Uses of Class
org.bridgedb.DataSource.Builder

Packages that use DataSource.Builder

Package	Description
org.bridgedb	BridgeDb is a java library intended for dealing with identifiers for biological entities such as genes, proteins, metabolites.

Uses of DataSource.Builder in org.bridgedb

Methods in org.bridgedb that return DataSource.Builder

Modifier and Type	Method	Description
DataSource.Builder	DataSource.Builder.alternative(String alternative)	Allow the setting but not changing of an alternative name
DataSource.Builder	DataSource.Builder.bioregistryPrefix(String prefix)
DataSource.Builder	DataSource.Builder.categories(String categories)
DataSource.Builder	DataSource.Builder.categories(String[] categories)
DataSource.Builder	DataSource.Builder.compactIdentifierPrefix(String prefix)
DataSource.Builder	DataSource.Builder.deprecated(boolean isDeprecated)
DataSource.Builder	DataSource.Builder.deprecatedBy(DataSource sourceToUseInstead)	Sets the DataSource which should be used instead of this deprecated one.
DataSource.Builder	DataSource.Builder.description(String description)	Allow the setting but not changing of a description
DataSource.Builder	DataSource.Builder.identifiersOrgBase(String base)	Note: Since version 2 The base must start with urn:miriam:.
DataSource.Builder	DataSource.Builder.idExample(String idExample)	Note: Unlike most builder methods this one does allow the idExample to be change even if already set.
DataSource.Builder	DataSource.Builder.mainUrl(String mainUrl)	Note: Since version 2 this method no longer allows changing a mainUrl once set.
DataSource.Builder	DataSource.Builder.miriamBase(String base)
static DataSource.Builder	DataSource.mock(String sysCode, String fullName)	Create a new DataSource with (optional) detailed information with registration.
DataSource.Builder	DataSource.Builder.organism(Object organism)	Since version 2 This method no longer allows you to change the Organism of a DataSource once set.
DataSource.Builder	DataSource.Builder.primary(boolean isPrimary)	Note: Unlike most builder methods this one does allow the idPrimary to be change even if already set.
static DataSource.Builder	DataSource.register(String sysCode, String fullName)	Register a new DataSource with (optional) detailed information.
DataSource.Builder	DataSource.Builder.type(String type)	Since version 2 This method no longer allow changing the type of a DataSource once set.
DataSource.Builder	DataSource.Builder.urlPattern(String urlPattern)
DataSource.Builder	DataSource.Builder.urnBase(String base)	This adds a miriam base to the DataSource.