org.bridgedb.tools.qc

Class PatternChecker

java.lang.Object

org.bridgedb.tools.qc.PatternChecker

public class PatternChecker
extends Object

Script to check the Id's of one or more derby databases against the patterns registerd in BioDataSources.

This will check all Id's against the patterns, count how many do not match, and print a few example id's that do not match.

Not to be confused with the BridgeQC script, which really compares the contents of two databases.

Constructor Summary

Constructors

Constructor and Description
PatternChecker()

Method Summary

Modifier and Type	Method and Description
static void	main(String[] args) Script can be run in two ways 1) as part of BridgeQC, to check a single database.
void	run(File f)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PatternChecker

public PatternChecker()

Method Detail

run

public void run(File f)
         throws SQLException,
                IDMapperException

Throws:

SQLException

IDMapperException

main

public static void main(String[] args)
                 throws IDMapperException,
                        SQLException

Script can be run in two ways 1) as part of BridgeQC, to check a single database. Pass one argument with a derby database filename. 2) standalone, to check a set of databases. Specify each database on the command line separately.

Throws:

IDMapperException

SQLException