Index (ClearTK ClearNLP 2.0.0 API)

A B C D E F G H I J L M N O P R S T U V W X

A

accept(File, String) - Method in class org.cleartk.util.cr.RegexFileFilter: Checks to see if the filename matches one of the regular expressions.
accept(File) - Method in class org.cleartk.util.cr.UriCollectionReader.RejectSystemDirectories
accept(File, String) - Method in class org.cleartk.util.cr.UriCollectionReader.RejectSystemDirectories
accept(File) - Method in class org.cleartk.util.cr.UriCollectionReader.RejectSystemFiles
accept(File, String) - Method in class org.cleartk.util.cr.UriCollectionReader.RejectSystemFiles
Ace2005Document - Class in org.cleartk.ne.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Ace2005Document() - Constructor for class org.cleartk.ne.type.Ace2005Document: Never called.
Ace2005Document(int, TOP_Type) - Constructor for class org.cleartk.ne.type.Ace2005Document: Internal - constructor used by generator
Ace2005Document(JCas) - Constructor for class org.cleartk.ne.type.Ace2005Document
Ace2005Document(JCas, int, int) - Constructor for class org.cleartk.ne.type.Ace2005Document
Ace2005Document_Type - Class in org.cleartk.ne.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Ace2005Document_Type(JCas, Type) - Constructor for class org.cleartk.ne.type.Ace2005Document_Type: initialize variables to correspond with Cas Type and Features
addChild(TreebankNode) - Method in class org.cleartk.util.treebank.TreebankNode
addToBuffer(String) - Method in class org.cleartk.util.InputStreamHandler
ALL_TESTS_PROPERTY_VALUE - Static variable in class org.cleartk.test.util.CleartkTestBase: Value for the CleartkTestBase.SKIP_TESTS_PROPERTY property that indicates that all tests that can be skipped are disabled.
Anchor - Class in org.cleartk.timeml.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Anchor() - Constructor for class org.cleartk.timeml.type.Anchor: Never called.
Anchor(int, TOP_Type) - Constructor for class org.cleartk.timeml.type.Anchor: Internal - constructor used by generator
Anchor(JCas) - Constructor for class org.cleartk.timeml.type.Anchor
Anchor(JCas, int, int) - Constructor for class org.cleartk.timeml.type.Anchor
Anchor_Type - Class in org.cleartk.timeml.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Anchor_Type(JCas, Type) - Constructor for class org.cleartk.timeml.type.Anchor_Type: initialize variables to correspond with Cas Type and Features
AnnotationUtil - Class in org.cleartk.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
AnnotationUtil() - Constructor for class org.cleartk.util.AnnotationUtil
AnnotationWriter<ANNOTATION_TYPE extends Annotation> - Interface in org.cleartk.util.ae.linewriter: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
ARCH_PPC - Static variable in class org.cleartk.util.PlatformDetection
ARCH_X86_32 - Static variable in class org.cleartk.util.PlatformDetection
ARCH_X86_64 - Static variable in class org.cleartk.util.PlatformDetection
Argument - Class in org.cleartk.srl.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Argument() - Constructor for class org.cleartk.srl.type.Argument: Never called.
Argument(int, TOP_Type) - Constructor for class org.cleartk.srl.type.Argument: Internal - constructor used by generator
Argument(JCas) - Constructor for class org.cleartk.srl.type.Argument
Argument(JCas, int, int) - Constructor for class org.cleartk.srl.type.Argument
Argument_Type - Class in org.cleartk.srl.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Argument_Type(JCas, Type) - Constructor for class org.cleartk.srl.type.Argument_Type: initialize variables to correspond with Cas Type and Features
assumeBigMemoryTestsEnabled() - Method in class org.cleartk.test.util.CleartkTestBase: Subclasses should call this method at the beginning of a test that will take a long time to run.
assumeLongTestsEnabled() - Method in class org.cleartk.test.util.CleartkTestBase: Subclasses should call this method at the beginning of a test that will take a long time to run.
assumeTestsEnabled(String...) - Method in class org.cleartk.test.util.CleartkTestBase: Subclasses should call this method at the beginning of a test to check whether a specific type of test is enabled by checking whether the name of that test is contained in the "cleartk.skipTests" property.
AuthorInfo - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-test-util/target/jcasgen/typesystem.xml
AuthorInfo() - Constructor for class org.cleartk.test.util.type.AuthorInfo: Never called.
AuthorInfo(int, TOP_Type) - Constructor for class org.cleartk.test.util.type.AuthorInfo: Internal - constructor used by generator
AuthorInfo(JCas) - Constructor for class org.cleartk.test.util.type.AuthorInfo
AuthorInfo(JCas, int, int) - Constructor for class org.cleartk.test.util.type.AuthorInfo
AuthorInfo_Type - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014
AuthorInfo_Type(JCas, Type) - Constructor for class org.cleartk.test.util.type.AuthorInfo_Type: initialize variables to correspond with Cas Type and Features

B

BaseConversion - Class in org.cleartk.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
BaseConversion() - Constructor for class org.cleartk.util.BaseConversion
BIG_MEMORY_TEST_MESSAGE - Static variable in class org.cleartk.test.util.CleartkTestBase: A message indicating that the current test requires a lot of memory, and giving instructions how to skip it.
BIG_MEMORY_TESTS_PROPERTY_VALUE - Static variable in class org.cleartk.test.util.CleartkTestBase: Value for the CleartkTestBase.SKIP_TESTS_PROPERTY property that indicates that tests requiring a lot of memory should be disabled.
BlankLineBlockWriter - Class in org.cleartk.util.ae.linewriter.block: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
BlankLineBlockWriter() - Constructor for class org.cleartk.util.ae.linewriter.block.BlankLineBlockWriter
BlockWriter<BLOCK_TYPE extends Annotation> - Interface in org.cleartk.util.ae.linewriter: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.

C

checkTypeParameterIsAssignable(Class<T>, String, T, Class<U>, String, U) - Static method in class org.cleartk.util.ReflectionUtil: Checks that the given type parameters of the given objects are compatible.
checkTypeParametersAreEqual(Class<T>, String, T, Class<U>, String, U, Class<E>) - Static method in class org.cleartk.util.ReflectionUtil: Checks that the given type parameters of the given objects are exactly equal.
Chunk - Class in org.cleartk.ne.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Chunk() - Constructor for class org.cleartk.ne.type.Chunk: Never called.
Chunk(int, TOP_Type) - Constructor for class org.cleartk.ne.type.Chunk: Internal - constructor used by generator
Chunk(JCas) - Constructor for class org.cleartk.ne.type.Chunk
Chunk(JCas, int, int) - Constructor for class org.cleartk.ne.type.Chunk
Chunk - Class in org.cleartk.srl.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Chunk() - Constructor for class org.cleartk.srl.type.Chunk: Never called.
Chunk(int, TOP_Type) - Constructor for class org.cleartk.srl.type.Chunk: Internal - constructor used by generator
Chunk(JCas) - Constructor for class org.cleartk.srl.type.Chunk
Chunk(JCas, int, int) - Constructor for class org.cleartk.srl.type.Chunk
Chunk - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-test-util/target/jcasgen/typesystem.xml
Chunk() - Constructor for class org.cleartk.test.util.type.Chunk: Never called.
Chunk(int, TOP_Type) - Constructor for class org.cleartk.test.util.type.Chunk: Internal - constructor used by generator
Chunk(JCas) - Constructor for class org.cleartk.test.util.type.Chunk
Chunk(JCas, int, int) - Constructor for class org.cleartk.test.util.type.Chunk
Chunk_Type - Class in org.cleartk.ne.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Chunk_Type(JCas, Type) - Constructor for class org.cleartk.ne.type.Chunk_Type: initialize variables to correspond with Cas Type and Features
Chunk_Type - Class in org.cleartk.srl.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Chunk_Type(JCas, Type) - Constructor for class org.cleartk.srl.type.Chunk_Type: initialize variables to correspond with Cas Type and Features
Chunk_Type - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014
Chunk_Type(JCas, Type) - Constructor for class org.cleartk.test.util.type.Chunk_Type: initialize variables to correspond with Cas Type and Features
cleanUPRegex1 - Static variable in class org.cleartk.util.treebank.TreebankFormatParser
cleanUPRegex2 - Static variable in class org.cleartk.util.treebank.TreebankFormatParser
cleanUPRegex3 - Static variable in class org.cleartk.util.treebank.TreebankFormatParser
cleanUPRegex4 - Static variable in class org.cleartk.util.treebank.TreebankFormatParser
CleartkDependencyOps - Class in org.cleartk.clearnlp: Defines common set of dependency graph data type operations used to convert and query ClearTK dependency types such as TopDependencyNode, DependencyNode and DependencyRelation
CleartkDependencyOps() - Constructor for class org.cleartk.clearnlp.CleartkDependencyOps
CleartkInitializationException - Exception in org.cleartk.util: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
CleartkInitializationException(String, String, Object...) - Constructor for exception org.cleartk.util.CleartkInitializationException
CleartkInitializationException(Throwable, String, String, Object...) - Constructor for exception org.cleartk.util.CleartkInitializationException
CleartkSemanticRoleOps - Class in org.cleartk.clearnlp: Defines common set of token data type operations used to convert output from semantic role labelers into the annotations and properties for SemanticArgument and Predicate
CleartkSemanticRoleOps() - Constructor for class org.cleartk.clearnlp.CleartkSemanticRoleOps
CleartkTestBase - Class in org.cleartk.test.util: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
CleartkTestBase() - Constructor for class org.cleartk.test.util.CleartkTestBase
CleartkTokenOps - Class in org.cleartk.clearnlp: Defines common set of token data type operations used to convert output from tokenizers, pos taggers, and lemmatizers into the annotations and properties of Token
CleartkTokenOps() - Constructor for class org.cleartk.clearnlp.CleartkTokenOps
close() - Method in class org.cleartk.util.cr.FilesCollectionReader
close() - Method in class org.cleartk.util.cr.linereader.LineReader
collectionProcessComplete() - Method in class org.cleartk.util.ae.linewriter.LineWriter
COMMON_TESTS_PROPERTY_VALUE - Static variable in class org.cleartk.test.util.CleartkTestBase: Value for the CleartkTestBase.SKIP_TESTS_PROPERTY property that indicates that commonly skipped tests should be disabled.
completed - Variable in class org.cleartk.util.cr.FilesCollectionReader
CompressedStringBiMap - Class in org.cleartk.util.collection: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
CompressedStringBiMap() - Constructor for class org.cleartk.util.collection.CompressedStringBiMap
contains(Annotation, Annotation) - Static method in class org.cleartk.util.AnnotationUtil
convertBase(int, int) - Static method in class org.cleartk.util.BaseConversion
countFiles(Iterator<File>) - Method in class org.cleartk.util.cr.FilesCollectionReader
CoveredTextAnnotationWriter - Class in org.cleartk.util.ae.linewriter.annotation: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
CoveredTextAnnotationWriter() - Constructor for class org.cleartk.util.ae.linewriter.annotation.CoveredTextAnnotationWriter
createArgument(JCas, Token, String) - Method in class org.cleartk.clearnlp.CleartkSemanticRoleOps
createArgument(JCas, ARGUMENT_SPAN_TYPE, String) - Method in interface org.cleartk.clearnlp.SemanticRoleOps
createFileIterator() - Method in class org.cleartk.util.cr.FilesCollectionReader
createNode(JCas, Token) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
createNode(JCas, NODE_SPAN_TYPE) - Method in interface org.cleartk.clearnlp.DependencyOps: Creates a new dependency node for the specified span
createPredicate(JCas, Token, String) - Method in class org.cleartk.clearnlp.CleartkSemanticRoleOps
createPredicate(JCas, PREDICATE_SPAN_TYPE, String) - Method in interface org.cleartk.clearnlp.SemanticRoleOps
createRelation(JCas, DependencyNode, DependencyNode, String) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
createRelation(JCas, NODE_TYPE, NODE_TYPE, String) - Method in interface org.cleartk.clearnlp.DependencyOps: Creates a relation between the two nodes.
createRootNode(JCas, Sentence) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
createRootNode(JCas, ROOT_NODE_SPAN_TYPE) - Method in interface org.cleartk.clearnlp.DependencyOps
createTestEnabledMessage(String, String) - Static method in class org.cleartk.test.util.CleartkTestBase: Subclasses should call this method to create a message that explains how to disable a test.
createToken(JCas, int, int) - Method in class org.cleartk.clearnlp.CleartkTokenOps
createToken(JCas, int, int) - Method in interface org.cleartk.clearnlp.TokenOps
currentFile - Variable in class org.cleartk.util.cr.FilesCollectionReader

D

DEFAULT_DICTIONARY_FILE_NAME - Static variable in class org.cleartk.clearnlp.MpAnalyzer
DEFAULT_DICTIONARY_FILE_NAME - Static variable in class org.cleartk.clearnlp.MpAnalyzer_ImplBase
DEFAULT_DICTIONARY_FILE_NAME - Static variable in class org.cleartk.clearnlp.Tokenizer_ImplBase
DEFAULT_MODEL_PATH - Static variable in class org.cleartk.clearnlp.DependencyParser_ImplBase
DEFAULT_MODEL_PATH - Static variable in class org.cleartk.clearnlp.PosTagger_ImplBase
DEFAULT_PRED_ID_MODEL_PATH - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
DEFAULT_ROLESET_MODEL_PATH - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
DEFAULT_SRL_MODEL_PATH - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
DefaultLineHandler - Class in org.cleartk.util.cr.linereader: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
DefaultLineHandler() - Constructor for class org.cleartk.util.cr.linereader.DefaultLineHandler
DefaultTestBase - Class in org.cleartk.test.util: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
DefaultTestBase() - Constructor for class org.cleartk.test.util.DefaultTestBase
delegate() - Method in class org.cleartk.util.collection.CompressedStringBiMap
DependencyNode - Class in org.cleartk.syntax.dependency.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
DependencyNode() - Constructor for class org.cleartk.syntax.dependency.type.DependencyNode: Never called.
DependencyNode(int, TOP_Type) - Constructor for class org.cleartk.syntax.dependency.type.DependencyNode: Internal - constructor used by generator
DependencyNode(JCas) - Constructor for class org.cleartk.syntax.dependency.type.DependencyNode
DependencyNode(JCas, int, int) - Constructor for class org.cleartk.syntax.dependency.type.DependencyNode
DependencyNode_Type - Class in org.cleartk.syntax.dependency.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
DependencyNode_Type(JCas, Type) - Constructor for class org.cleartk.syntax.dependency.type.DependencyNode_Type: initialize variables to correspond with Cas Type and Features
DependencyOps<NODE_TYPE extends TOP,NODE_SPAN_TYPE extends Annotation,ROOT_NODE_TYPE extends NODE_TYPE,ROOT_NODE_SPAN_TYPE extends Annotation,RELATION_TYPE extends TOP> - Interface in org.cleartk.clearnlp: Defines common set of dependency graph data type operations used to convert to and query in the target type system
DependencyParser - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
DependencyParser() - Constructor for class org.cleartk.clearnlp.DependencyParser
DependencyParser_ImplBase<WINDOW_TYPE extends Annotation,TOKEN_TYPE extends Annotation,DEPENDENCY_NODE_TYPE extends TOP,DEPENDENCY_ROOT_NODE_TYPE extends DEPENDENCY_NODE_TYPE,DEPENDENCY_RELATION_TYPE extends TOP> - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
DependencyParser_ImplBase(TokenOps<TOKEN_TYPE>, DependencyOps<DEPENDENCY_NODE_TYPE, TOKEN_TYPE, DEPENDENCY_ROOT_NODE_TYPE, WINDOW_TYPE, DEPENDENCY_RELATION_TYPE>) - Constructor for class org.cleartk.clearnlp.DependencyParser_ImplBase
DependencyRelation - Class in org.cleartk.syntax.dependency.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
DependencyRelation() - Constructor for class org.cleartk.syntax.dependency.type.DependencyRelation: Never called.
DependencyRelation(int, TOP_Type) - Constructor for class org.cleartk.syntax.dependency.type.DependencyRelation: Internal - constructor used by generator
DependencyRelation(JCas) - Constructor for class org.cleartk.syntax.dependency.type.DependencyRelation
DependencyRelation - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-test-util/target/jcasgen/typesystem.xml
DependencyRelation() - Constructor for class org.cleartk.test.util.type.DependencyRelation: Never called.
DependencyRelation(int, TOP_Type) - Constructor for class org.cleartk.test.util.type.DependencyRelation: Internal - constructor used by generator
DependencyRelation(JCas) - Constructor for class org.cleartk.test.util.type.DependencyRelation
DependencyRelation(JCas, int, int) - Constructor for class org.cleartk.test.util.type.DependencyRelation
DependencyRelation_Type - Class in org.cleartk.syntax.dependency.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
DependencyRelation_Type(JCas, Type) - Constructor for class org.cleartk.syntax.dependency.type.DependencyRelation_Type: initialize variables to correspond with Cas Type and Features
DependencyRelation_Type - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014
DependencyRelation_Type(JCas, Type) - Constructor for class org.cleartk.test.util.type.DependencyRelation_Type: initialize variables to correspond with Cas Type and Features
DescriptorTestUtil - Class in org.cleartk.test.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
DescriptorTestUtil() - Constructor for class org.cleartk.test.util.DescriptorTestUtil
displayText() - Method in class org.cleartk.util.treebank.TreebankNode
DocumentCreationTime - Class in org.cleartk.timeml.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
DocumentCreationTime() - Constructor for class org.cleartk.timeml.type.DocumentCreationTime: Never called.
DocumentCreationTime(int, TOP_Type) - Constructor for class org.cleartk.timeml.type.DocumentCreationTime: Internal - constructor used by generator
DocumentCreationTime(JCas) - Constructor for class org.cleartk.timeml.type.DocumentCreationTime
DocumentCreationTime(JCas, int, int) - Constructor for class org.cleartk.timeml.type.DocumentCreationTime
DocumentCreationTime_Type - Class in org.cleartk.timeml.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
DocumentCreationTime_Type(JCas, Type) - Constructor for class org.cleartk.timeml.type.DocumentCreationTime_Type: initialize variables to correspond with Cas Type and Features
DocumentIdBlockWriter - Class in org.cleartk.util.ae.linewriter.block: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
DocumentIdBlockWriter() - Constructor for class org.cleartk.util.ae.linewriter.block.DocumentIdBlockWriter
DoNothingBlockWriter - Class in org.cleartk.util.ae.linewriter.block: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
DoNothingBlockWriter() - Constructor for class org.cleartk.util.ae.linewriter.block.DoNothingBlockWriter

