org.bridgedb.file

Interface IDMappingReader

All Known Implementing Classes:

IDMappingReaderFromDelimitedReader, IDMappingReaderFromText

public interface IDMappingReader

Interface for reading ID mapping data.

Method Summary

Modifier and Type	Method and Description
Set<DataSource>	getDataSources() Get DataSources from the file.
Map<Xref,Set<Xref>>	getIDMappings() Get Xrefs from the file.

Method Detail

getDataSources

Set<DataSource> getDataSources()
                        throws IDMapperException

Get DataSources from the file.

Returns:

DataSources from the file

Throws:

IDMapperException - if failed to read the file

getIDMappings

Map<Xref,Set<Xref>> getIDMappings()
                           throws IDMapperException

Get Xrefs from the file.

Returns:

Map from a Xref to the Set of all its matched Xref.

Throws:

IDMapperException - if failed to read the file