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BridgeQC - Class in org.bridgedb.tools.qc

Utility to do simple quality control on a BridgeDerby database.

BridgeQC(File, File) - Constructor for class org.bridgedb.tools.qc.BridgeQC

BridgeQC.PropertyChecker - Interface in org.bridgedb.tools.qc

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check(String, String) - Method in interface org.bridgedb.tools.qc.BridgeQC.PropertyChecker

checkDatabaseSanity() - Method in class org.bridgedb.tools.qc.BridgeQC

compareAttributes() - Method in class org.bridgedb.tools.qc.BridgeQC

compareDataSources() - Method in class org.bridgedb.tools.qc.BridgeQC

compareFileSizes() - Method in class org.bridgedb.tools.qc.BridgeQC

compareInfo() - Method in class org.bridgedb.tools.qc.BridgeQC

compareLinks() - Method in class org.bridgedb.tools.qc.BridgeQC

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initDatabases() - Method in class org.bridgedb.tools.qc.BridgeQC

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main(String[]) - Static method in class org.bridgedb.tools.qc.BridgeQC

main(String[]) - Static method in class org.bridgedb.tools.qc.PatternChecker

Script can be run in two ways 1) as part of BridgeQC, to check a single database.

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org.bridgedb.tools.qc - package org.bridgedb.tools.qc

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PatternChecker - Class in org.bridgedb.tools.qc

Script to check the Id's of one or more derby databases against the patterns registerd in BioDataSources.

PatternChecker() - Constructor for class org.bridgedb.tools.qc.PatternChecker

printUsage() - Static method in class org.bridgedb.tools.qc.BridgeQC

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run() - Method in class org.bridgedb.tools.qc.BridgeQC

run(File) - Method in class org.bridgedb.tools.qc.PatternChecker

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safeEquals(Object, Object) - Static method in class org.bridgedb.tools.qc.BridgeQC

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