B C I M O P R S
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B

BridgeQC - Class in org.bridgedb.tools.qc

Utility to do simple quality control on a BridgeDerby database.

BridgeQC(File, File) - Constructor for class org.bridgedb.tools.qc.BridgeQC

Compares two Derby databases and reports the output to STDOUT.

BridgeQC(File, File, OutputStream) - Constructor for class org.bridgedb.tools.qc.BridgeQC

Compares two Derby databases and reports the output to the given OutputStream.

BridgeQC.PropertyChecker - Interface in org.bridgedb.tools.qc

C

check(String, String, PrintStream) - Method in interface org.bridgedb.tools.qc.BridgeQC.PropertyChecker

checkDatabaseSanity() - Method in class org.bridgedb.tools.qc.BridgeQC

compareAttributes() - Method in class org.bridgedb.tools.qc.BridgeQC

compareDataSources() - Method in class org.bridgedb.tools.qc.BridgeQC

compareFileSizes() - Method in class org.bridgedb.tools.qc.BridgeQC

compareInfo() - Method in class org.bridgedb.tools.qc.BridgeQC

compareLinks() - Method in class org.bridgedb.tools.qc.BridgeQC

I

initDatabases() - Method in class org.bridgedb.tools.qc.BridgeQC

M

main(String[]) - Static method in class org.bridgedb.tools.qc.BridgeQC

main(String[]) - Static method in class org.bridgedb.tools.qc.PatternChecker

Script can be run in two ways 1) as part of BridgeQC, to check a single database.

O

org.bridgedb.tools.qc - package org.bridgedb.tools.qc

P

PatternChecker - Class in org.bridgedb.tools.qc

Script to check the Id's of one or more derby databases against the patterns registerd in BioDataSources.

PatternChecker() - Constructor for class org.bridgedb.tools.qc.PatternChecker

printUsage() - Static method in class org.bridgedb.tools.qc.BridgeQC

R

run() - Method in class org.bridgedb.tools.qc.BridgeQC

run(File) - Method in class org.bridgedb.tools.qc.PatternChecker

S

safeEquals(Object, Object) - Static method in class org.bridgedb.tools.qc.BridgeQC

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