E

editDistance(String, String) - Static method in class org.cleartk.util.similarity.Levenshtein
Event - Class in org.cleartk.timeml.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Event() - Constructor for class org.cleartk.timeml.type.Event: Never called.
Event(int, TOP_Type) - Constructor for class org.cleartk.timeml.type.Event: Internal - constructor used by generator
Event(JCas) - Constructor for class org.cleartk.timeml.type.Event
Event(JCas, int, int) - Constructor for class org.cleartk.timeml.type.Event
Event_Type - Class in org.cleartk.timeml.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Event_Type(JCas, Type) - Constructor for class org.cleartk.timeml.type.Event_Type: initialize variables to correspond with Cas Type and Features

F

featOkTst - Static variable in class org.cleartk.ne.type.Ace2005Document_Type
featOkTst - Static variable in class org.cleartk.ne.type.Chunk_Type
featOkTst - Static variable in class org.cleartk.ne.type.GazetteerNamedEntityMention_Type
featOkTst - Static variable in class org.cleartk.ne.type.NamedEntity_Type
featOkTst - Static variable in class org.cleartk.ne.type.NamedEntityMention_Type
featOkTst - Static variable in class org.cleartk.score.type.ScoredAnnotation_Type
featOkTst - Static variable in class org.cleartk.score.type.ScoredTOP_Type
featOkTst - Static variable in class org.cleartk.srl.type.Argument_Type
featOkTst - Static variable in class org.cleartk.srl.type.Chunk_Type
featOkTst - Static variable in class org.cleartk.srl.type.Predicate_Type
featOkTst - Static variable in class org.cleartk.srl.type.SemanticArgument_Type
featOkTst - Static variable in class org.cleartk.syntax.constituent.type.TerminalTreebankNode_Type
featOkTst - Static variable in class org.cleartk.syntax.constituent.type.TopTreebankNode_Type
featOkTst - Static variable in class org.cleartk.syntax.constituent.type.TreebankNode_Type
featOkTst - Static variable in class org.cleartk.syntax.dependency.type.DependencyNode_Type
featOkTst - Static variable in class org.cleartk.syntax.dependency.type.DependencyRelation_Type
featOkTst - Static variable in class org.cleartk.syntax.dependency.type.TopDependencyNode_Type
featOkTst - Static variable in class org.cleartk.test.util.type.AuthorInfo_Type
featOkTst - Static variable in class org.cleartk.test.util.type.Chunk_Type
featOkTst - Static variable in class org.cleartk.test.util.type.DependencyRelation_Type
featOkTst - Static variable in class org.cleartk.test.util.type.Header_Type
featOkTst - Static variable in class org.cleartk.test.util.type.Lemma_Type
featOkTst - Static variable in class org.cleartk.test.util.type.NamedEntityMention_Type
featOkTst - Static variable in class org.cleartk.test.util.type.Orthography_Type
featOkTst - Static variable in class org.cleartk.test.util.type.Parenthetical_Type
featOkTst - Static variable in class org.cleartk.test.util.type.PosTag_Type
featOkTst - Static variable in class org.cleartk.test.util.type.Sentence_Type
featOkTst - Static variable in class org.cleartk.test.util.type.Token_Type
featOkTst - Static variable in class org.cleartk.timeml.type.Anchor_Type
featOkTst - Static variable in class org.cleartk.timeml.type.DocumentCreationTime_Type
featOkTst - Static variable in class org.cleartk.timeml.type.Event_Type
featOkTst - Static variable in class org.cleartk.timeml.type.TemporalLink_Type
featOkTst - Static variable in class org.cleartk.timeml.type.Text_Type
featOkTst - Static variable in class org.cleartk.timeml.type.Time_Type
featOkTst - Static variable in class org.cleartk.token.type.Sentence_Type
featOkTst - Static variable in class org.cleartk.token.type.Subtoken_Type
featOkTst - Static variable in class org.cleartk.token.type.Token_Type
featOkTst - Static variable in class org.cleartk.util.type.Parenthetical_Type
fileNotFound(File) - Static method in exception org.cleartk.util.CleartkInitializationException
files - Variable in class org.cleartk.util.cr.FilesCollectionReader
FilesCollectionReader - Class in org.cleartk.util.cr: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
FilesCollectionReader() - Constructor for class org.cleartk.util.cr.FilesCollectionReader
filesCount - Variable in class org.cleartk.util.cr.FilesCollectionReader
fileToUri - Variable in class org.cleartk.util.cr.UriCollectionReader
finalizeMap() - Method in class org.cleartk.util.collection.GenericStringMapper
finalizeMap() - Method in interface org.cleartk.util.collection.StringMapper
folder - Variable in class org.cleartk.test.util.CleartkTestBase
forcePut(String, String) - Method in class org.cleartk.util.collection.CompressedStringBiMap

