME	"foaf"
public static final String	PRIMARY_TOPIC	"primaryTopic"
public static final String	voidns	"http://xmlns.com/foaf/0.1/"

org.bridgedb.rdf.constants.IdenitifiersOrgConstants

Modifier and Type	Constant Field	Value
public static final String	NAMESPACE	"namespace"
public static final String	PREFIX_NAME	"idot:"
public static final String	REGEX	"idRegexPattern"
public static final String	voidns	"http://identifiers.org/terms#"

org.bridgedb.rdf.constants.OboConstants

Modifier and Type	Constant Field	Value
public static final String	HAS_FUNCTIONAL_PARENT	"http://purl.obolibrary.org/obo#has_functional_parent"
public static final String	HAS_PART	"http://purl.obolibrary.org/obo#has_part"
public static final String	IS_TAUTOMER_OF	"http://purl.obolibrary.org/obo#is_tautomer_of"
public static final String	PART_OF	"http://purl.obolibrary.org/obo#part_of"
public static final String	PREFIX	"http://purl.obolibrary.org/obo#"

org.bridgedb.rdf.constants.OWLConstants

Modifier and Type	Constant Field	Value
public static final String	EQUIVALENT_CLASS	"http://www.w3.org/2002/07/owl#equivalentClass"
public static final String	SAME_AS	"http://www.w3.org/2002/07/owl#sameAs"
public static final String	THING	"owl:Thing"

org.bridgedb.rdf.constants.RdfSchemaConstants

Modifier and Type	Constant Field	Value
public static final String	SEE_ALSO	"http://www.w3.org/2000/01/rdf-schema#seeAlso"

org.bridgedb.rdf.constants.SkosConstants

Modifier and Type	Constant Field	Value
public static final String	BROAD_MATCH	"http://www.w3.org/2004/02/skos/core#broadMatch"
public static final String	BROADER	"http://www.w3.org/2004/02/skos/core#broader"
public static final String	CLOSE_MATCH	"http://www.w3.org/2004/02/skos/core#closeMatch"
public static final String	EXACT_MATCH	"http://www.w3.org/2004/02/skos/core#exactMatch"
public static final String	MAPPING_RELATION	"http://www.w3.org/2004/02/skos/core#mappingRelation"
public static final String	NARROW_MATCH	"http://www.w3.org/2004/02/skos/core#narrowMatch"
public static final String	NARROWER	"http://www.w3.org/2004/02/skos/core#narrower"
public static final String	RELATED	"http://www.w3.org/2004/02/skos/core#related"
public static final String	RELATED_MATCH	"http://www.w3.org/2004/02/skos/core#relatedMatch"

org.bridgedb.rdf.constants.VoidConstants

Modifier and Type	Constant Field	Value
public static final String	PREFIX_NAME	"void:"
public static final String	URI_SPACE_SHORT	"void:uriSpace"
public static final String	voidns	"http://rdfs.org/ns/void#"

org.bridgedb.rdf.constants.XMLSchemaConstants

Modifier and Type	Constant Field	Value
public static final String	PREFIX	"http://www.w3.org/2001/XMLSchema#"

org.bridgedb.rdf.identifiers.org.IdentifersOrgReader

Modifier and Type	Constant Field	Value
public static final String	LOCAL_MIRAM_REGISTRY	"MiriamRegistry.ttl"
public static final String	MIRAM_REGISTRY_URI	"http://www.ebi.ac.uk/miriam/main/export/registry.ttl"
public static final String	UNABLE_TO_CONNECT	"Unable to connect to miriam"