org.bridgedb.pairs

Class SyscodeBasedCodeMapper

java.lang.Object

org.bridgedb.pairs.SyscodeBasedCodeMapper

All Implemented Interfaces:

CodeMapper

public class SyscodeBasedCodeMapper
extends Object
implements CodeMapper

Basic code mapper which always uses xref.id and DataSource.systemCode

Author:

Christian

Constructor Summary

Constructors

Constructor and Description
SyscodeBasedCodeMapper()

Method Summary

Modifier and Type	Method and Description
IdSysCodePair	toIdSysCodePair(Xref xref) Creates an IdSysCodePair based on a xref.
Xref	toXref(IdSysCodePair pair) Creates a xref based on an IdSysCodePair Changes the ref.id and dataSource.systemCode if required.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SyscodeBasedCodeMapper

public SyscodeBasedCodeMapper()

Method Detail

toIdSysCodePair

public IdSysCodePair toIdSysCodePair(Xref xref)

Description copied from interface: CodeMapper

Creates an IdSysCodePair based on a xref. Changes the ref.id and dataSource.systemCode if required.

Specified by:

toIdSysCodePair in interface CodeMapper

Returns:

The pair used to represent this xref

toXref

public Xref toXref(IdSysCodePair pair)
            throws BridgeDBException

Description copied from interface: CodeMapper

Creates a xref based on an IdSysCodePair Changes the ref.id and dataSource.systemCode if required.

Specified by:

toXref in interface CodeMapper

Returns:

The xref used to represent this pair

Throws:

BridgeDBException - Normally thrown if the pair is invalid, incomplete or can not be converted to a valid xref. If the syscode does not convert to a valid DataSource