G

GazetteerNamedEntityMention - Class in org.cleartk.ne.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
GazetteerNamedEntityMention() - Constructor for class org.cleartk.ne.type.GazetteerNamedEntityMention: Never called.
GazetteerNamedEntityMention(int, TOP_Type) - Constructor for class org.cleartk.ne.type.GazetteerNamedEntityMention: Internal - constructor used by generator
GazetteerNamedEntityMention(JCas) - Constructor for class org.cleartk.ne.type.GazetteerNamedEntityMention
GazetteerNamedEntityMention(JCas, int, int) - Constructor for class org.cleartk.ne.type.GazetteerNamedEntityMention
GazetteerNamedEntityMention_Type - Class in org.cleartk.ne.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
GazetteerNamedEntityMention_Type(JCas, Type) - Constructor for class org.cleartk.ne.type.GazetteerNamedEntityMention_Type: initialize variables to correspond with Cas Type and Features
GenericStringMapper - Class in org.cleartk.util.collection: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
GenericStringMapper(int) - Constructor for class org.cleartk.util.collection.GenericStringMapper
GenKeyBiMap<K,V> - Interface in org.cleartk.util.collection: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
getAceSource() - Method in class org.cleartk.ne.type.Ace2005Document: getter for aceSource - gets
getAceSource(int) - Method in class org.cleartk.ne.type.Ace2005Document_Type
getAceType() - Method in class org.cleartk.ne.type.Ace2005Document: getter for aceType - gets
getAceType(int) - Method in class org.cleartk.ne.type.Ace2005Document_Type
getAceUri() - Method in class org.cleartk.ne.type.Ace2005Document: getter for aceUri - gets
getAceUri(int) - Method in class org.cleartk.ne.type.Ace2005Document_Type
getAncestor(int) - Method in class org.cleartk.util.treebank.TreebankNode
getAncestorWithType(TreebankNode, String) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil
getAnchorTime() - Method in class org.cleartk.timeml.type.Time: getter for anchorTime - gets
getAnchorTime(int) - Method in class org.cleartk.timeml.type.Time_Type
getAnnotation() - Method in class org.cleartk.ne.type.NamedEntityMention: getter for annotation - gets
getAnnotation(int) - Method in class org.cleartk.ne.type.NamedEntityMention_Type
getAnnotation() - Method in class org.cleartk.srl.type.Argument: getter for annotation - gets
getAnnotation(int) - Method in class org.cleartk.srl.type.Argument_Type
getAnnotation() - Method in class org.cleartk.srl.type.Predicate: getter for annotation - gets
getAnnotation(int) - Method in class org.cleartk.srl.type.Predicate_Type
getAnnotationsExtent(List<? extends Annotation>) - Static method in class org.cleartk.util.AnnotationUtil
getArch() - Method in class org.cleartk.util.PlatformDetection
getArguments() - Method in class org.cleartk.srl.type.Predicate: getter for arguments - gets
getArguments(int) - Method in class org.cleartk.srl.type.Predicate: indexed getter for arguments - gets an indexed value -
getArguments(int) - Method in class org.cleartk.srl.type.Predicate_Type
getArguments(int, int) - Method in class org.cleartk.srl.type.Predicate_Type
getAspect() - Method in class org.cleartk.timeml.type.Event: getter for aspect - gets
getAspect(int) - Method in class org.cleartk.timeml.type.Event_Type
getAuthors() - Method in class org.cleartk.test.util.type.Header: getter for authors - gets
getAuthors(int) - Method in class org.cleartk.test.util.type.Header: indexed getter for authors - gets an indexed value -
getAuthors(int) - Method in class org.cleartk.test.util.type.Header_Type
getAuthors(int, int) - Method in class org.cleartk.test.util.type.Header_Type
getBaseForm() - Method in class org.cleartk.srl.type.Predicate: getter for baseForm - gets
getBaseForm(int) - Method in class org.cleartk.srl.type.Predicate_Type
getBeginPoint() - Method in class org.cleartk.timeml.type.Time: getter for beginPoint - gets
getBeginPoint(int) - Method in class org.cleartk.timeml.type.Time_Type
getBuffer() - Method in class org.cleartk.util.InputStreamHandler
getCardinality() - Method in class org.cleartk.timeml.type.Event: getter for cardinality - gets
getCardinality(int) - Method in class org.cleartk.timeml.type.Event_Type
getChild() - Method in class org.cleartk.syntax.dependency.type.DependencyRelation: getter for Child - gets
getChild(int) - Method in class org.cleartk.syntax.dependency.type.DependencyRelation_Type
getChildRelations() - Method in class org.cleartk.syntax.dependency.type.DependencyNode: getter for ChildRelations - gets
getChildRelations(int) - Method in class org.cleartk.syntax.dependency.type.DependencyNode: indexed getter for ChildRelations - gets an indexed value -
getChildRelations(int) - Method in class org.cleartk.syntax.dependency.type.DependencyNode_Type
getChildRelations(int, int) - Method in class org.cleartk.syntax.dependency.type.DependencyNode_Type
getChildren() - Method in class org.cleartk.syntax.constituent.type.TreebankNode: getter for children - gets
getChildren(int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode: indexed getter for children - gets an indexed value -
getChildren(int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
getChildren(int, int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
getChildren() - Method in class org.cleartk.util.treebank.TreebankNode
getChunkType() - Method in class org.cleartk.ne.type.Chunk: getter for chunkType - gets
getChunkType(int) - Method in class org.cleartk.ne.type.Chunk_Type
getChunkType() - Method in class org.cleartk.srl.type.Chunk: getter for chunkType - gets
getChunkType(int) - Method in class org.cleartk.srl.type.Chunk_Type
getChunkType() - Method in class org.cleartk.test.util.type.Chunk: getter for chunkType - gets
getChunkType(int) - Method in class org.cleartk.test.util.type.Chunk_Type
getCollectionReader(String) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getCollectionReaderFromDirectory(File) - Static method in class org.cleartk.util.cr.UriCollectionReader
getCollectionReaderFromDirectory(File, Class<? extends IOFileFilter>, Class<? extends IOFileFilter>) - Static method in class org.cleartk.util.cr.UriCollectionReader
getCollectionReaderFromFiles(Collection<File>) - Static method in class org.cleartk.util.cr.UriCollectionReader
getCollectionReaderFromUris(Collection<URI>) - Static method in class org.cleartk.util.cr.UriCollectionReader
getCollectionReaderWithPatterns(String, String, String...) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getCollectionReaderWithSuffixes(String, String, String...) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getCollectionReaderWithView(String, String) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getCommonAncestor() - Method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil.TreebankNodePath
getCoreferenceAnnotations() - Method in class org.cleartk.srl.type.SemanticArgument: getter for coreferenceAnnotations - gets
getCoreferenceAnnotations(int) - Method in class org.cleartk.srl.type.SemanticArgument: indexed getter for coreferenceAnnotations - gets an indexed value -
getCoreferenceAnnotations(int) - Method in class org.cleartk.srl.type.SemanticArgument_Type
getCoreferenceAnnotations(int, int) - Method in class org.cleartk.srl.type.SemanticArgument_Type
getCreateViewAggregateDescription(String) - Static method in class org.cleartk.util.ae.UriToXmiCasAnnotator: Use this aggregate description if UriToDocumentTextAnnotator will be writing to a mapped view.
getDepRel() - Method in class org.cleartk.test.util.type.Token: getter for depRel - gets
getDepRel(int) - Method in class org.cleartk.test.util.type.Token: indexed getter for depRel - gets an indexed value -
getDepRel(int) - Method in class org.cleartk.test.util.type.Token_Type
getDepRel(int, int) - Method in class org.cleartk.test.util.type.Token_Type
getDepth(TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Calculates the depth of the TreebankNode.
getDescription() - Static method in class org.cleartk.clearnlp.DependencyParser: Convenience method for creating Analysis Engine for ClearNLP's dependency parser using default English model files
getDescription(String, String) - Static method in class org.cleartk.clearnlp.DependencyParser
getDescription() - Static method in class org.cleartk.clearnlp.MpAnalyzer: Convenience method to create Analysis Engine for ClearNLP's POSTagger + Lemmatizer using default English models and dictionaries.
getDescription(String) - Static method in class org.cleartk.clearnlp.MpAnalyzer
getDescription() - Static method in class org.cleartk.clearnlp.MpAnalyzer_ImplBase: Convenience method to create Analysis Engine for ClearNLP's POSTagger + Lemmatizer using default English models and dictionaries.
getDescription(String) - Static method in class org.cleartk.clearnlp.MpAnalyzer_ImplBase
getDescription() - Static method in class org.cleartk.clearnlp.PosTagger
getDescription(String, String) - Static method in class org.cleartk.clearnlp.PosTagger
getDescription() - Static method in class org.cleartk.clearnlp.SemanticRoleLabeler
getDescription(String, String, String, String) - Static method in class org.cleartk.clearnlp.SemanticRoleLabeler
getDescription() - Static method in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase: Convenience method for creating Analysis Engine for ClearNLP's dependency parser using default English model files
getDescription() - Static method in class org.cleartk.clearnlp.Tokenizer
getDescription(String) - Static method in class org.cleartk.clearnlp.Tokenizer
getDescription(String, URI) - Static method in class org.cleartk.clearnlp.Tokenizer
getDescription(Class<? extends Annotation>) - Static method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
getDescription(Class<? extends Annotation>, Class<? extends Annotation>) - Static method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
getDescription(Class<? extends Annotation>, Class<? extends Annotation>, char, char) - Static method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
getDescription() - Static method in class org.cleartk.util.ae.UriToDocumentTextAnnotator
getDescription() - Static method in class org.cleartk.util.ae.UriToXmiCasAnnotator
getDescription(File) - Static method in class org.cleartk.util.ae.XmiWriter
getDescription(String) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getDescription(File) - Static method in class org.cleartk.util.cr.linereader.LineReaderXmiWriter
getDescriptionForView(String) - Static method in class org.cleartk.util.ae.UriToDocumentTextAnnotator: This description will read the contents into the specify view.
getDescriptionFromDirectory(File) - Static method in class org.cleartk.util.cr.UriCollectionReader
getDescriptionFromDirectory(File, Class<? extends IOFileFilter>, Class<? extends IOFileFilter>) - Static method in class org.cleartk.util.cr.UriCollectionReader
getDescriptionFromFiles(Collection<File>) - Static method in class org.cleartk.util.cr.UriCollectionReader
getDescriptionFromUris(Collection<URI>) - Static method in class org.cleartk.util.cr.UriCollectionReader
getDescriptionWithPatterns(String, String, String...) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getDescriptionWithSuffixes(String, String, String...) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getDescriptionWithView(String, String) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getEndPoint() - Method in class org.cleartk.timeml.type.Time: getter for endPoint - gets
getEndPoint(int) - Method in class org.cleartk.timeml.type.Time_Type
getEntityClass() - Method in class org.cleartk.ne.type.NamedEntity: getter for entityClass - gets
getEntityClass(int) - Method in class org.cleartk.ne.type.NamedEntity_Type
getEntityId() - Method in class org.cleartk.ne.type.NamedEntity: getter for entityId - gets
getEntityId(int) - Method in class org.cleartk.ne.type.NamedEntity_Type
getEntitySubtype() - Method in class org.cleartk.ne.type.NamedEntity: getter for entitySubtype - gets
getEntitySubtype(int) - Method in class org.cleartk.ne.type.NamedEntity_Type
getEntityType() - Method in class org.cleartk.ne.type.NamedEntity: getter for entityType - gets
getEntityType(int) - Method in class org.cleartk.ne.type.NamedEntity_Type
getEventClass() - Method in class org.cleartk.timeml.type.Event: getter for eventClass - gets
getEventClass(int) - Method in class org.cleartk.timeml.type.Event_Type
getEventInstanceID() - Method in class org.cleartk.timeml.type.Event: getter for eventInstanceID - gets
getEventInstanceID(int) - Method in class org.cleartk.timeml.type.Event_Type
getExecutableSuffix() - Method in class org.cleartk.util.PlatformDetection
getFeature() - Method in class org.cleartk.srl.type.SemanticArgument: getter for feature - gets
getFeature(int) - Method in class org.cleartk.srl.type.SemanticArgument_Type
getFrameSet() - Method in class org.cleartk.srl.type.Predicate: getter for frameSet - gets
getFrameSet(int) - Method in class org.cleartk.srl.type.Predicate_Type
getFreq() - Method in class org.cleartk.timeml.type.Time: getter for freq - gets
getFreq(int) - Method in class org.cleartk.timeml.type.Time_Type
getFSGenerator() - Method in class org.cleartk.ne.type.Ace2005Document_Type
getFSGenerator() - Method in class org.cleartk.ne.type.Chunk_Type
getFSGenerator() - Method in class org.cleartk.ne.type.GazetteerNamedEntityMention_Type
getFSGenerator() - Method in class org.cleartk.ne.type.NamedEntity_Type
getFSGenerator() - Method in class org.cleartk.ne.type.NamedEntityMention_Type
getFSGenerator() - Method in class org.cleartk.score.type.ScoredAnnotation_Type
getFSGenerator() - Method in class org.cleartk.score.type.ScoredTOP_Type
getFSGenerator() - Method in class org.cleartk.srl.type.Argument_Type
getFSGenerator() - Method in class org.cleartk.srl.type.Chunk_Type
getFSGenerator() - Method in class org.cleartk.srl.type.Predicate_Type
getFSGenerator() - Method in class org.cleartk.srl.type.SemanticArgument_Type
getFSGenerator() - Method in class org.cleartk.syntax.constituent.type.TerminalTreebankNode_Type
getFSGenerator() - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode_Type
getFSGenerator() - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
getFSGenerator() - Method in class org.cleartk.syntax.dependency.type.DependencyNode_Type
getFSGenerator() - Method in class org.cleartk.syntax.dependency.type.DependencyRelation_Type
getFSGenerator() - Method in class org.cleartk.syntax.dependency.type.TopDependencyNode_Type
getFSGenerator() - Method in class org.cleartk.test.util.type.AuthorInfo_Type
getFSGenerator() - Method in class org.cleartk.test.util.type.Chunk_Type
getFSGenerator() - Method in class org.cleartk.test.util.type.DependencyRelation_Type
getFSGenerator() - Method in class org.cleartk.test.util.type.Header_Type
getFSGenerator() - Method in class org.cleartk.test.util.type.Lemma_Type
getFSGenerator() - Method in class org.cleartk.test.util.type.NamedEntityMention_Type
getFSGenerator() - Method in class org.cleartk.test.util.type.Orthography_Type
getFSGenerator() - Method in class org.cleartk.test.util.type.Parenthetical_Type
getFSGenerator() - Method in class org.cleartk.test.util.type.PosTag_Type
getFSGenerator() - Method in class org.cleartk.test.util.type.Sentence_Type
getFSGenerator() - Method in class org.cleartk.test.util.type.Token_Type
getFSGenerator() - Method in class org.cleartk.timeml.type.Anchor_Type
getFSGenerator() - Method in class org.cleartk.timeml.type.DocumentCreationTime_Type
getFSGenerator() - Method in class org.cleartk.timeml.type.Event_Type
getFSGenerator() - Method in class org.cleartk.timeml.type.TemporalLink_Type
getFSGenerator() - Method in class org.cleartk.timeml.type.Text_Type
getFSGenerator() - Method in class org.cleartk.timeml.type.Time_Type
getFSGenerator() - Method in class org.cleartk.token.type.Sentence_Type
getFSGenerator() - Method in class org.cleartk.token.type.Subtoken_Type
getFSGenerator() - Method in class org.cleartk.token.type.Token_Type
getFSGenerator() - Method in class org.cleartk.util.type.Parenthetical_Type
getFunctionInDocument() - Method in class org.cleartk.timeml.type.Time: getter for functionInDocument - gets
getFunctionInDocument(int) - Method in class org.cleartk.timeml.type.Time_Type
getHead(JCas, DependencyRelation) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
getHead(JCas, RELATION_TYPE) - Method in interface org.cleartk.clearnlp.DependencyOps
getHead() - Method in class org.cleartk.ne.type.NamedEntityMention: getter for head - gets
getHead(int) - Method in class org.cleartk.ne.type.NamedEntityMention_Type
getHead() - Method in class org.cleartk.syntax.dependency.type.DependencyRelation: getter for Head - gets
getHead(int) - Method in class org.cleartk.syntax.dependency.type.DependencyRelation_Type
getHead() - Method in class org.cleartk.test.util.type.DependencyRelation: getter for head - gets
getHead(int) - Method in class org.cleartk.test.util.type.DependencyRelation_Type
getHeadRelations(JCas, DependencyNode) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
getHeadRelations(JCas, NODE_TYPE) - Method in interface org.cleartk.clearnlp.DependencyOps
getHeadRelations() - Method in class org.cleartk.syntax.dependency.type.DependencyNode: getter for HeadRelations - gets
getHeadRelations(int) - Method in class org.cleartk.syntax.dependency.type.DependencyNode: indexed getter for HeadRelations - gets an indexed value -
getHeadRelations(int) - Method in class org.cleartk.syntax.dependency.type.DependencyNode_Type
getHeadRelations(int, int) - Method in class org.cleartk.syntax.dependency.type.DependencyNode_Type
getHyphenTag() - Method in class org.cleartk.srl.type.SemanticArgument: getter for hyphenTag - gets
getHyphenTag(int) - Method in class org.cleartk.srl.type.SemanticArgument_Type
getId() - Method in class org.cleartk.timeml.type.Anchor: getter for id - gets
getId(int) - Method in class org.cleartk.timeml.type.Anchor_Type
getId() - Method in class org.cleartk.timeml.type.TemporalLink: getter for id - gets
