org.bridgedb.impl

Class TransitiveGraph

java.lang.Object

org.bridgedb.impl.TransitiveGraph

public class TransitiveGraph
extends Object

Helper for calculating paths in IDMapperStack in transitive mode.

Constructor Summary

Constructors

Constructor and Description
TransitiveGraph(List<IDMapper> gdbs) Constructor: immediately starts calculating paths.

Method Summary

Modifier and Type	Method and Description
boolean	isTransitiveMappingSupported(DataSource src, DataSource tgt)
Set<Xref>	mapIDtransitiveTargetted(Xref ref, Set<DataSource> dsFilter)
Set<Xref>	mapIDtransitiveUntargetted(Xref ref)
void	printMap(Map<DataSource,Set<org.bridgedb.impl.TransitiveGraph.Path>> map) This is for testing.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TransitiveGraph

public TransitiveGraph(List<IDMapper> gdbs)
                throws IDMapperException

Constructor: immediately starts calculating paths.

Parameters:

gdbs - - list of IDMappers

Throws:

IDMapperException - - exception class

Method Detail

printMap

public void printMap(Map<DataSource,Set<org.bridgedb.impl.TransitiveGraph.Path>> map)

This is for testing. May be removed in the future.

Parameters:

map - - map of DataSource and Set of Paths

isTransitiveMappingSupported

public boolean isTransitiveMappingSupported(DataSource src,
                                            DataSource tgt)
                                     throws IDMapperException

Throws:

IDMapperException

mapIDtransitiveTargetted

public Set<Xref> mapIDtransitiveTargetted(Xref ref,
                                          Set<DataSource> dsFilter)
                                   throws IDMapperException

Throws:

IDMapperException

mapIDtransitiveUntargetted

public Set<Xref> mapIDtransitiveUntargetted(Xref ref)
                                     throws IDMapperException

Throws:

IDMapperException