Uses of Package
org.bridgedb

Packages that use org.bridgedb

Package	Description
org.bridgedb	BridgeDb is a java library intended for dealing with identifiers for biological entities such as genes, proteins, metabolites.
org.bridgedb.file	Driver and helper classes for using simple files as an identifier mapping service.
org.bridgedb.impl
org.bridgedb.webservice

Classes in org.bridgedb used by org.bridgedb

Class	Description
AttributeMapper	AttributeMapper knows about attributes for Xrefs.
DataSource	Contains information about a certain DataSource.
DataSource.Builder	Uses builder pattern to set optional attributes for a DataSource.
Driver	A Driver knows how to create an IDMapper instance.
IDMapper	Base interface for all id mapping methods.
IDMapperCapabilities	Describes capabilities of an IDMapper.
IDMapperException	for all exceptions thrown by IDMapper interface.
Xref	Stores an id + DataSource combination, which represents an unique gene product.

Classes in org.bridgedb used by org.bridgedb.file

Class	Description
DataSource	Contains information about a certain DataSource.
IDMapper	Base interface for all id mapping methods.
IDMapperCapabilities	Describes capabilities of an IDMapper.
IDMapperException	for all exceptions thrown by IDMapper interface.
Xref	Stores an id + DataSource combination, which represents an unique gene product.

Classes in org.bridgedb used by org.bridgedb.impl

Class	Description
DataSource	Contains information about a certain DataSource.
IDMapper	Base interface for all id mapping methods.
IDMapperException	for all exceptions thrown by IDMapper interface.
Xref	Stores an id + DataSource combination, which represents an unique gene product.

Classes in org.bridgedb used by org.bridgedb.webservice

Class	Description
AbstractIDMapper	Contains default implementation of some IDMapper methods.
IDMapper	Base interface for all id mapping methods.