getId(int) - Method in class org.cleartk.timeml.type.TemporalLink_Type
getIndex() - Method in class org.cleartk.syntax.constituent.type.TerminalTreebankNode: getter for index - gets This value is the same as the index of this node in the top nodes list of terminals.
getIndex(int) - Method in class org.cleartk.syntax.constituent.type.TerminalTreebankNode_Type
getInputStream(Class<?>, String) - Static method in class org.cleartk.util.IoUtil: This method attempts to create an input stream from the given path by: Trying to parse it as a URL Trying to find it on the classpath, relative to the given class Trying to find it as a file on the file system
getInputStreamAsBufferedString(InputStream) - Static method in class org.cleartk.util.InputStreamHandler
getInputStreamAsList(InputStream) - Static method in class org.cleartk.util.InputStreamHandler
getInteger(String) - Method in class org.cleartk.util.collection.GenericStringMapper
getInteger(String) - Method in interface org.cleartk.util.collection.StringMapper
getLabel(JCas, DependencyRelation) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
getLabel(JCas, RELATION_TYPE) - Method in interface org.cleartk.clearnlp.DependencyOps
getLabel() - Method in class org.cleartk.srl.type.SemanticArgument: getter for label - gets
getLabel(int) - Method in class org.cleartk.srl.type.SemanticArgument_Type
getLabel() - Method in class org.cleartk.test.util.type.DependencyRelation: getter for label - gets
getLabel(int) - Method in class org.cleartk.test.util.type.DependencyRelation_Type
getLanguage() - Method in class org.cleartk.test.util.type.PosTag: getter for language - gets
getLanguage(int) - Method in class org.cleartk.test.util.type.PosTag_Type
getLastName() - Method in class org.cleartk.test.util.type.AuthorInfo: getter for lastName - gets
getLastName(int) - Method in class org.cleartk.test.util.type.AuthorInfo_Type
getLeaf() - Method in class org.cleartk.syntax.constituent.type.TreebankNode: getter for leaf - gets
getLeaf(int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
getLeafNode(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: Uses the leafNodePattern to identify a string as a terminal.
getLemma(JCas, Token) - Method in class org.cleartk.clearnlp.CleartkTokenOps
getLemma(JCas, TOKEN_TYPE) - Method in interface org.cleartk.clearnlp.TokenOps
getLemma() - Method in class org.cleartk.test.util.type.Token: getter for lemma - gets
getLemma(int) - Method in class org.cleartk.test.util.type.Token_Type
getLemma() - Method in class org.cleartk.token.type.Token: getter for lemma - gets
getLemma(int) - Method in class org.cleartk.token.type.Token_Type
getMentionedEntity() - Method in class org.cleartk.ne.type.NamedEntityMention: getter for mentionedEntity - gets
getMentionedEntity(int) - Method in class org.cleartk.ne.type.NamedEntityMention_Type
getMentionId() - Method in class org.cleartk.ne.type.NamedEntityMention: getter for mentionId - gets
getMentionId(int) - Method in class org.cleartk.ne.type.NamedEntityMention_Type
getMentions() - Method in class org.cleartk.ne.type.NamedEntity: getter for mentions - gets
getMentions(int) - Method in class org.cleartk.ne.type.NamedEntity: indexed getter for mentions - gets an indexed value -
getMentions(int) - Method in class org.cleartk.ne.type.NamedEntity_Type
getMentions(int, int) - Method in class org.cleartk.ne.type.NamedEntity_Type
getMentionType() - Method in class org.cleartk.ne.type.NamedEntityMention: getter for mentionType - gets
getMentionType(int) - Method in class org.cleartk.ne.type.NamedEntityMention_Type
getMod() - Method in class org.cleartk.timeml.type.Time: getter for mod - gets
getMod(int) - Method in class org.cleartk.timeml.type.Time_Type
getModality() - Method in class org.cleartk.timeml.type.Event: getter for modality - gets
getModality(int) - Method in class org.cleartk.timeml.type.Event_Type
getNext(JCas) - Method in class org.cleartk.util.cr.FilesCollectionReader
getNext(JCas) - Method in class org.cleartk.util.cr.linereader.LineReader
getNext(JCas) - Method in class org.cleartk.util.cr.UriCollectionReader
getNext(JCas) - Method in class org.cleartk.util.cr.XReader
getNodeTags() - Method in class org.cleartk.syntax.constituent.type.TreebankNode: getter for nodeTags - gets
getNodeTags(int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode: indexed getter for nodeTags - gets an indexed value -
getNodeTags(int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
getNodeTags(int, int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
getNodeType() - Method in class org.cleartk.syntax.constituent.type.TreebankNode: getter for nodeType - gets
getNodeType(int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
getNodeValue() - Method in class org.cleartk.syntax.constituent.type.TreebankNode: getter for nodeValue - gets
getNodeValue(int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
getOrGenerateInteger(String) - Method in class org.cleartk.util.collection.GenericStringMapper
getOrGenerateInteger(String) - Method in interface org.cleartk.util.collection.StringMapper
getOrGenerateKey(String) - Method in class org.cleartk.util.collection.CompressedStringBiMap
getOrGenerateKey(V) - Method in interface org.cleartk.util.collection.GenKeyBiMap
getOrthogr() - Method in class org.cleartk.test.util.type.Token: getter for orthogr - gets
getOrthogr(int) - Method in class org.cleartk.test.util.type.Token_Type
getOs() - Method in class org.cleartk.util.PlatformDetection
getParameterValue(String, String) - Static method in class org.cleartk.util.ParamUtil
getParent() - Method in class org.cleartk.syntax.constituent.type.TreebankNode: getter for parent - gets
getParent(int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
getParent(TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil
getParent() - Method in class org.cleartk.util.treebank.TreebankNode
getParseBegin() - Method in class org.cleartk.util.treebank.TreebankNode
getParseEnd() - Method in class org.cleartk.util.treebank.TreebankNode
getPath(TreebankNode, TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Get the path from the source TreebankNode to the target TreebankNode via the least common ancestor.
getPathToRoot(TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Find the path from a TreebankNode to the root of the tree it belongs to.
getPolarity() - Method in class org.cleartk.timeml.type.Event: getter for polarity - gets
getPolarity(int) - Method in class org.cleartk.timeml.type.Event_Type
getPos(JCas, Token) - Method in class org.cleartk.clearnlp.CleartkTokenOps
getPos(JCas, TOKEN_TYPE) - Method in interface org.cleartk.clearnlp.TokenOps
getPos() - Method in class org.cleartk.test.util.type.Token: getter for pos - gets
getPos(int) - Method in class org.cleartk.test.util.type.Token_Type
getPos() - Method in class org.cleartk.timeml.type.Event: getter for pos - gets
getPos(int) - Method in class org.cleartk.timeml.type.Event_Type
getPos() - Method in class org.cleartk.token.type.Token: getter for pos - gets
getPos(int) - Method in class org.cleartk.token.type.Token_Type
getPosition() - Method in class org.cleartk.token.type.Subtoken: getter for position - gets
getPosition(int) - Method in class org.cleartk.token.type.Subtoken_Type
getPosTag() - Method in class org.cleartk.test.util.type.Token: getter for posTag - gets
getPosTag(int) - Method in class org.cleartk.test.util.type.Token: indexed getter for posTag - gets an indexed value -
getPosTag(int) - Method in class org.cleartk.test.util.type.Token_Type
getPosTag(int, int) - Method in class org.cleartk.test.util.type.Token_Type
getPreposition() - Method in class org.cleartk.srl.type.SemanticArgument: getter for preposition - gets
getPreposition(int) - Method in class org.cleartk.srl.type.SemanticArgument_Type
getProgress() - Method in class org.cleartk.util.cr.FilesCollectionReader
getProgress() - Method in class org.cleartk.util.cr.linereader.LineReader
getProgress() - Method in class org.cleartk.util.cr.UriCollectionReader
getProjective() - Method in class org.cleartk.test.util.type.DependencyRelation: getter for projective - gets
getProjective(int) - Method in class org.cleartk.test.util.type.DependencyRelation_Type
getPropTxt() - Method in class org.cleartk.srl.type.Predicate: getter for propTxt - gets
getPropTxt(int) - Method in class org.cleartk.srl.type.Predicate_Type
getPropTxt() - Method in class org.cleartk.srl.type.SemanticArgument: getter for propTxt - gets
getPropTxt(int) - Method in class org.cleartk.srl.type.SemanticArgument_Type
getQuant() - Method in class org.cleartk.timeml.type.Time: getter for quant - gets
getQuant(int) - Method in class org.cleartk.timeml.type.Time_Type
getRelation() - Method in class org.cleartk.syntax.dependency.type.DependencyRelation: getter for Relation - gets
getRelation(int) - Method in class org.cleartk.syntax.dependency.type.DependencyRelation_Type
getRelationType() - Method in class org.cleartk.timeml.type.TemporalLink: getter for relationType - gets
getRelationType(int) - Method in class org.cleartk.timeml.type.TemporalLink_Type
getScore() - Method in class org.cleartk.score.type.ScoredAnnotation: getter for score - gets
getScore(int) - Method in class org.cleartk.score.type.ScoredAnnotation_Type
getScore() - Method in class org.cleartk.score.type.ScoredTOP: getter for score - gets
getScore(int) - Method in class org.cleartk.score.type.ScoredTOP_Type
getSentence() - Method in class org.cleartk.srl.type.Predicate: getter for sentence - gets
getSentence(int) - Method in class org.cleartk.srl.type.Predicate_Type
getSignalID() - Method in class org.cleartk.timeml.type.Event: getter for signalID - gets
getSignalID(int) - Method in class org.cleartk.timeml.type.Event_Type
getSignalID() - Method in class org.cleartk.timeml.type.TemporalLink: getter for signalID - gets
getSignalID(int) - Method in class org.cleartk.timeml.type.TemporalLink_Type
getSource() - Method in class org.cleartk.timeml.type.TemporalLink: getter for source - gets
getSource(int) - Method in class org.cleartk.timeml.type.TemporalLink_Type
getSourceToAncestorPath() - Method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil.TreebankNodePath
getStem() - Method in class org.cleartk.timeml.type.Event: getter for stem - gets
getStem(int) - Method in class org.cleartk.timeml.type.Event_Type
getStem() - Method in class org.cleartk.token.type.Token: getter for stem - gets
getStem(int) - Method in class org.cleartk.token.type.Token_Type
getSurroundingText(JCas, Annotation, Class<TOKEN_TYPE>, int, boolean) - Static method in class org.cleartk.util.AnnotationUtil: This method provides a way of getting some text before or after an annotation specified by some "window" of "tokens".
getTags() - Method in class org.cleartk.util.treebank.TreebankNode
getTarget() - Method in class org.cleartk.timeml.type.TemporalLink: getter for target - gets
getTarget(int) - Method in class org.cleartk.timeml.type.TemporalLink_Type
getTargetToAncestorPath() - Method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil.TreebankNodePath
getTemporalFunction() - Method in class org.cleartk.timeml.type.Time: getter for temporalFunction - gets
getTemporalFunction(int) - Method in class org.cleartk.timeml.type.Time_Type
getTense() - Method in class org.cleartk.timeml.type.Event: getter for tense - gets
getTense(int) - Method in class org.cleartk.timeml.type.Event_Type
getTerminal(int) - Method in class org.cleartk.util.treebank.TopTreebankNode
getTerminalCount() - Method in class org.cleartk.util.treebank.TopTreebankNode
getTerminals() - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode: getter for terminals - gets
getTerminals(int) - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode: indexed getter for terminals - gets an indexed value -
getTerminals(int) - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode_Type
getTerminals(int, int) - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode_Type
getTestFS() - Method in class org.cleartk.test.util.type.Lemma: getter for testFS - gets
getTestFS(int) - Method in class org.cleartk.test.util.type.Lemma: indexed getter for testFS - gets an indexed value -
getTestFS(int) - Method in class org.cleartk.test.util.type.Lemma_Type
getTestFS(int, int) - Method in class org.cleartk.test.util.type.Lemma_Type
getText() - Method in class org.cleartk.util.treebank.TreebankNode
getText() - Method in interface org.cleartk.util.treebank.TreebankObject
getTextBegin() - Method in class org.cleartk.util.treebank.TreebankNode
getTextEnd() - Method in class org.cleartk.util.treebank.TreebankNode
getTimeType() - Method in class org.cleartk.timeml.type.Time: getter for timeType - gets
getTimeType(int) - Method in class org.cleartk.timeml.type.Time_Type
getTokenIndex() - Method in class org.cleartk.syntax.constituent.type.TerminalTreebankNode: getter for tokenIndex - gets The value of this corresponds to the nth token in the sentence that this terminal corresponds to.
getTokenIndex(int) - Method in class org.cleartk.syntax.constituent.type.TerminalTreebankNode_Type
getTokenOps() - Method in class org.cleartk.clearnlp.Tokenizer
getTokenOps() - Method in class org.cleartk.clearnlp.Tokenizer_ImplBase
getTopNode(TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil
getTopNode() - Method in class org.cleartk.util.treebank.TreebankNode
getTreebankParse() - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode: getter for treebankParse - gets
getTreebankParse(int) - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode_Type
getTreebankParse() - Method in class org.cleartk.util.treebank.TopTreebankNode
getTreebankParse() - Method in class org.cleartk.util.treebank.TreebankNode
getType(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: Returns the type of a constituent of some fragment of a treebank parse.
getType() - Method in class org.cleartk.util.treebank.TreebankNode
getTypeArgument(Class<T>, String, T) - Static method in class org.cleartk.util.ReflectionUtil
getTypeArguments(Class<?>, Object) - Static method in class org.cleartk.util.ReflectionUtil: Try to find the instantiation of all of genericTypes type parameters in objs class.
getTypeArguments(Class<?>) - Method in interface org.cleartk.util.ReflectionUtil.TypeArgumentDelegator
getTypeIndexID() - Method in class org.cleartk.ne.type.Ace2005Document
getTypeIndexID() - Method in class org.cleartk.ne.type.Chunk
getTypeIndexID() - Method in class org.cleartk.ne.type.GazetteerNamedEntityMention
getTypeIndexID() - Method in class org.cleartk.ne.type.NamedEntity
getTypeIndexID() - Method in class org.cleartk.ne.type.NamedEntityMention
getTypeIndexID() - Method in class org.cleartk.score.type.ScoredAnnotation
getTypeIndexID() - Method in class org.cleartk.score.type.ScoredTOP
getTypeIndexID() - Method in class org.cleartk.srl.type.Argument
getTypeIndexID() - Method in class org.cleartk.srl.type.Chunk
getTypeIndexID() - Method in class org.cleartk.srl.type.Predicate
getTypeIndexID() - Method in class org.cleartk.srl.type.SemanticArgument
getTypeIndexID() - Method in class org.cleartk.syntax.constituent.type.TerminalTreebankNode
getTypeIndexID() - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode
getTypeIndexID() - Method in class org.cleartk.syntax.constituent.type.TreebankNode
getTypeIndexID() - Method in class org.cleartk.syntax.dependency.type.DependencyNode
getTypeIndexID() - Method in class org.cleartk.syntax.dependency.type.DependencyRelation
getTypeIndexID() - Method in class org.cleartk.syntax.dependency.type.TopDependencyNode
getTypeIndexID() - Method in class org.cleartk.test.util.type.AuthorInfo
getTypeIndexID() - Method in class org.cleartk.test.util.type.Chunk
getTypeIndexID() - Method in class org.cleartk.test.util.type.DependencyRelation
getTypeIndexID() - Method in class org.cleartk.test.util.type.Header
getTypeIndexID() - Method in class org.cleartk.test.util.type.Lemma
getTypeIndexID() - Method in class org.cleartk.test.util.type.NamedEntityMention
getTypeIndexID() - Method in class org.cleartk.test.util.type.Orthography
getTypeIndexID() - Method in class org.cleartk.test.util.type.Parenthetical
getTypeIndexID() - Method in class org.cleartk.test.util.type.PosTag
getTypeIndexID() - Method in class org.cleartk.test.util.type.Sentence
getTypeIndexID() - Method in class org.cleartk.test.util.type.Token
getTypeIndexID() - Method in class org.cleartk.timeml.type.Anchor
getTypeIndexID() - Method in class org.cleartk.timeml.type.DocumentCreationTime
getTypeIndexID() - Method in class org.cleartk.timeml.type.Event
getTypeIndexID() - Method in class org.cleartk.timeml.type.TemporalLink
getTypeIndexID() - Method in class org.cleartk.timeml.type.Text
getTypeIndexID() - Method in class org.cleartk.timeml.type.Time
getTypeIndexID() - Method in class org.cleartk.token.type.Sentence
getTypeIndexID() - Method in class org.cleartk.token.type.Subtoken
getTypeIndexID() - Method in class org.cleartk.token.type.Token
getTypeIndexID() - Method in class org.cleartk.util.type.Parenthetical
getURI(JCas) - Static method in class org.cleartk.util.ViewUriUtil: Get the primary Uniform Resource Identifier for this JCas and all its views.
getValue() - Method in class org.cleartk.test.util.type.Lemma: getter for value - gets
getValue(int) - Method in class org.cleartk.test.util.type.Lemma_Type
getValue() - Method in class org.cleartk.test.util.type.PosTag: getter for value - gets
getValue(int) - Method in class org.cleartk.test.util.type.PosTag_Type
getValue() - Method in class org.cleartk.timeml.type.Time: getter for value - gets
getValue(int) - Method in class org.cleartk.timeml.type.Time_Type
getValue() - Method in class org.cleartk.util.treebank.TreebankNode
getValueFromFunction() - Method in class org.cleartk.timeml.type.Time: getter for valueFromFunction - gets
getValueFromFunction(int) - Method in class org.cleartk.timeml.type.Time_Type
getXmiFile(JCas) - Method in class org.cleartk.util.ae.XmiWriter
getXmiFile(JCas) - Method in class org.cleartk.util.cr.linereader.LineReaderXmiWriter

