All Classes

Class	Description
AbstractIDMapper	Contains default implementation of some IDMapper methods.
AbstractIDMapperCapabilities	Simple implementation of IDMapperCapabilities, which assumes that the supported datasources are the same for target and source, and that the supported data sources and properties are static and known at creation time.
AttributeMapper	AttributeMapper knows about attributes for Xrefs.
BridgeDb	Central access point for connecting to IDMappers.
DataSource	Contains information about a certain DataSource.
DataSource.Builder	Uses builder pattern to set optional attributes for a DataSource.
DataSourcePatterns	Contains regular expression patterns for identifiers Can be used to guess the BioDataSource of an identifier of unknown origin.
Driver	A Driver knows how to create an IDMapper instance.
IDMapper	Base interface for all id mapping methods.
IDMapperCapabilities	Describes capabilities of an IDMapper.
IDMapperException	for all exceptions thrown by IDMapper interface.
IDMapperFile	Interface for ID mapping from files.
IDMapperStack	combines multiple IDMapper's in a stack.
IDMapperText	Class for mapping ID from delimited text file.
IDMapperWebservice
IDMappingReader	Interface for reading ID mapping data.
IDMappingReaderFromDelimitedReader	Class for reading ID mapping data from delimited reader.
IDMappingReaderFromText	Class for reading ID mapping data from delimited text file.
InternalUtils	To prevent duplication and redundancy, functions that are common to multiple IDMapper implementations can be placed here.
Measure
TransitiveGraph	Helper for calculating paths in IDMapperStack in transitive mode.
Xref	Stores an id + DataSource combination, which represents an unique gene product.
XrefIterator