Package org.bridgedb.rdf

Class OrganismRdf

java.lang.Object

org.bridgedb.rdf.RdfBase

org.bridgedb.rdf.OrganismRdf

public class OrganismRdf
extends RdfBase

Author:

Christian

Field Summary

Fields inherited from class org.bridgedb.rdf.RdfBase

DEFAULT_BASE_URI, DEFAULT_FILE_FORMAT

Method Summary

Modifier and Type	Method	Description
static void	add(org.eclipse.rdf4j.repository.RepositoryConnection repositoryConnection, Organism organism)
static void	addAll(org.eclipse.rdf4j.repository.RepositoryConnection repositoryConnection)
void	addComments(org.eclipse.rdf4j.rio.RDFHandler handler)
static OrganismRdf	factory()
static String	getRdfLabel(Organism organism)
static org.eclipse.rdf4j.model.IRI	getResourceId(Organism organism)
static Object	readRdf(org.eclipse.rdf4j.model.Resource organismId, Set<org.eclipse.rdf4j.model.Statement> allStatements)

Methods inherited from class org.bridgedb.rdf.RdfBase

getPossibleSingletonString, getSingletonString, shutDown

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

factory

public static OrganismRdf factory()

getRdfLabel

public static final String getRdfLabel(Organism organism)

getResourceId

public static final org.eclipse.rdf4j.model.IRI getResourceId(Organism organism)

addAll

public static void addAll(org.eclipse.rdf4j.repository.RepositoryConnection repositoryConnection)
                   throws IOException,
                          org.eclipse.rdf4j.repository.RepositoryException

Throws:

IOException

org.eclipse.rdf4j.repository.RepositoryException

addComments

public void addComments(org.eclipse.rdf4j.rio.RDFHandler handler)
                 throws org.eclipse.rdf4j.rio.RDFHandlerException

Throws:

org.eclipse.rdf4j.rio.RDFHandlerException

add

public static void add(org.eclipse.rdf4j.repository.RepositoryConnection repositoryConnection,
                       Organism organism)
                throws IOException,
                       org.eclipse.rdf4j.repository.RepositoryException

Throws:

IOException

org.eclipse.rdf4j.repository.RepositoryException

readRdf

public static Object readRdf(org.eclipse.rdf4j.model.Resource organismId,
                             Set<org.eclipse.rdf4j.model.Statement> allStatements)
                      throws BridgeDBException

Throws:

BridgeDBException