H

handleLine(JCas, File, File, String) - Method in class org.cleartk.util.cr.linereader.DefaultLineHandler
handleLine(JCas, File, File, String) - Method in interface org.cleartk.util.cr.linereader.LineHandler
handleLine(JCas, File, File, String) - Method in class org.cleartk.util.cr.linereader.SimpleLineHandler
hasNext() - Method in class org.cleartk.util.cr.FilesCollectionReader
hasNext() - Method in class org.cleartk.util.cr.linereader.LineReader
hasNext() - Method in class org.cleartk.util.cr.UriCollectionReader
Header - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-test-util/target/jcasgen/typesystem.xml
Header() - Constructor for class org.cleartk.test.util.type.Header: Never called.
Header(int, TOP_Type) - Constructor for class org.cleartk.test.util.type.Header: Internal - constructor used by generator
Header(JCas) - Constructor for class org.cleartk.test.util.type.Header
Header(JCas, int, int) - Constructor for class org.cleartk.test.util.type.Header
Header_Type - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014
Header_Type(JCas, Type) - Constructor for class org.cleartk.test.util.type.Header_Type: initialize variables to correspond with Cas Type and Features

I

incompatibleTypeParameterAndType(Object, String, Type, Class<?>) - Static method in exception org.cleartk.util.CleartkInitializationException
incompatibleTypeParameters(Object, String, Type, Object, String, Type) - Static method in exception org.cleartk.util.CleartkInitializationException
inferPlainText(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: A treebank parse does not preserve whitespace information.
initialize(UimaContext) - Method in class org.cleartk.clearnlp.DependencyParser_ImplBase
initialize(UimaContext) - Method in class org.cleartk.clearnlp.MpAnalyzer_ImplBase
initialize(UimaContext) - Method in class org.cleartk.clearnlp.PosTagger_ImplBase
initialize(UimaContext) - Method in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
initialize(UimaContext) - Method in class org.cleartk.clearnlp.Tokenizer
initialize(UimaContext) - Method in class org.cleartk.clearnlp.Tokenizer_ImplBase
initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.annotation.CoveredTextAnnotationWriter
initialize(UimaContext) - Method in interface org.cleartk.util.ae.linewriter.AnnotationWriter
initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.block.BlankLineBlockWriter
initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.block.DocumentIdBlockWriter
initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.block.DoNothingBlockWriter
initialize(UimaContext) - Method in interface org.cleartk.util.ae.linewriter.BlockWriter
initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.LineWriter
initialize(UimaContext) - Method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
initialize(UimaContext) - Method in class org.cleartk.util.ae.PlainTextWriter
initialize(UimaContext) - Method in class org.cleartk.util.cr.FilesCollectionReader
initialize(UimaContext) - Method in class org.cleartk.util.cr.linereader.DefaultLineHandler
initialize(UimaContext) - Method in interface org.cleartk.util.cr.linereader.LineHandler
initialize(UimaContext) - Method in class org.cleartk.util.cr.linereader.LineReader
initialize(UimaContext) - Method in class org.cleartk.util.cr.linereader.SimpleLineHandler
initialize(UimaContext) - Method in class org.cleartk.util.cr.UriCollectionReader
initialize(UimaContext) - Method in class org.cleartk.util.cr.XReader
initTerminalNodes() - Method in class org.cleartk.util.treebank.TopTreebankNode
InputStreamHandler<T> - Class in org.cleartk.util: Copyright (c) 2011-2012, Technische Universität Darmstadt
All rights reserved.
invalidParameterValueSelectFrom(String, List<?>, Object) - Static method in exception org.cleartk.util.CleartkInitializationException
inverse() - Method in class org.cleartk.util.collection.CompressedStringBiMap
IoUtil - Class in org.cleartk.util: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
IoUtil() - Constructor for class org.cleartk.util.IoUtil
isAssignableFrom(Type, Type) - Static method in class org.cleartk.util.ReflectionUtil
isLeaf() - Method in class org.cleartk.util.treebank.TreebankNode

J

jCas - Variable in class org.cleartk.test.util.CleartkTestBase

L

LEAF_NODE_REGEX - Static variable in class org.cleartk.util.treebank.TreebankFormatParser: used to identify tokens in Penn Treebank labeled constituents.
Lemma - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-test-util/target/jcasgen/typesystem.xml
Lemma() - Constructor for class org.cleartk.test.util.type.Lemma: Never called.
Lemma(int, TOP_Type) - Constructor for class org.cleartk.test.util.type.Lemma: Internal - constructor used by generator
Lemma(JCas) - Constructor for class org.cleartk.test.util.type.Lemma
Lemma(JCas, int, int) - Constructor for class org.cleartk.test.util.type.Lemma
Lemma_Type - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014
Lemma_Type(JCas, Type) - Constructor for class org.cleartk.test.util.type.Lemma_Type: initialize variables to correspond with Cas Type and Features
Levenshtein - Class in org.cleartk.util.similarity: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
Levenshtein() - Constructor for class org.cleartk.util.similarity.Levenshtein
LicenseTestUtil - Class in org.cleartk.test.util: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
LicenseTestUtil() - Constructor for class org.cleartk.test.util.LicenseTestUtil
LineHandler - Interface in org.cleartk.util.cr.linereader: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
LineReader - Class in org.cleartk.util.cr.linereader: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
LineReader() - Constructor for class org.cleartk.util.cr.linereader.LineReader
LineReaderXmiWriter - Class in org.cleartk.util.cr.linereader: This is a simple annotator for writing out XMI files, used by the parsing examples.
LineReaderXmiWriter() - Constructor for class org.cleartk.util.cr.linereader.LineReaderXmiWriter
LineWriter<ANNOTATION_TYPE extends Annotation,BLOCK_TYPE extends Annotation> - Class in org.cleartk.util.ae.linewriter: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
LineWriter() - Constructor for class org.cleartk.util.ae.linewriter.LineWriter
logger - Variable in class org.cleartk.test.util.CleartkTestBase: A Logger instance associated with the class, intended for use by subclasses.
LONG_TEST_MESSAGE - Static variable in class org.cleartk.test.util.CleartkTestBase: A message indicating that the current test runs for a long time, and giving instructions how to skip it.
LONG_TESTS_PROPERTY_VALUE - Static variable in class org.cleartk.test.util.CleartkTestBase: Value for the CleartkTestBase.SKIP_TESTS_PROPERTY property that indicates that long-running tests should be disabled.

