Uses of Package
org.bridgedb

Packages that use org.bridgedb

Package	Description
org.bridgedb	BridgeDb is a java library intended for dealing with identifiers for biological entities such as genes, proteins, metabolites.
org.bridgedb.file	Driver and helper classes for using simple files as an identifier mapping service.
org.bridgedb.impl
org.bridgedb.webservice

Classes in org.bridgedb used by org.bridgedb

Class and Description
AttributeMapper AttributeMapper knows about attributes for Xrefs.
DataSource Contains information about a certain DataSource.
DataSource.Builder Uses builder pattern to set optional attributes for a DataSource.
Driver A Driver knows how to create an IDMapper instance.
IDMapper Base interface for all id mapping methods.
IDMapperCapabilities Describes capabilities of an IDMapper.
IDMapperException for all exceptions thrown by IDMapper interface.
Xref Stores an id + DataSource combination, which represents an unique gene product.

Classes in org.bridgedb used by org.bridgedb.file

Class and Description
DataSource Contains information about a certain DataSource.
IDMapper Base interface for all id mapping methods.
IDMapperCapabilities Describes capabilities of an IDMapper.
IDMapperException for all exceptions thrown by IDMapper interface.
Xref Stores an id + DataSource combination, which represents an unique gene product.

Classes in org.bridgedb used by org.bridgedb.impl

Class and Description
DataSource Contains information about a certain DataSource.
IDMapper Base interface for all id mapping methods.
IDMapperException for all exceptions thrown by IDMapper interface.
Xref Stores an id + DataSource combination, which represents an unique gene product.

Classes in org.bridgedb used by org.bridgedb.webservice

Class and Description
AbstractIDMapper Contains default implementation of some IDMapper methods.
IDMapper Base interface for all id mapping methods.