BridgeQC (BridgeDb QC Tools 3.0.25 API)

java.lang.Object
- org.bridgedb.tools.qc.BridgeQC

```
public class BridgeQC
extends Object
```
Utility to do simple quality control on a BridgeDerby database. Run with two parameters: [old database] and [new database] Some basic comparisons will be done, which serves as a sanity check that not suddenly a whole identifier system has gone missing.
The script produces a report on STDOUT (configurable), lines starting with "INFO" are strictly informative, whereas lines starting with "WARNING" are problems worth investigating further. Ideally there are no "WARNING" lines in the report.

Nested Class Summary

Nested Classes
Modifier and Type Class Description

static interface BridgeQC.PropertyChecker

Constructor Summary

Constructors
Constructor	Description
`BridgeQC(File f1, File f2)`	Compares two Derby databases and reports the output to STDOUT.
`BridgeQC(File f1, File f2, OutputStream out)`	Compares two Derby databases and reports the output to the given `OutputStream`.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`checkDatabaseSanity()`
`void`	`compareAttributes()`
`void`	`compareDataSources()`
`void`	`compareFileSizes()`
`void`	`compareInfo()`
`void`	`compareLinks()`
`void`	`initDatabases()`
`static void`	`main(String[] args)`
`static void`	`printUsage()`
`void`	`run()`
`static boolean`	`safeEquals(Object a, Object b)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- BridgeQC
```
public BridgeQC(File f1,
                File f2)
         throws IDMapperException
```
  Compares two Derby databases and reports the output to STDOUT.
  
  Parameters:
  
  f1 - the original Derby@prefix gpml: database
  
  f2 - the new Derby database
  
  Throws:
  
  IDMapperException
- BridgeQC
```
public BridgeQC(File f1,
                File f2,
                OutputStream out)
         throws IDMapperException
```
  Compares two Derby databases and reports the output to the given OutputStream.
  
  Parameters:
  
  f1 - the original Derby database
  
  f2 - the new Derby database
  
  Throws:
  
  IDMapperException

Method Detail

initDatabases

public void initDatabases()
                   throws IDMapperException

Throws:: IDMapperException

compareDataSources

public void compareDataSources()
                        throws IDMapperException

Throws:: IDMapperException

compareLinks

public void compareLinks()
                  throws SQLException

Throws:: SQLException

checkDatabaseSanity

public void checkDatabaseSanity()
                         throws SQLException

Throws:: SQLException

compareFileSizes

public void compareFileSizes()
                      throws SQLException

Throws:: SQLException

compareAttributes

public void compareAttributes()
                       throws IDMapperException

Throws:: IDMapperException

safeEquals

public static boolean safeEquals(Object a,
                                 Object b)

compareInfo
```
public void compareInfo()
```

run

public void run()
         throws IDMapperException,
                SQLException

Throws:: IDMapperException; SQLException

printUsage
```
public static void printUsage()
```

main

public static void main(String[] args)
                 throws IDMapperException,
                        SQLException

Parameters:: args -
Throws:: IDMapperException; SQLException