M

movePastWhiteSpaceChars(String, int) - Static method in class org.cleartk.util.treebank.TreebankFormatParser
MpAnalyzer - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
MpAnalyzer() - Constructor for class org.cleartk.clearnlp.MpAnalyzer
MpAnalyzer_ImplBase<TOKEN_TYPE extends Annotation> - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
MpAnalyzer_ImplBase(TokenOps<TOKEN_TYPE>) - Constructor for class org.cleartk.clearnlp.MpAnalyzer_ImplBase

N

NamedEntity - Class in org.cleartk.ne.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
NamedEntity() - Constructor for class org.cleartk.ne.type.NamedEntity: Never called.
NamedEntity(int, TOP_Type) - Constructor for class org.cleartk.ne.type.NamedEntity: Internal - constructor used by generator
NamedEntity(JCas) - Constructor for class org.cleartk.ne.type.NamedEntity
NamedEntity_Type - Class in org.cleartk.ne.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
NamedEntity_Type(JCas, Type) - Constructor for class org.cleartk.ne.type.NamedEntity_Type: initialize variables to correspond with Cas Type and Features
NamedEntityMention - Class in org.cleartk.ne.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
NamedEntityMention() - Constructor for class org.cleartk.ne.type.NamedEntityMention: Never called.
NamedEntityMention(int, TOP_Type) - Constructor for class org.cleartk.ne.type.NamedEntityMention: Internal - constructor used by generator
NamedEntityMention(JCas) - Constructor for class org.cleartk.ne.type.NamedEntityMention
NamedEntityMention(JCas, int, int) - Constructor for class org.cleartk.ne.type.NamedEntityMention
NamedEntityMention - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-test-util/target/jcasgen/typesystem.xml
NamedEntityMention() - Constructor for class org.cleartk.test.util.type.NamedEntityMention: Never called.
NamedEntityMention(int, TOP_Type) - Constructor for class org.cleartk.test.util.type.NamedEntityMention: Internal - constructor used by generator
NamedEntityMention(JCas) - Constructor for class org.cleartk.test.util.type.NamedEntityMention
NamedEntityMention(JCas, int, int) - Constructor for class org.cleartk.test.util.type.NamedEntityMention
NamedEntityMention_Type - Class in org.cleartk.ne.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
NamedEntityMention_Type(JCas, Type) - Constructor for class org.cleartk.ne.type.NamedEntityMention_Type: initialize variables to correspond with Cas Type and Features
NamedEntityMention_Type - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014
NamedEntityMention_Type(JCas, Type) - Constructor for class org.cleartk.test.util.type.NamedEntityMention_Type: initialize variables to correspond with Cas Type and Features
neitherParameterSet(String, Object, String, Object) - Static method in exception org.cleartk.util.CleartkInitializationException
newNode(JCas, int, int, String) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Create a leaf TreebankNode in a JCas.
newNode(JCas, String, TreebankNode...) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Create a branch TreebankNode in a JCas.
notExactlyOneParameterSet(String, Object, String, Object) - Static method in exception org.cleartk.util.CleartkInitializationException
notSingleCharacter(String, Object) - Static method in exception org.cleartk.util.CleartkInitializationException
numUrisCompleted - Variable in class org.cleartk.util.cr.UriCollectionReader

O

org.cleartk.clearnlp - package org.cleartk.clearnlp
org.cleartk.ne.type - package org.cleartk.ne.type
org.cleartk.score.type - package org.cleartk.score.type
org.cleartk.srl.type - package org.cleartk.srl.type
org.cleartk.syntax.constituent.type - package org.cleartk.syntax.constituent.type
org.cleartk.syntax.dependency.type - package org.cleartk.syntax.dependency.type
org.cleartk.test.util - package org.cleartk.test.util
org.cleartk.test.util.type - package org.cleartk.test.util.type
org.cleartk.timeml.type - package org.cleartk.timeml.type
org.cleartk.token.type - package org.cleartk.token.type
org.cleartk.util - package org.cleartk.util
org.cleartk.util.ae - package org.cleartk.util.ae
org.cleartk.util.ae.linewriter - package org.cleartk.util.ae.linewriter
org.cleartk.util.ae.linewriter.annotation - package org.cleartk.util.ae.linewriter.annotation
org.cleartk.util.ae.linewriter.block - package org.cleartk.util.ae.linewriter.block
org.cleartk.util.ae.parenthetical - package org.cleartk.util.ae.parenthetical
org.cleartk.util.collection - package org.cleartk.util.collection
org.cleartk.util.cr - package org.cleartk.util.cr
org.cleartk.util.cr.linereader - package org.cleartk.util.cr.linereader
org.cleartk.util.similarity - package org.cleartk.util.similarity
org.cleartk.util.treebank - package org.cleartk.util.treebank
org.cleartk.util.type - package org.cleartk.util.type
Orthography - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-test-util/target/jcasgen/typesystem.xml
Orthography() - Constructor for class org.cleartk.test.util.type.Orthography: Never called.
Orthography(int, TOP_Type) - Constructor for class org.cleartk.test.util.type.Orthography: Internal - constructor used by generator
Orthography(JCas) - Constructor for class org.cleartk.test.util.type.Orthography
Orthography(JCas, int, int) - Constructor for class org.cleartk.test.util.type.Orthography
Orthography_Type - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014
Orthography_Type(JCas, Type) - Constructor for class org.cleartk.test.util.type.Orthography_Type: initialize variables to correspond with Cas Type and Features
OS_LINUX - Static variable in class org.cleartk.util.PlatformDetection
OS_OSX - Static variable in class org.cleartk.util.PlatformDetection
OS_SOLARIS - Static variable in class org.cleartk.util.PlatformDetection
OS_WINDOWS - Static variable in class org.cleartk.util.PlatformDetection
outputDirectory - Variable in class org.cleartk.test.util.CleartkTestBase
outputDirectory - Variable in class org.cleartk.util.ae.XmiWriter
outputDirectoryName - Variable in class org.cleartk.test.util.CleartkTestBase
overlaps(Annotation, Annotation) - Static method in class org.cleartk.util.AnnotationUtil

P

PARAM_ANNOTATION_WRITER_CLASS_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_BLOCK_ANNOTATION_CLASS_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_BLOCK_WRITER_CLASS_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_COMMENT_SPECIFIERS - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_DELIMITER - Static variable in class org.cleartk.util.cr.linereader.SimpleLineHandler
PARAM_DICTIONARY_URI - Static variable in class org.cleartk.clearnlp.Tokenizer_ImplBase
PARAM_DIRECTORY - Static variable in class org.cleartk.util.cr.UriCollectionReader
PARAM_DIRECTORY_FILTER_CLASS - Static variable in class org.cleartk.util.cr.UriCollectionReader
PARAM_ENCODING - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_ENCODING - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_FILE_FILTER_CLASS - Static variable in class org.cleartk.util.cr.UriCollectionReader
PARAM_FILE_NAMES - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_FILE_OR_DIRECTORY_NAME - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_FILE_SUFFIX - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_FILES - Static variable in class org.cleartk.util.cr.UriCollectionReader
PARAM_IGNORE_SYSTEM_FILES - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_LANGUAGE - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_LANGUAGE - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_LANGUAGE_CODE - Static variable in class org.cleartk.clearnlp.DependencyParser_ImplBase
PARAM_LANGUAGE_CODE - Static variable in class org.cleartk.clearnlp.MpAnalyzer_ImplBase
PARAM_LANGUAGE_CODE - Static variable in class org.cleartk.clearnlp.PosTagger_ImplBase
PARAM_LANGUAGE_CODE - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
PARAM_LANGUAGE_CODE - Static variable in class org.cleartk.clearnlp.Tokenizer_ImplBase
PARAM_LEFT_PARENTHESIS - Static variable in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
PARAM_LINE_HANDLER_CLASS_NAME - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_MODEL_PATH - Static variable in class org.cleartk.clearnlp.PosTagger_ImplBase
PARAM_NAME_FILES_FILE_NAMES - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_OUTPUT_ANNOTATION_CLASS_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_OUTPUT_DIRECTORY - Static variable in class org.cleartk.util.ae.XmiWriter
PARAM_OUTPUT_DIRECTORY_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_OUTPUT_DIRECTORY_NAME - Static variable in class org.cleartk.util.ae.PlainTextWriter
PARAM_OUTPUT_FILE_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_PARENTHETICAL_TYPE_NAME - Static variable in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
PARAM_PARSER_MODEL_PATH - Static variable in class org.cleartk.clearnlp.DependencyParser_ImplBase
PARAM_PATTERNS - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_PRED_ID_MODEL_PATH - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
PARAM_RIGHT_PARENTHESIS - Static variable in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
PARAM_ROLESET_MODEL_PATH - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
PARAM_ROOT_FILE - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_SKIP_BLANK_LINES - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_SRL_MODEL_PATH - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
PARAM_SUFFIXES - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_SUFFIXES - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_URIS - Static variable in class org.cleartk.util.cr.UriCollectionReader
PARAM_VIEW_NAME - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_VIEW_NAME - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_WINDOW_CLASS - Static variable in class org.cleartk.clearnlp.DependencyParser_ImplBase
PARAM_WINDOW_CLASS - Static variable in class org.cleartk.clearnlp.MpAnalyzer_ImplBase
PARAM_WINDOW_CLASS - Static variable in class org.cleartk.clearnlp.PosTagger_ImplBase
PARAM_WINDOW_CLASS - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
PARAM_WINDOW_CLASS - Static variable in class org.cleartk.clearnlp.Tokenizer_ImplBase
PARAM_WINDOW_TYPE_NAME - Static variable in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
PARAM_XML_SCHEME - Static variable in class org.cleartk.util.ae.UriToXmiCasAnnotator
PARAM_XML_SCHEME - Static variable in class org.cleartk.util.cr.XReader
parameterLessThan(String, Object, Object) - Static method in exception org.cleartk.util.CleartkInitializationException
ParametersTestUtil - Class in org.cleartk.test.util: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
ParametersTestUtil() - Constructor for class org.cleartk.test.util.ParametersTestUtil
ParamUtil - Class in org.cleartk.util: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
ParamUtil() - Constructor for class org.cleartk.util.ParamUtil
parensMatch(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser
Parenthetical - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-test-util/target/jcasgen/typesystem.xml
Parenthetical() - Constructor for class org.cleartk.test.util.type.Parenthetical: Never called.
Parenthetical(int, TOP_Type) - Constructor for class org.cleartk.test.util.type.Parenthetical: Internal - constructor used by generator
Parenthetical(JCas) - Constructor for class org.cleartk.test.util.type.Parenthetical
Parenthetical(JCas, int, int) - Constructor for class org.cleartk.test.util.type.Parenthetical
Parenthetical - Class in org.cleartk.util.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Parenthetical() - Constructor for class org.cleartk.util.type.Parenthetical: Never called.
Parenthetical(int, TOP_Type) - Constructor for class org.cleartk.util.type.Parenthetical: Internal - constructor used by generator
Parenthetical(JCas) - Constructor for class org.cleartk.util.type.Parenthetical
Parenthetical(JCas, int, int) - Constructor for class org.cleartk.util.type.Parenthetical
Parenthetical_Type - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014
Parenthetical_Type(JCas, Type) - Constructor for class org.cleartk.test.util.type.Parenthetical_Type: initialize variables to correspond with Cas Type and Features
Parenthetical_Type - Class in org.cleartk.util.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Parenthetical_Type(JCas, Type) - Constructor for class org.cleartk.util.type.Parenthetical_Type: initialize variables to correspond with Cas Type and Features
ParentheticalAnnotator - Class in org.cleartk.util.ae.parenthetical: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
ParentheticalAnnotator() - Constructor for class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
parse(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: Create TreebankNode objects corresponding to the given TreeBank format parse, e.g.:
parse(String, String, int) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: Create TreebankNode objects corresponding to the given TreeBank format parse, e.g.:
parseDocument(String, int, String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: This method parses an entire documents worth of treebanked sentences.
PlainTextWriter - Class in org.cleartk.util.ae: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PlainTextWriter() - Constructor for class org.cleartk.util.ae.PlainTextWriter
PlatformDetection - Class in org.cleartk.util: Copyright (c) 2011-2012, Technische Universität Darmstadt
All rights reserved.
PlatformDetection() - Constructor for class org.cleartk.util.PlatformDetection
PosTag - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-test-util/target/jcasgen/typesystem.xml
PosTag() - Constructor for class org.cleartk.test.util.type.PosTag: Never called.
PosTag(int, TOP_Type) - Constructor for class org.cleartk.test.util.type.PosTag: Internal - constructor used by generator
PosTag(JCas) - Constructor for class org.cleartk.test.util.type.PosTag
PosTag(JCas, int, int) - Constructor for class org.cleartk.test.util.type.PosTag
PosTag_Type - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014
PosTag_Type(JCas, Type) - Constructor for class org.cleartk.test.util.type.PosTag_Type: initialize variables to correspond with Cas Type and Features
PosTagger - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
PosTagger() - Constructor for class org.cleartk.clearnlp.PosTagger
PosTagger_ImplBase<TOKEN_TYPE extends Annotation> - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
PosTagger_ImplBase(TokenOps<TOKEN_TYPE>) - Constructor for class org.cleartk.clearnlp.PosTagger_ImplBase
Predicate - Class in org.cleartk.srl.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Predicate() - Constructor for class org.cleartk.srl.type.Predicate: Never called.
Predicate(int, TOP_Type) - Constructor for class org.cleartk.srl.type.Predicate: Internal - constructor used by generator
Predicate(JCas) - Constructor for class org.cleartk.srl.type.Predicate
Predicate(JCas, int, int) - Constructor for class org.cleartk.srl.type.Predicate
Predicate_Type - Class in org.cleartk.srl.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Predicate_Type(JCas, Type) - Constructor for class org.cleartk.srl.type.Predicate_Type: initialize variables to correspond with Cas Type and Features
prepareString(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: This method was created simply as a way to clean up the parse string for a sentence in the treebank syntax.
print(PrintStream, TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: A "pretty print" of this node that may be useful for e.g.
process(JCas) - Method in class org.cleartk.clearnlp.DependencyParser_ImplBase
process(JCas) - Method in class org.cleartk.clearnlp.MpAnalyzer_ImplBase
process(JCas) - Method in class org.cleartk.clearnlp.PosTagger_ImplBase
process(JCas) - Method in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
process(JCas) - Method in class org.cleartk.clearnlp.Tokenizer_ImplBase
process(JCas) - Method in class org.cleartk.util.ae.linewriter.LineWriter
process(JCas) - Method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
process(JCas) - Method in class org.cleartk.util.ae.PlainTextWriter
process(JCas) - Method in class org.cleartk.util.ae.UriToDocumentTextAnnotator
process(JCas) - Method in class org.cleartk.util.ae.UriToXmiCasAnnotator
process(JCas) - Method in class org.cleartk.util.ae.XmiWriter
put(String, String) - Method in class org.cleartk.util.collection.CompressedStringBiMap
putAll(Map<? extends String, ? extends String>) - Method in class org.cleartk.util.collection.CompressedStringBiMap

R

read(Reader) - Method in class org.cleartk.util.collection.CompressedStringBiMap
ReflectionUtil() - Constructor for class org.cleartk.util.ReflectionUtil
ReflectionUtil.TypeArgumentDelegator - Interface in org.cleartk.util
RegexFileFilter - Class in org.cleartk.util.cr: Filters files using supplied regular expression(s).
RegexFileFilter(String) - Constructor for class org.cleartk.util.cr.RegexFileFilter: Construct a new regular expression filter.
RegexFileFilter(String, IOCase) - Constructor for class org.cleartk.util.cr.RegexFileFilter: Construct a new regular expression filter with the specified flags case sensitivity.
RegexFileFilter(String, int) - Constructor for class org.cleartk.util.cr.RegexFileFilter: Construct a new regular expression filter with the specified flags.
RegexFileFilter(Pattern) - Constructor for class org.cleartk.util.cr.RegexFileFilter: Construct a new regular expression filter for a compiled regular expression
rootFile - Variable in class org.cleartk.util.cr.FilesCollectionReader
run() - Method in class org.cleartk.util.InputStreamHandler: read data into buffer

