Package org.bridgedb

Class AbstractIDMapperCapabilities

java.lang.Object

org.bridgedb.AbstractIDMapperCapabilities

All Implemented Interfaces:

IDMapperCapabilities

public abstract class AbstractIDMapperCapabilities
extends Object
implements IDMapperCapabilities

Simple implementation of IDMapperCapabilities, which assumes that the supported datasources are the same for target and source, and that the supported data sources and properties are static and known at creation time.

Constructor Summary

Constructors

Constructor	Description
AbstractIDMapperCapabilities(Set<DataSource> supportedDataSources, boolean freeSearchSupported, Map<String,String> props)

Method Summary

Modifier and Type	Method	Description
Set<String>	getKeys()
String	getProperty(String key)	Return a value for a property, or null if this property is not defined.
Set<DataSource>	getSupportedSrcDataSources()
Set<DataSource>	getSupportedTgtDataSources()
boolean	isFreeSearchSupported()
boolean	isMappingSupported(DataSource src, DataSource tgt)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractIDMapperCapabilities

public AbstractIDMapperCapabilities(Set<DataSource> supportedDataSources,
                                    boolean freeSearchSupported,
                                    Map<String,String> props)

Parameters:

supportedDataSources - Supported DataSources. IDMappers are usually symmetrical, so in the default implementation supportedDataSources is both target and source DataSources.

props - properties, may be null.

freeSearchSupported - if free search is supported or not

Method Detail

getKeys

public Set<String> getKeys()

Specified by:

getKeys in interface IDMapperCapabilities

Returns:

the keys of all properties. Implementations may return an empty set but never null.

getProperty

public String getProperty(String key)

Return a value for a property, or null if this property is not defined. Implementations are free to choose a set of properties. Suggested properties:

• Version
• DateCreated
• SourceDatabase
• SourceDatabaseVersion
• Species

Specified by:

getProperty in interface IDMapperCapabilities

Parameters:

key - key

Returns:

property string

getSupportedSrcDataSources

public Set<DataSource> getSupportedSrcDataSources()
                                           throws IDMapperException

Specified by:

getSupportedSrcDataSources in interface IDMapperCapabilities

Returns:

supported source ID types

Throws:

IDMapperException - if supported DataSources could not be determined because of service unavailability.

getSupportedTgtDataSources

public Set<DataSource> getSupportedTgtDataSources()
                                           throws IDMapperException

Specified by:

getSupportedTgtDataSources in interface IDMapperCapabilities

Returns:

supported target ID types

Throws:

IDMapperException - if supported DataSources could not be determined because of service unavailability.

isMappingSupported

public boolean isMappingSupported(DataSource src,
                                  DataSource tgt)
                           throws IDMapperException

Specified by:

isMappingSupported in interface IDMapperCapabilities

Parameters:

src - source data source

tgt - target data source

Returns:

true if mapping is supported from src to des

Throws:

IDMapperException - if service is unavailable

isFreeSearchSupported

public boolean isFreeSearchSupported()

Specified by:

isFreeSearchSupported in interface IDMapperCapabilities

Returns:

true if free text search is supported, false otherwise.