S

ScoredAnnotation - Class in org.cleartk.score.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
ScoredAnnotation() - Constructor for class org.cleartk.score.type.ScoredAnnotation: Never called.
ScoredAnnotation(int, TOP_Type) - Constructor for class org.cleartk.score.type.ScoredAnnotation: Internal - constructor used by generator
ScoredAnnotation(JCas) - Constructor for class org.cleartk.score.type.ScoredAnnotation
ScoredAnnotation(JCas, int, int) - Constructor for class org.cleartk.score.type.ScoredAnnotation
ScoredAnnotation_Type - Class in org.cleartk.score.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
ScoredAnnotation_Type(JCas, Type) - Constructor for class org.cleartk.score.type.ScoredAnnotation_Type: initialize variables to correspond with Cas Type and Features
ScoredTOP - Class in org.cleartk.score.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
ScoredTOP() - Constructor for class org.cleartk.score.type.ScoredTOP: Never called.
ScoredTOP(int, TOP_Type) - Constructor for class org.cleartk.score.type.ScoredTOP: Internal - constructor used by generator
ScoredTOP(JCas) - Constructor for class org.cleartk.score.type.ScoredTOP
ScoredTOP_Type - Class in org.cleartk.score.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
ScoredTOP_Type(JCas, Type) - Constructor for class org.cleartk.score.type.ScoredTOP_Type: initialize variables to correspond with Cas Type and Features
selectFirstMatching(JCas, Class<T>, Annotation) - Static method in class org.cleartk.util.AnnotationUtil
selectHighestCoveredTreebankNode(JCas, Annotation) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Selects the highest TreebankNode in the parse tree that is at least partially covered by the given annotation.
selectHighestMatchingTreebankNode(JCas, Annotation) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Selects the highest TreebankNode in the parse tree that has the same span as the given annotation.
selectMatching(JCas, Class<T>, Annotation) - Static method in class org.cleartk.util.AnnotationUtil
selectMatchingLeaf(JCas, Annotation) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Selects a single TreebankNode leaf that has the same span as the given annotation.
selectNodes(JCas, Annotation) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
selectNodes(JCas, Annotation) - Method in interface org.cleartk.clearnlp.DependencyOps: Selects all dependency nodes within the annotation, excluding the root node.
selectRootNode(JCas, Annotation) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
selectRootNode(JCas, Annotation) - Method in interface org.cleartk.clearnlp.DependencyOps: Selects the single root node within the annotation.
selectTokens(JCas, Annotation) - Method in class org.cleartk.clearnlp.CleartkTokenOps
selectTokens(JCas, Annotation) - Method in interface org.cleartk.clearnlp.TokenOps
SemanticArgument - Class in org.cleartk.srl.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
SemanticArgument() - Constructor for class org.cleartk.srl.type.SemanticArgument: Never called.
SemanticArgument(int, TOP_Type) - Constructor for class org.cleartk.srl.type.SemanticArgument: Internal - constructor used by generator
SemanticArgument(JCas) - Constructor for class org.cleartk.srl.type.SemanticArgument
SemanticArgument(JCas, int, int) - Constructor for class org.cleartk.srl.type.SemanticArgument
SemanticArgument_Type - Class in org.cleartk.srl.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
SemanticArgument_Type(JCas, Type) - Constructor for class org.cleartk.srl.type.SemanticArgument_Type: initialize variables to correspond with Cas Type and Features
SemanticRoleLabeler() - Constructor for class org.cleartk.clearnlp.SemanticRoleLabeler
SemanticRoleLabeler_ImplBase<WINDOW_TYPE extends Annotation,TOKEN_TYPE extends Annotation,DEPENDENCY_NODE_TYPE extends TOP,DEPENDENCY_ROOT_NODE_TYPE extends DEPENDENCY_NODE_TYPE,DEPENDENCY_RELATION_TYPE extends TOP,ARGUMENT_TYPE extends TOP,PREDICATE_TYPE extends TOP> - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
SemanticRoleLabeler_ImplBase(TokenOps<TOKEN_TYPE>, DependencyOps<DEPENDENCY_NODE_TYPE, TOKEN_TYPE, DEPENDENCY_ROOT_NODE_TYPE, WINDOW_TYPE, DEPENDENCY_RELATION_TYPE>, SemanticRoleOps<ARGUMENT_TYPE, TOKEN_TYPE, PREDICATE_TYPE, TOKEN_TYPE>) - Constructor for class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
SemanticRoleOps<ARGUMENT_TYPE extends TOP,ARGUMENT_SPAN_TYPE extends Annotation,PREDICATE_TYPE extends TOP,PREDICATE_SPAN_TYPE extends Annotation> - Interface in org.cleartk.clearnlp: Defines common set of SRL data type operations used to convert output from semantic role labelers into the target type system
Sentence - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-test-util/target/jcasgen/typesystem.xml
Sentence() - Constructor for class org.cleartk.test.util.type.Sentence: Never called.
Sentence(int, TOP_Type) - Constructor for class org.cleartk.test.util.type.Sentence: Internal - constructor used by generator
Sentence(JCas) - Constructor for class org.cleartk.test.util.type.Sentence
Sentence(JCas, int, int) - Constructor for class org.cleartk.test.util.type.Sentence
Sentence - Class in org.cleartk.token.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Sentence() - Constructor for class org.cleartk.token.type.Sentence: Never called.
Sentence(int, TOP_Type) - Constructor for class org.cleartk.token.type.Sentence: Internal - constructor used by generator
Sentence(JCas) - Constructor for class org.cleartk.token.type.Sentence
Sentence(JCas, int, int) - Constructor for class org.cleartk.token.type.Sentence
Sentence_Type - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014
Sentence_Type(JCas, Type) - Constructor for class org.cleartk.test.util.type.Sentence_Type: initialize variables to correspond with Cas Type and Features
Sentence_Type - Class in org.cleartk.token.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Sentence_Type(JCas, Type) - Constructor for class org.cleartk.token.type.Sentence_Type: initialize variables to correspond with Cas Type and Features
setAceSource(String) - Method in class org.cleartk.ne.type.Ace2005Document: setter for aceSource - sets
setAceSource(int, String) - Method in class org.cleartk.ne.type.Ace2005Document_Type
setAceType(String) - Method in class org.cleartk.ne.type.Ace2005Document: setter for aceType - sets
setAceType(int, String) - Method in class org.cleartk.ne.type.Ace2005Document_Type
setAceUri(String) - Method in class org.cleartk.ne.type.Ace2005Document: setter for aceUri - sets
setAceUri(int, String) - Method in class org.cleartk.ne.type.Ace2005Document_Type
setAnchorTime(Time) - Method in class org.cleartk.timeml.type.Time: setter for anchorTime - sets
setAnchorTime(int, int) - Method in class org.cleartk.timeml.type.Time_Type
setAnnotation(Annotation) - Method in class org.cleartk.ne.type.NamedEntityMention: setter for annotation - sets
setAnnotation(int, int) - Method in class org.cleartk.ne.type.NamedEntityMention_Type
setAnnotation(Annotation) - Method in class org.cleartk.srl.type.Argument: setter for annotation - sets
setAnnotation(int, int) - Method in class org.cleartk.srl.type.Argument_Type
setAnnotation(Annotation) - Method in class org.cleartk.srl.type.Predicate: setter for annotation - sets
setAnnotation(int, int) - Method in class org.cleartk.srl.type.Predicate_Type
setArch(String) - Method in class org.cleartk.util.PlatformDetection
setArguments(FSArray) - Method in class org.cleartk.srl.type.Predicate: setter for arguments - sets
setArguments(int, Argument) - Method in class org.cleartk.srl.type.Predicate: indexed setter for arguments - sets an indexed value -
setArguments(int, int) - Method in class org.cleartk.srl.type.Predicate_Type
setArguments(int, int, int) - Method in class org.cleartk.srl.type.Predicate_Type
setAspect(String) - Method in class org.cleartk.timeml.type.Event: setter for aspect - sets
setAspect(int, String) - Method in class org.cleartk.timeml.type.Event_Type
setAuthors(FSArray) - Method in class org.cleartk.test.util.type.Header: setter for authors - sets
setAuthors(int, AuthorInfo) - Method in class org.cleartk.test.util.type.Header: indexed setter for authors - sets an indexed value -
setAuthors(int, int) - Method in class org.cleartk.test.util.type.Header_Type
setAuthors(int, int, int) - Method in class org.cleartk.test.util.type.Header_Type
setBaseForm(String) - Method in class org.cleartk.srl.type.Predicate: setter for baseForm - sets
setBaseForm(int, String) - Method in class org.cleartk.srl.type.Predicate_Type
setBeginPoint(String) - Method in class org.cleartk.timeml.type.Time: setter for beginPoint - sets
setBeginPoint(int, String) - Method in class org.cleartk.timeml.type.Time_Type
setCardinality(String) - Method in class org.cleartk.timeml.type.Event: setter for cardinality - sets
setCardinality(int, String) - Method in class org.cleartk.timeml.type.Event_Type
setChild(DependencyNode) - Method in class org.cleartk.syntax.dependency.type.DependencyRelation: setter for Child - sets
setChild(int, int) - Method in class org.cleartk.syntax.dependency.type.DependencyRelation_Type
setChildRelations(JCas, DependencyNode, List<DependencyRelation>) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
setChildRelations(JCas, NODE_TYPE, List<RELATION_TYPE>) - Method in interface org.cleartk.clearnlp.DependencyOps: Sets the head relations for a given node.
setChildRelations(FSArray) - Method in class org.cleartk.syntax.dependency.type.DependencyNode: setter for ChildRelations - sets
setChildRelations(int, DependencyRelation) - Method in class org.cleartk.syntax.dependency.type.DependencyNode: indexed setter for ChildRelations - sets an indexed value -
setChildRelations(int, int) - Method in class org.cleartk.syntax.dependency.type.DependencyNode_Type
setChildRelations(int, int, int) - Method in class org.cleartk.syntax.dependency.type.DependencyNode_Type
setChildren(FSArray) - Method in class org.cleartk.syntax.constituent.type.TreebankNode: setter for children - sets
setChildren(int, TreebankNode) - Method in class org.cleartk.syntax.constituent.type.TreebankNode: indexed setter for children - sets an indexed value -
setChildren(int, int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
setChildren(int, int, int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
setChildren(List<TreebankNode>) - Method in class org.cleartk.util.treebank.TreebankNode
setChunkType(String) - Method in class org.cleartk.ne.type.Chunk: setter for chunkType - sets
setChunkType(int, String) - Method in class org.cleartk.ne.type.Chunk_Type
setChunkType(String) - Method in class org.cleartk.srl.type.Chunk: setter for chunkType - sets
setChunkType(int, String) - Method in class org.cleartk.srl.type.Chunk_Type
setChunkType(String) - Method in class org.cleartk.test.util.type.Chunk: setter for chunkType - sets
setChunkType(int, String) - Method in class org.cleartk.test.util.type.Chunk_Type
setCoreferenceAnnotations(FSArray) - Method in class org.cleartk.srl.type.SemanticArgument: setter for coreferenceAnnotations - sets
setCoreferenceAnnotations(int, Annotation) - Method in class org.cleartk.srl.type.SemanticArgument: indexed setter for coreferenceAnnotations - sets an indexed value -
setCoreferenceAnnotations(int, int) - Method in class org.cleartk.srl.type.SemanticArgument_Type
setCoreferenceAnnotations(int, int, int) - Method in class org.cleartk.srl.type.SemanticArgument_Type
setDepRel(FSArray) - Method in class org.cleartk.test.util.type.Token: setter for depRel - sets
setDepRel(int, DependencyRelation) - Method in class org.cleartk.test.util.type.Token: indexed setter for depRel - sets an indexed value -
setDepRel(int, int) - Method in class org.cleartk.test.util.type.Token_Type
setDepRel(int, int, int) - Method in class org.cleartk.test.util.type.Token_Type
setEndPoint(String) - Method in class org.cleartk.timeml.type.Time: setter for endPoint - sets
setEndPoint(int, String) - Method in class org.cleartk.timeml.type.Time_Type
setEntityClass(String) - Method in class org.cleartk.ne.type.NamedEntity: setter for entityClass - sets
setEntityClass(int, String) - Method in class org.cleartk.ne.type.NamedEntity_Type
setEntityId(String) - Method in class org.cleartk.ne.type.NamedEntity: setter for entityId - sets
setEntityId(int, String) - Method in class org.cleartk.ne.type.NamedEntity_Type
setEntitySubtype(String) - Method in class org.cleartk.ne.type.NamedEntity: setter for entitySubtype - sets
setEntitySubtype(int, String) - Method in class org.cleartk.ne.type.NamedEntity_Type
setEntityType(String) - Method in class org.cleartk.ne.type.NamedEntity: setter for entityType - sets
setEntityType(int, String) - Method in class org.cleartk.ne.type.NamedEntity_Type
setEventClass(String) - Method in class org.cleartk.timeml.type.Event: setter for eventClass - sets
setEventClass(int, String) - Method in class org.cleartk.timeml.type.Event_Type
setEventInstanceID(String) - Method in class org.cleartk.timeml.type.Event: setter for eventInstanceID - sets
setEventInstanceID(int, String) - Method in class org.cleartk.timeml.type.Event_Type
setFeature(String) - Method in class org.cleartk.srl.type.SemanticArgument: setter for feature - sets
setFeature(int, String) - Method in class org.cleartk.srl.type.SemanticArgument_Type
setFrameSet(String) - Method in class org.cleartk.srl.type.Predicate: setter for frameSet - sets
setFrameSet(int, String) - Method in class org.cleartk.srl.type.Predicate_Type
setFreq(String) - Method in class org.cleartk.timeml.type.Time: setter for freq - sets
setFreq(int, String) - Method in class org.cleartk.timeml.type.Time_Type
setFunctionInDocument(String) - Method in class org.cleartk.timeml.type.Time: setter for functionInDocument - sets
setFunctionInDocument(int, String) - Method in class org.cleartk.timeml.type.Time_Type
setHead(Annotation) - Method in class org.cleartk.ne.type.NamedEntityMention: setter for head - sets
setHead(int, int) - Method in class org.cleartk.ne.type.NamedEntityMention_Type
setHead(DependencyNode) - Method in class org.cleartk.syntax.dependency.type.DependencyRelation: setter for Head - sets
setHead(int, int) - Method in class org.cleartk.syntax.dependency.type.DependencyRelation_Type
setHead(Token) - Method in class org.cleartk.test.util.type.DependencyRelation: setter for head - sets
setHead(int, int) - Method in class org.cleartk.test.util.type.DependencyRelation_Type
setHeadRelations(JCas, DependencyNode, List<DependencyRelation>) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
setHeadRelations(JCas, NODE_TYPE, List<RELATION_TYPE>) - Method in interface org.cleartk.clearnlp.DependencyOps: Sets the head relations for a given node.
setHeadRelations(FSArray) - Method in class org.cleartk.syntax.dependency.type.DependencyNode: setter for HeadRelations - sets
setHeadRelations(int, DependencyRelation) - Method in class org.cleartk.syntax.dependency.type.DependencyNode: indexed setter for HeadRelations - sets an indexed value -
setHeadRelations(int, int) - Method in class org.cleartk.syntax.dependency.type.DependencyNode_Type
setHeadRelations(int, int, int) - Method in class org.cleartk.syntax.dependency.type.DependencyNode_Type
setHyphenTag(String) - Method in class org.cleartk.srl.type.SemanticArgument: setter for hyphenTag - sets
setHyphenTag(int, String) - Method in class org.cleartk.srl.type.SemanticArgument_Type
setId(String) - Method in class org.cleartk.timeml.type.Anchor: setter for id - sets
setId(int, String) - Method in class org.cleartk.timeml.type.Anchor_Type
setId(String) - Method in class org.cleartk.timeml.type.TemporalLink: setter for id - sets
setId(int, String) - Method in class org.cleartk.timeml.type.TemporalLink_Type
setIndex(int) - Method in class org.cleartk.syntax.constituent.type.TerminalTreebankNode: setter for index - sets This value is the same as the index of this node in the top nodes list of terminals.
setIndex(int, int) - Method in class org.cleartk.syntax.constituent.type.TerminalTreebankNode_Type
setLabel(String) - Method in class org.cleartk.srl.type.SemanticArgument: setter for label - sets
setLabel(int, String) - Method in class org.cleartk.srl.type.SemanticArgument_Type
setLabel(String) - Method in class org.cleartk.test.util.type.DependencyRelation: setter for label - sets
setLabel(int, String) - Method in class org.cleartk.test.util.type.DependencyRelation_Type
setLanguage(String) - Method in class org.cleartk.test.util.type.PosTag: setter for language - sets
setLanguage(int, String) - Method in class org.cleartk.test.util.type.PosTag_Type
setLastName(String) - Method in class org.cleartk.test.util.type.AuthorInfo: setter for lastName - sets
setLastName(int, String) - Method in class org.cleartk.test.util.type.AuthorInfo_Type
setLeaf(boolean) - Method in class org.cleartk.syntax.constituent.type.TreebankNode: setter for leaf - sets
setLeaf(int, boolean) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
setLeaf(boolean) - Method in class org.cleartk.util.treebank.TreebankNode
setLemma(JCas, Token, String) - Method in class org.cleartk.clearnlp.CleartkTokenOps
setLemma(JCas, TOKEN_TYPE, String) - Method in interface org.cleartk.clearnlp.TokenOps
setLemma(Lemma) - Method in class org.cleartk.test.util.type.Token: setter for lemma - sets
setLemma(int, int) - Method in class org.cleartk.test.util.type.Token_Type
setLemma(String) - Method in class org.cleartk.token.type.Token: setter for lemma - sets
setLemma(int, String) - Method in class org.cleartk.token.type.Token_Type
setMentionedEntity(NamedEntity) - Method in class org.cleartk.ne.type.NamedEntityMention: setter for mentionedEntity - sets
setMentionedEntity(int, int) - Method in class org.cleartk.ne.type.NamedEntityMention_Type
setMentionId(String) - Method in class org.cleartk.ne.type.NamedEntityMention: setter for mentionId - sets
setMentionId(int, String) - Method in class org.cleartk.ne.type.NamedEntityMention_Type
setMentions(FSArray) - Method in class org.cleartk.ne.type.NamedEntity: setter for mentions - sets
setMentions(int, NamedEntityMention) - Method in class org.cleartk.ne.type.NamedEntity: indexed setter for mentions - sets an indexed value -
setMentions(int, int) - Method in class org.cleartk.ne.type.NamedEntity_Type
setMentions(int, int, int) - Method in class org.cleartk.ne.type.NamedEntity_Type
setMentionType(String) - Method in class org.cleartk.ne.type.NamedEntityMention: setter for mentionType - sets
setMentionType(int, String) - Method in class org.cleartk.ne.type.NamedEntityMention_Type
setMod(String) - Method in class org.cleartk.timeml.type.Time: setter for mod - sets
setMod(int, String) - Method in class org.cleartk.timeml.type.Time_Type
setModality(String) - Method in class org.cleartk.timeml.type.Event: setter for modality - sets
setModality(int, String) - Method in class org.cleartk.timeml.type.Event_Type
setNodeTags(StringArray) - Method in class org.cleartk.syntax.constituent.type.TreebankNode: setter for nodeTags - sets
setNodeTags(int, String) - Method in class org.cleartk.syntax.constituent.type.TreebankNode: indexed setter for nodeTags - sets an indexed value -
setNodeTags(int, int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
setNodeTags(int, int, String) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
setNodeType(String) - Method in class org.cleartk.syntax.constituent.type.TreebankNode: setter for nodeType - sets
setNodeType(int, String) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
setNodeValue(String) - Method in class org.cleartk.syntax.constituent.type.TreebankNode: setter for nodeValue - sets
setNodeValue(int, String) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
setOrthogr(Orthography) - Method in class org.cleartk.test.util.type.Token: setter for orthogr - sets
setOrthogr(int, int) - Method in class org.cleartk.test.util.type.Token_Type
setOs(String) - Method in class org.cleartk.util.PlatformDetection
setOutputDirectoryName(String) - Method in class org.cleartk.util.ae.PlainTextWriter
setParent(TreebankNode) - Method in class org.cleartk.syntax.constituent.type.TreebankNode: setter for parent - sets
setParent(int, int) - Method in class org.cleartk.syntax.constituent.type.TreebankNode_Type
setParent(TreebankNode) - Method in class org.cleartk.util.treebank.TreebankNode
setParseBegin(int) - Method in class org.cleartk.util.treebank.TreebankNode
setParseEnd(int) - Method in class org.cleartk.util.treebank.TreebankNode
setPolarity(String) - Method in class org.cleartk.timeml.type.Event: setter for polarity - sets
setPolarity(int, String) - Method in class org.cleartk.timeml.type.Event_Type
setPos(JCas, Token, String) - Method in class org.cleartk.clearnlp.CleartkTokenOps
setPos(JCas, TOKEN_TYPE, String) - Method in interface org.cleartk.clearnlp.TokenOps
setPos(String) - Method in class org.cleartk.test.util.type.Token: setter for pos - sets
setPos(int, String) - Method in class org.cleartk.test.util.type.Token_Type
setPos(String) - Method in class org.cleartk.timeml.type.Event: setter for pos - sets
setPos(int, String) - Method in class org.cleartk.timeml.type.Event_Type
setPos(String) - Method in class org.cleartk.token.type.Token: setter for pos - sets
setPos(int, String) - Method in class org.cleartk.token.type.Token_Type
setPosition(int) - Method in class org.cleartk.token.type.Subtoken: setter for position - sets
setPosition(int, int) - Method in class org.cleartk.token.type.Subtoken_Type
setPosTag(FSArray) - Method in class org.cleartk.test.util.type.Token: setter for posTag - sets
setPosTag(int, PosTag) - Method in class org.cleartk.test.util.type.Token: indexed setter for posTag - sets an indexed value -
setPosTag(int, int) - Method in class org.cleartk.test.util.type.Token_Type
setPosTag(int, int, int) - Method in class org.cleartk.test.util.type.Token_Type
setPredicateArguments(JCas, Predicate, List<SemanticArgument>) - Method in class org.cleartk.clearnlp.CleartkSemanticRoleOps
setPredicateArguments(JCas, PREDICATE_TYPE, List<ARGUMENT_TYPE>) - Method in interface org.cleartk.clearnlp.SemanticRoleOps
setPreposition(String) - Method in class org.cleartk.srl.type.SemanticArgument: setter for preposition - sets
setPreposition(int, String) - Method in class org.cleartk.srl.type.SemanticArgument_Type
setProjective(boolean) - Method in class org.cleartk.test.util.type.DependencyRelation: setter for projective - sets
setProjective(int, boolean) - Method in class org.cleartk.test.util.type.DependencyRelation_Type
setPropTxt(String) - Method in class org.cleartk.srl.type.Predicate: setter for propTxt - sets
setPropTxt(int, String) - Method in class org.cleartk.srl.type.Predicate_Type
setPropTxt(String) - Method in class org.cleartk.srl.type.SemanticArgument: setter for propTxt - sets
setPropTxt(int, String) - Method in class org.cleartk.srl.type.SemanticArgument_Type
setQuant(String) - Method in class org.cleartk.timeml.type.Time: setter for quant - sets
setQuant(int, String) - Method in class org.cleartk.timeml.type.Time_Type
setRelation(String) - Method in class org.cleartk.syntax.dependency.type.DependencyRelation: setter for Relation - sets
setRelation(int, String) - Method in class org.cleartk.syntax.dependency.type.DependencyRelation_Type
setRelationType(String) - Method in class org.cleartk.timeml.type.TemporalLink: setter for relationType - sets
setRelationType(int, String) - Method in class org.cleartk.timeml.type.TemporalLink_Type
setScore(double) - Method in class org.cleartk.score.type.ScoredAnnotation: setter for score - sets
setScore(int, double) - Method in class org.cleartk.score.type.ScoredAnnotation_Type
setScore(double) - Method in class org.cleartk.score.type.ScoredTOP: setter for score - sets
setScore(int, double) - Method in class org.cleartk.score.type.ScoredTOP_Type
setSentence(Sentence) - Method in class org.cleartk.srl.type.Predicate: setter for sentence - sets
setSentence(int, int) - Method in class org.cleartk.srl.type.Predicate_Type
setSignalID(String) - Method in class org.cleartk.timeml.type.Event: setter for signalID - sets
setSignalID(int, String) - Method in class org.cleartk.timeml.type.Event_Type
setSignalID(String) - Method in class org.cleartk.timeml.type.TemporalLink: setter for signalID - sets
setSignalID(int, String) - Method in class org.cleartk.timeml.type.TemporalLink_Type
setSource(Anchor) - Method in class org.cleartk.timeml.type.TemporalLink: setter for source - sets
setSource(int, int) - Method in class org.cleartk.timeml.type.TemporalLink_Type
setStem(String) - Method in class org.cleartk.timeml.type.Event: setter for stem - sets
setStem(int, String) - Method in class org.cleartk.timeml.type.Event_Type
setStem(String) - Method in class org.cleartk.token.type.Token: setter for stem - sets
setStem(int, String) - Method in class org.cleartk.token.type.Token_Type
setTags(String[]) - Method in class org.cleartk.util.treebank.TreebankNode
setTarget(Anchor) - Method in class org.cleartk.timeml.type.TemporalLink: setter for target - sets
setTarget(int, int) - Method in class org.cleartk.timeml.type.TemporalLink_Type
setTemporalFunction(String) - Method in class org.cleartk.timeml.type.Time: setter for temporalFunction - sets
setTemporalFunction(int, String) - Method in class org.cleartk.timeml.type.Time_Type
setTense(String) - Method in class org.cleartk.timeml.type.Event: setter for tense - sets
setTense(int, String) - Method in class org.cleartk.timeml.type.Event_Type
setTerminals(FSArray) - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode: setter for terminals - sets
setTerminals(int, TerminalTreebankNode) - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode: indexed setter for terminals - sets an indexed value -
setTerminals(int, int) - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode_Type
setTerminals(int, int, int) - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode_Type
setTestFS(StringArray) - Method in class org.cleartk.test.util.type.Lemma: setter for testFS - sets
setTestFS(int, String) - Method in class org.cleartk.test.util.type.Lemma: indexed setter for testFS - sets an indexed value -
setTestFS(int, int) - Method in class org.cleartk.test.util.type.Lemma_Type
setTestFS(int, int, String) - Method in class org.cleartk.test.util.type.Lemma_Type
setText(String) - Method in class org.cleartk.util.treebank.TreebankNode
setTextBegin(int) - Method in class org.cleartk.util.treebank.TreebankNode: the offset of the plain text for this node with respect to the sentence text adjusted by the textOffset passed into the parse method.
setTextEnd(int) - Method in class org.cleartk.util.treebank.TreebankNode
setTimeType(String) - Method in class org.cleartk.timeml.type.Time: setter for timeType - sets
setTimeType(int, String) - Method in class org.cleartk.timeml.type.Time_Type
setTokenIndex(int) - Method in class org.cleartk.syntax.constituent.type.TerminalTreebankNode: setter for tokenIndex - sets The value of this corresponds to the nth token in the sentence that this terminal corresponds to.
setTokenIndex(int, int) - Method in class org.cleartk.syntax.constituent.type.TerminalTreebankNode_Type
setTopNode(TopTreebankNode) - Method in class org.cleartk.util.treebank.TreebankNode
setTreebankParse(String) - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode: setter for treebankParse - sets
setTreebankParse(int, String) - Method in class org.cleartk.syntax.constituent.type.TopTreebankNode_Type
setTreebankParse(String) - Method in class org.cleartk.util.treebank.TopTreebankNode
setType(String) - Method in class org.cleartk.util.treebank.TreebankNode
setUp() - Method in class org.cleartk.test.util.CleartkTestBase
setUp() - Method in class org.cleartk.test.util.DefaultTestBase
setURI(CAS, URI) - Static method in class org.cleartk.util.ViewUriUtil: Set the primary Uniform Resource Identifier for this CAS and all its views.
setURI(JCas, URI) - Static method in class org.cleartk.util.ViewUriUtil: Set the primary Uniform Resource Identifier for this JCas and all its views.
setValue(String) - Method in class org.cleartk.test.util.type.Lemma: setter for value - sets
setValue(int, String) - Method in class org.cleartk.test.util.type.Lemma_Type
setValue(String) - Method in class org.cleartk.test.util.type.PosTag: setter for value - sets
setValue(int, String) - Method in class org.cleartk.test.util.type.PosTag_Type
setValue(String) - Method in class org.cleartk.timeml.type.Time: setter for value - sets
setValue(int, String) - Method in class org.cleartk.timeml.type.Time_Type
setValue(String) - Method in class org.cleartk.util.treebank.TreebankNode
setValueFromFunction(String) - Method in class org.cleartk.timeml.type.Time: setter for valueFromFunction - sets
setValueFromFunction(int, String) - Method in class org.cleartk.timeml.type.Time_Type
similarity(String, String) - Static method in class org.cleartk.util.similarity.Levenshtein
SimpleLineHandler() - Constructor for class org.cleartk.util.cr.linereader.SimpleLineHandler
size(Annotation) - Static method in class org.cleartk.util.AnnotationUtil
SKIP_TESTS_PROPERTY - Static variable in class org.cleartk.test.util.CleartkTestBase: The name of the property that can be set to skip some tests.
sort(List<T>) - Static method in class org.cleartk.util.AnnotationUtil
splitSentences(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: Generally speaking, we expect one treebanked sentence per line.
stringToUri - Variable in class org.cleartk.util.cr.UriCollectionReader
Subtoken - Class in org.cleartk.token.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Subtoken() - Constructor for class org.cleartk.token.type.Subtoken: Never called.
Subtoken(int, TOP_Type) - Constructor for class org.cleartk.token.type.Subtoken: Internal - constructor used by generator
Subtoken(JCas) - Constructor for class org.cleartk.token.type.Subtoken
Subtoken(JCas, int, int) - Constructor for class org.cleartk.token.type.Subtoken
Subtoken_Type - Class in org.cleartk.token.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Subtoken_Type(JCas, Type) - Constructor for class org.cleartk.token.type.Subtoken_Type: initialize variables to correspond with Cas Type and Features

T

TemporalLink - Class in org.cleartk.timeml.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
TemporalLink() - Constructor for class org.cleartk.timeml.type.TemporalLink: Never called.
TemporalLink(int, TOP_Type) - Constructor for class org.cleartk.timeml.type.TemporalLink: Internal - constructor used by generator
TemporalLink(JCas) - Constructor for class org.cleartk.timeml.type.TemporalLink
TemporalLink(JCas, int, int) - Constructor for class org.cleartk.timeml.type.TemporalLink
TemporalLink_Type - Class in org.cleartk.timeml.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
TemporalLink_Type(JCas, Type) - Constructor for class org.cleartk.timeml.type.TemporalLink_Type: initialize variables to correspond with Cas Type and Features
TerminalTreebankNode - Class in org.cleartk.syntax.constituent.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
TerminalTreebankNode() - Constructor for class org.cleartk.syntax.constituent.type.TerminalTreebankNode: Never called.
TerminalTreebankNode(int, TOP_Type) - Constructor for class org.cleartk.syntax.constituent.type.TerminalTreebankNode: Internal - constructor used by generator
TerminalTreebankNode(JCas) - Constructor for class org.cleartk.syntax.constituent.type.TerminalTreebankNode
TerminalTreebankNode(JCas, int, int) - Constructor for class org.cleartk.syntax.constituent.type.TerminalTreebankNode
TerminalTreebankNode_Type - Class in org.cleartk.syntax.constituent.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
TerminalTreebankNode_Type(JCas, Type) - Constructor for class org.cleartk.syntax.constituent.type.TerminalTreebankNode_Type: initialize variables to correspond with Cas Type and Features
testDescriptorFiles(String) - Static method in class org.cleartk.test.util.LicenseTestUtil
testFiles(String, IOFileFilter) - Static method in class org.cleartk.test.util.LicenseTestUtil
testFiles(String, IOFileFilter, List<String>, List<String>) - Static method in class org.cleartk.test.util.LicenseTestUtil
testFilesGPL(String, IOFileFilter) - Static method in class org.cleartk.test.util.LicenseTestUtil
testFilesGPL(String, IOFileFilter, List<String>, List<String>) - Static method in class org.cleartk.test.util.LicenseTestUtil
testJavaFiles(String) - Static method in class org.cleartk.test.util.LicenseTestUtil
testJavaFiles(String, List<String>, List<String>) - Static method in class org.cleartk.test.util.LicenseTestUtil
testJavaFilesGPL(String) - Static method in class org.cleartk.test.util.LicenseTestUtil
testJavaFilesGPL(String, List<String>, List<String>) - Static method in class org.cleartk.test.util.LicenseTestUtil
testNoDescriptorsInSrc(String) - Static method in class org.cleartk.test.util.DescriptorTestUtil
testParameterDefinitions(String, String...) - Static method in class org.cleartk.test.util.ParametersTestUtil
testParameterDefinitions(Iterator<File>) - Static method in class org.cleartk.test.util.ParametersTestUtil
testType(JCas, TOP) - Static method in class org.cleartk.test.util.TypeTestUtil
testTypeSystem(JCas) - Static method in class org.cleartk.test.util.TypeTestUtil
Text - Class in org.cleartk.timeml.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Text() - Constructor for class org.cleartk.timeml.type.Text: Never called.
Text(int, TOP_Type) - Constructor for class org.cleartk.timeml.type.Text: Internal - constructor used by generator
Text(JCas) - Constructor for class org.cleartk.timeml.type.Text
Text(JCas, int, int) - Constructor for class org.cleartk.timeml.type.Text
Text_Type - Class in org.cleartk.timeml.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Text_Type(JCas, Type) - Constructor for class org.cleartk.timeml.type.Text_Type: initialize variables to correspond with Cas Type and Features
Time - Class in org.cleartk.timeml.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Time() - Constructor for class org.cleartk.timeml.type.Time: Never called.
Time(int, TOP_Type) - Constructor for class org.cleartk.timeml.type.Time: Internal - constructor used by generator
Time(JCas) - Constructor for class org.cleartk.timeml.type.Time
Time(JCas, int, int) - Constructor for class org.cleartk.timeml.type.Time
Time_Type - Class in org.cleartk.timeml.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Time_Type(JCas, Type) - Constructor for class org.cleartk.timeml.type.Time_Type: initialize variables to correspond with Cas Type and Features
Token - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-test-util/target/jcasgen/typesystem.xml
Token() - Constructor for class org.cleartk.test.util.type.Token: Never called.
Token(int, TOP_Type) - Constructor for class org.cleartk.test.util.type.Token: Internal - constructor used by generator
Token(JCas) - Constructor for class org.cleartk.test.util.type.Token
Token(JCas, int, int) - Constructor for class org.cleartk.test.util.type.Token
Token - Class in org.cleartk.token.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
Token() - Constructor for class org.cleartk.token.type.Token: Never called.
Token(int, TOP_Type) - Constructor for class org.cleartk.token.type.Token: Internal - constructor used by generator
Token(JCas) - Constructor for class org.cleartk.token.type.Token
Token(JCas, int, int) - Constructor for class org.cleartk.token.type.Token
Token_Type - Class in org.cleartk.test.util.type: Updated by JCasGen Wed May 07 09:06:03 EDT 2014
Token_Type(JCas, Type) - Constructor for class org.cleartk.test.util.type.Token_Type: initialize variables to correspond with Cas Type and Features
Token_Type - Class in org.cleartk.token.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
Token_Type(JCas, Type) - Constructor for class org.cleartk.token.type.Token_Type: initialize variables to correspond with Cas Type and Features
tokenBuilder - Variable in class org.cleartk.test.util.DefaultTestBase
Tokenizer - Class in org.cleartk.clearnlp
Tokenizer() - Constructor for class org.cleartk.clearnlp.Tokenizer
Tokenizer_ImplBase() - Constructor for class org.cleartk.clearnlp.Tokenizer_ImplBase
TokenOps<TOKEN_TYPE> - Interface in org.cleartk.clearnlp: Defines common set of token data type operations used to convert to and query from the target type system
TopDependencyNode - Class in org.cleartk.syntax.dependency.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
TopDependencyNode() - Constructor for class org.cleartk.syntax.dependency.type.TopDependencyNode: Never called.
TopDependencyNode(int, TOP_Type) - Constructor for class org.cleartk.syntax.dependency.type.TopDependencyNode: Internal - constructor used by generator
TopDependencyNode(JCas) - Constructor for class org.cleartk.syntax.dependency.type.TopDependencyNode
TopDependencyNode(JCas, int, int) - Constructor for class org.cleartk.syntax.dependency.type.TopDependencyNode
TopDependencyNode_Type - Class in org.cleartk.syntax.dependency.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
TopDependencyNode_Type(JCas, Type) - Constructor for class org.cleartk.syntax.dependency.type.TopDependencyNode_Type: initialize variables to correspond with Cas Type and Features
TopTreebankNode - Class in org.cleartk.syntax.constituent.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
TopTreebankNode() - Constructor for class org.cleartk.syntax.constituent.type.TopTreebankNode: Never called.
TopTreebankNode(int, TOP_Type) - Constructor for class org.cleartk.syntax.constituent.type.TopTreebankNode: Internal - constructor used by generator
TopTreebankNode(JCas) - Constructor for class org.cleartk.syntax.constituent.type.TopTreebankNode
TopTreebankNode(JCas, int, int) - Constructor for class org.cleartk.syntax.constituent.type.TopTreebankNode
TopTreebankNode() - Constructor for class org.cleartk.util.treebank.TopTreebankNode
TopTreebankNode_Type - Class in org.cleartk.syntax.constituent.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
TopTreebankNode_Type(JCas, Type) - Constructor for class org.cleartk.syntax.constituent.type.TopTreebankNode_Type: initialize variables to correspond with Cas Type and Features
toString() - Method in class org.cleartk.util.PlatformDetection
toTreebankString(TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Format the TreebankNode as a Penn-Treebank-style parenthesized string.
TreebankFormatParser - Class in org.cleartk.util.treebank: This class was written to be a stand alone parser for the Penn Treebank data.
TreebankFormatParser() - Constructor for class org.cleartk.util.treebank.TreebankFormatParser
TreebankNode - Class in org.cleartk.syntax.constituent.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014 XML source: /Users/bethard/Code/cleartk/target/checkout/cleartk-type-system/target/jcasgen/typesystem.xml
TreebankNode() - Constructor for class org.cleartk.syntax.constituent.type.TreebankNode: Never called.
TreebankNode(int, TOP_Type) - Constructor for class org.cleartk.syntax.constituent.type.TreebankNode: Internal - constructor used by generator
TreebankNode(JCas) - Constructor for class org.cleartk.syntax.constituent.type.TreebankNode
TreebankNode(JCas, int, int) - Constructor for class org.cleartk.syntax.constituent.type.TreebankNode
TreebankNode() - Constructor for class org.cleartk.util.treebank.TreebankNode
TreebankNode_Type - Class in org.cleartk.syntax.constituent.type: Updated by JCasGen Wed May 07 09:15:21 EDT 2014
TreebankNode_Type(JCas, Type) - Constructor for class org.cleartk.syntax.constituent.type.TreebankNode_Type: initialize variables to correspond with Cas Type and Features
TreebankNodeUtil() - Constructor for class org.cleartk.syntax.constituent.type.TreebankNodeUtil
TreebankNodeUtil.TreebankNodePath - Class in org.cleartk.syntax.constituent.type: Representation of a path from one TreebankNode to another, via a common ancestor in the tree.
TreebankNodeUtil.TreebankNodePath(TreebankNode, List<TreebankNode>, List<TreebankNode>) - Constructor for class org.cleartk.syntax.constituent.type.TreebankNodeUtil.TreebankNodePath
type - Static variable in class org.cleartk.ne.type.Ace2005Document
type - Static variable in class org.cleartk.ne.type.Chunk
type - Static variable in class org.cleartk.ne.type.GazetteerNamedEntityMention
type - Static variable in class org.cleartk.ne.type.NamedEntity
type - Static variable in class org.cleartk.ne.type.NamedEntityMention
type - Static variable in class org.cleartk.score.type.ScoredAnnotation
type - Static variable in class org.cleartk.score.type.ScoredTOP
type - Static variable in class org.cleartk.srl.type.Argument
type - Static variable in class org.cleartk.srl.type.Chunk
type - Static variable in class org.cleartk.srl.type.Predicate
type - Static variable in class org.cleartk.srl.type.SemanticArgument
type - Static variable in class org.cleartk.syntax.constituent.type.TerminalTreebankNode
type - Static variable in class org.cleartk.syntax.constituent.type.TopTreebankNode
type - Static variable in class org.cleartk.syntax.constituent.type.TreebankNode
type - Static variable in class org.cleartk.syntax.dependency.type.DependencyNode
type - Static variable in class org.cleartk.syntax.dependency.type.DependencyRelation
type - Static variable in class org.cleartk.syntax.dependency.type.TopDependencyNode
type - Static variable in class org.cleartk.test.util.type.AuthorInfo
type - Static variable in class org.cleartk.test.util.type.Chunk
type - Static variable in class org.cleartk.test.util.type.DependencyRelation
type - Static variable in class org.cleartk.test.util.type.Header
type - Static variable in class org.cleartk.test.util.type.Lemma
type - Static variable in class org.cleartk.test.util.type.NamedEntityMention
type - Static variable in class org.cleartk.test.util.type.Orthography
type - Static variable in class org.cleartk.test.util.type.Parenthetical
type - Static variable in class org.cleartk.test.util.type.PosTag
type - Static variable in class org.cleartk.test.util.type.Sentence
type - Static variable in class org.cleartk.test.util.type.Token
type - Static variable in class org.cleartk.timeml.type.Anchor
type - Static variable in class org.cleartk.timeml.type.DocumentCreationTime
type - Static variable in class org.cleartk.timeml.type.Event
type - Static variable in class org.cleartk.timeml.type.TemporalLink
type - Static variable in class org.cleartk.timeml.type.Text
type - Static variable in class org.cleartk.timeml.type.Time
type - Static variable in class org.cleartk.token.type.Sentence
type - Static variable in class org.cleartk.token.type.Subtoken
type - Static variable in class org.cleartk.token.type.Token
type - Static variable in class org.cleartk.util.type.Parenthetical
TYPE_REGEX - Static variable in class org.cleartk.util.treebank.TreebankFormatParser: used to identify the type of a consituent in a treebank parse tree.
typeIndexID - Static variable in class org.cleartk.ne.type.Ace2005Document
typeIndexID - Static variable in class org.cleartk.ne.type.Ace2005Document_Type
typeIndexID - Static variable in class org.cleartk.ne.type.Chunk
typeIndexID - Static variable in class org.cleartk.ne.type.Chunk_Type
typeIndexID - Static variable in class org.cleartk.ne.type.GazetteerNamedEntityMention
typeIndexID - Static variable in class org.cleartk.ne.type.GazetteerNamedEntityMention_Type
typeIndexID - Static variable in class org.cleartk.ne.type.NamedEntity
typeIndexID - Static variable in class org.cleartk.ne.type.NamedEntity_Type
typeIndexID - Static variable in class org.cleartk.ne.type.NamedEntityMention
typeIndexID - Static variable in class org.cleartk.ne.type.NamedEntityMention_Type
typeIndexID - Static variable in class org.cleartk.score.type.ScoredAnnotation
typeIndexID - Static variable in class org.cleartk.score.type.ScoredAnnotation_Type
typeIndexID - Static variable in class org.cleartk.score.type.ScoredTOP
typeIndexID - Static variable in class org.cleartk.score.type.ScoredTOP_Type
typeIndexID - Static variable in class org.cleartk.srl.type.Argument
typeIndexID - Static variable in class org.cleartk.srl.type.Argument_Type
typeIndexID - Static variable in class org.cleartk.srl.type.Chunk
typeIndexID - Static variable in class org.cleartk.srl.type.Chunk_Type
typeIndexID - Static variable in class org.cleartk.srl.type.Predicate
typeIndexID - Static variable in class org.cleartk.srl.type.Predicate_Type
typeIndexID - Static variable in class org.cleartk.srl.type.SemanticArgument
typeIndexID - Static variable in class org.cleartk.srl.type.SemanticArgument_Type
typeIndexID - Static variable in class org.cleartk.syntax.constituent.type.TerminalTreebankNode
typeIndexID - Static variable in class org.cleartk.syntax.constituent.type.TerminalTreebankNode_Type
typeIndexID - Static variable in class org.cleartk.syntax.constituent.type.TopTreebankNode
typeIndexID - Static variable in class org.cleartk.syntax.constituent.type.TopTreebankNode_Type
typeIndexID - Static variable in class org.cleartk.syntax.constituent.type.TreebankNode
typeIndexID - Static variable in class org.cleartk.syntax.constituent.type.TreebankNode_Type
typeIndexID - Static variable in class org.cleartk.syntax.dependency.type.DependencyNode
typeIndexID - Static variable in class org.cleartk.syntax.dependency.type.DependencyNode_Type
typeIndexID - Static variable in class org.cleartk.syntax.dependency.type.DependencyRelation
typeIndexID - Static variable in class org.cleartk.syntax.dependency.type.DependencyRelation_Type
typeIndexID - Static variable in class org.cleartk.syntax.dependency.type.TopDependencyNode
typeIndexID - Static variable in class org.cleartk.syntax.dependency.type.TopDependencyNode_Type
typeIndexID - Static variable in class org.cleartk.test.util.type.AuthorInfo
typeIndexID - Static variable in class org.cleartk.test.util.type.AuthorInfo_Type
typeIndexID - Static variable in class org.cleartk.test.util.type.Chunk
typeIndexID - Static variable in class org.cleartk.test.util.type.Chunk_Type
typeIndexID - Static variable in class org.cleartk.test.util.type.DependencyRelation
typeIndexID - Static variable in class org.cleartk.test.util.type.DependencyRelation_Type
typeIndexID - Static variable in class org.cleartk.test.util.type.Header
typeIndexID - Static variable in class org.cleartk.test.util.type.Header_Type
typeIndexID - Static variable in class org.cleartk.test.util.type.Lemma
typeIndexID - Static variable in class org.cleartk.test.util.type.Lemma_Type
typeIndexID - Static variable in class org.cleartk.test.util.type.NamedEntityMention
typeIndexID - Static variable in class org.cleartk.test.util.type.NamedEntityMention_Type
typeIndexID - Static variable in class org.cleartk.test.util.type.Orthography
typeIndexID - Static variable in class org.cleartk.test.util.type.Orthography_Type
typeIndexID - Static variable in class org.cleartk.test.util.type.Parenthetical
typeIndexID - Static variable in class org.cleartk.test.util.type.Parenthetical_Type
typeIndexID - Static variable in class org.cleartk.test.util.type.PosTag
typeIndexID - Static variable in class org.cleartk.test.util.type.PosTag_Type
typeIndexID - Static variable in class org.cleartk.test.util.type.Sentence
typeIndexID - Static variable in class org.cleartk.test.util.type.Sentence_Type
typeIndexID - Static variable in class org.cleartk.test.util.type.Token
typeIndexID - Static variable in class org.cleartk.test.util.type.Token_Type
typeIndexID - Static variable in class org.cleartk.timeml.type.Anchor
typeIndexID - Static variable in class org.cleartk.timeml.type.Anchor_Type
typeIndexID - Static variable in class org.cleartk.timeml.type.DocumentCreationTime
typeIndexID - Static variable in class org.cleartk.timeml.type.DocumentCreationTime_Type
typeIndexID - Static variable in class org.cleartk.timeml.type.Event
typeIndexID - Static variable in class org.cleartk.timeml.type.Event_Type
typeIndexID - Static variable in class org.cleartk.timeml.type.TemporalLink
typeIndexID - Static variable in class org.cleartk.timeml.type.TemporalLink_Type
typeIndexID - Static variable in class org.cleartk.timeml.type.Text
typeIndexID - Static variable in class org.cleartk.timeml.type.Text_Type
typeIndexID - Static variable in class org.cleartk.timeml.type.Time
typeIndexID - Static variable in class org.cleartk.timeml.type.Time_Type
typeIndexID - Static variable in class org.cleartk.token.type.Sentence
typeIndexID - Static variable in class org.cleartk.token.type.Sentence_Type
typeIndexID - Static variable in class org.cleartk.token.type.Subtoken
typeIndexID - Static variable in class org.cleartk.token.type.Subtoken_Type
typeIndexID - Static variable in class org.cleartk.token.type.Token
typeIndexID - Static variable in class org.cleartk.token.type.Token_Type
typeIndexID - Static variable in class org.cleartk.util.type.Parenthetical
typeIndexID - Static variable in class org.cleartk.util.type.Parenthetical_Type
TypeTestUtil() - Constructor for class org.cleartk.test.util.TypeTestUtil

U

uncheckedCast(Object) - Static method in class org.cleartk.util.ReflectionUtil: Perform an unchecked cast based on a type parameter.
UnknownKeyException(String) - Constructor for exception org.cleartk.util.collection.UnknownKeyException
URI - Static variable in class org.cleartk.util.ViewUriUtil: The view where the document Uniform Resource Identifier is placed.
UriCollectionReader() - Constructor for class org.cleartk.util.cr.UriCollectionReader
UriCollectionReader.RejectSystemDirectories - Class in org.cleartk.util.cr
UriCollectionReader.RejectSystemDirectories() - Constructor for class org.cleartk.util.cr.UriCollectionReader.RejectSystemDirectories
UriCollectionReader.RejectSystemFiles - Class in org.cleartk.util.cr
UriCollectionReader.RejectSystemFiles() - Constructor for class org.cleartk.util.cr.UriCollectionReader.RejectSystemFiles
uriCount - Variable in class org.cleartk.util.cr.UriCollectionReader
uriIter - Variable in class org.cleartk.util.cr.UriCollectionReader
UriToDocumentTextAnnotator() - Constructor for class org.cleartk.util.ae.UriToDocumentTextAnnotator
UriToXmiCasAnnotator() - Constructor for class org.cleartk.util.ae.UriToXmiCasAnnotator
UriToXmiCasAnnotator.XmlScheme - Enum in org.cleartk.util.ae

V

valueOf(String) - Static method in enum org.cleartk.util.ae.UriToXmiCasAnnotator.XmlScheme: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.cleartk.util.ae.UriToXmiCasAnnotator.XmlScheme: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Method in class org.cleartk.util.collection.CompressedStringBiMap
ViewUriUtil() - Constructor for class org.cleartk.util.ViewUriUtil

W

write(Writer) - Method in class org.cleartk.util.collection.CompressedStringBiMap
write(Writer, boolean) - Method in class org.cleartk.util.collection.CompressedStringBiMap
write(File) - Method in class org.cleartk.util.collection.GenericStringMapper
write(Writer) - Method in class org.cleartk.util.collection.GenericStringMapper
write(File) - Method in interface org.cleartk.util.collection.Writable
write(Writer) - Method in interface org.cleartk.util.collection.Writable
writeAnnotation(JCas, Annotation) - Method in class org.cleartk.util.ae.linewriter.annotation.CoveredTextAnnotationWriter
writeAnnotation(JCas, ANNOTATION_TYPE) - Method in interface org.cleartk.util.ae.linewriter.AnnotationWriter
writeBlock(JCas, Annotation) - Method in class org.cleartk.util.ae.linewriter.block.BlankLineBlockWriter
writeBlock(JCas, Annotation) - Method in class org.cleartk.util.ae.linewriter.block.DocumentIdBlockWriter
writeBlock(JCas, Annotation) - Method in class org.cleartk.util.ae.linewriter.block.DoNothingBlockWriter
writeBlock(JCas, BLOCK_TYPE) - Method in interface org.cleartk.util.ae.linewriter.BlockWriter

X

XCAS - Static variable in class org.cleartk.util.cr.XReader
XMI - Static variable in class org.cleartk.util.cr.XReader
XmiWriter - Class in org.cleartk.util.ae: This is a simple annotator for writing out XMI files, used by the parsing examples.
XmiWriter() - Constructor for class org.cleartk.util.ae.XmiWriter
XReader() - Constructor for class org.cleartk.util.cr.XReader

A B C D E F G H I J L M N O P R S T U V W X