Hierarchy For All Packages

Class Hierarchy

• java.lang.Object
  • opennlp.tools.parser.AbstractBottomUpParser (implements opennlp.tools.parser.Parser)
    • opennlp.tools.parser.chunking.Parser
      • org.cleartk.opennlp.tools.parser.Parser
  • org.apache.commons.io.filefilter.AbstractFileFilter (implements org.apache.commons.io.filefilter.IOFileFilter)
    • org.cleartk.util.cr.RegexFileFilter (implements java.io.Serializable)
  • org.apache.uima.analysis_component.AnalysisComponent_ImplBase (implements org.apache.uima.analysis_component.AnalysisComponent)
    • org.apache.uima.analysis_component.Annotator_ImplBase
      • org.apache.uima.analysis_component.JCasAnnotator_ImplBase
        • org.apache.uima.fit.component.JCasAnnotator_ImplBase
          • org.cleartk.corpus.ace2005.Ace2005GoldAnnotator
          • org.cleartk.corpus.ace2005.Ace2005Writer
          • org.cleartk.token.breakit.BreakIteratorAnnotator
          • org.cleartk.ml.CleartkAnnotator<OUTCOME_TYPE> (implements org.apache.uima.fit.factory.initializable.Initializable)
            • org.cleartk.timeml.event.EventAnnotator
            • org.cleartk.timeml.event.EventAttributeAnnotator<OUTCOME_TYPE>
              • org.cleartk.timeml.event.EventAspectAnnotator
              • org.cleartk.timeml.event.EventClassAnnotator
              • org.cleartk.timeml.event.EventModalityAnnotator
              • org.cleartk.timeml.event.EventPolarityAnnotator
              • org.cleartk.timeml.event.EventTenseAnnotator
            • org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase<SOURCE,TARGET>
              • org.cleartk.timeml.tlink.TemporalLinkEventToDocumentCreationTimeAnnotator
              • org.cleartk.timeml.tlink.TemporalLinkEventToSameSentenceTimeAnnotator
              • org.cleartk.timeml.tlink.TemporalLinkEventToSubordinatedEventAnnotator
              • org.cleartk.timeml.tlink.TemporalLinkMainEventToNextSentenceMainEventAnnotator
            • org.cleartk.timeml.time.TimeTypeAnnotator
            • org.cleartk.timeml.tlink.VerbClauseTemporalAnnotator
          • org.cleartk.ml.multi.CleartkMultiAnnotator<OUTCOME_TYPE> (implements org.apache.uima.fit.factory.initializable.Initializable)
          • org.cleartk.ml.CleartkSequenceAnnotator<OUTCOME_TYPE> (implements org.apache.uima.fit.factory.initializable.Initializable)
            • org.cleartk.token.pos.PosAnnotator<TOKEN_TYPE,SENTENCE_TYPE>
              • org.cleartk.token.pos.impl.DefaultPosAnnotator
            • org.cleartk.timeml.time.TimeAnnotator
          • org.cleartk.corpus.conll2005.Conll2005GoldAnnotator
          • org.cleartk.corpus.conll2005.Conll2005Writer
          • org.cleartk.util.ae.linewriter.LineWriter<ANNOTATION_TYPE,BLOCK_TYPE>
          • org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
          • org.cleartk.opennlp.tools.parser.ParserWrapper_ImplBase<TOKEN_TYPE,SENTENCE_TYPE,PARSE_TYPE,TOP_NODE_TYPE>
            • org.cleartk.opennlp.tools.ParserAnnotator<TOKEN_TYPE,SENTENCE_TYPE,TOP_NODE_TYPE>
          • org.cleartk.corpus.timeml.PlainTextTlinkGoldAnnotator
          • org.cleartk.util.ae.PlainTextWriter
          • org.cleartk.opennlp.tools.PosTaggerAnnotator
          • org.cleartk.corpus.propbank.PropbankGoldAnnotator
          • org.cleartk.opennlp.tools.SentenceAnnotator
          • org.cleartk.snowball.SnowballStemmer<TOKEN_TYPE>
            • org.cleartk.snowball.DefaultSnowballStemmer
          • org.cleartk.corpus.timeml.TempEval2007Writer
          • org.cleartk.timeml.eval.TempEval2010Evaluation.XMIReader
          • org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
          • org.cleartk.corpus.timeml.TempEval2010Writer
          • org.cleartk.timeml.eval.TempEval2013Evaluation.CopyEventsAndTimes
          • org.cleartk.timeml.eval.TempEval2013Evaluation.CopyTextAndDocumentCreationTime
          • org.cleartk.timeml.eval.TempEval2013Evaluation.FixTimeML
          • org.cleartk.timeml.eval.TempEval2013Evaluation.SetTemporalLinkIDs
          • org.cleartk.timeml.eval.TempEval2013Evaluation.ShrinkTimesContainingEvents
          • org.cleartk.timeml.eval.TempEval2013Evaluation.UseInferredTlinks
          • org.cleartk.corpus.timeml.TempEval2013Writer
          • org.cleartk.corpus.timeml.TimeMlGoldAnnotator
          • org.cleartk.token.tokenizer.TokenAnnotator
          • org.cleartk.corpus.timeml.TreebankAligningAnnotator
          • org.cleartk.corpus.penntreebank.TreebankGoldAnnotator
          • org.cleartk.util.ae.UriToDocumentTextAnnotator
          • org.cleartk.util.ae.UriToXmiCasAnnotator
          • org.cleartk.util.ae.XmiWriter
            • org.cleartk.util.cr.linereader.LineReaderXmiWriter
        • org.cleartk.timeml.TimeMlAnnotate.AddEmptyDCT
  • org.cleartk.eval.AnnotationStatistics<OUTCOME_TYPE> (implements java.io.Serializable)
  • org.cleartk.util.AnnotationUtil
  • org.cleartk.ml.encoder.features.BagEncoder (implements org.cleartk.ml.encoder.features.FeatureEncoder<T>)
  • org.cleartk.util.BaseConversion
  • org.cleartk.util.ae.linewriter.block.BlankLineBlockWriter (implements org.cleartk.util.ae.linewriter.BlockWriter<BLOCK_TYPE>)
  • org.cleartk.ml.encoder.features.BooleanEncoder (implements org.cleartk.ml.encoder.features.FeatureEncoder<T>)
  • org.cleartk.ml.encoder.outcome.BooleanToBooleanOutcomeEncoder (implements org.cleartk.ml.encoder.outcome.OutcomeEncoder<OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>)
  • org.cleartk.ml.encoder.outcome.BooleanToSignOutcomeEncoder (implements org.cleartk.ml.encoder.outcome.OutcomeEncoder<OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>)
  • org.cleartk.ml.encoder.outcome.BooleanToStringOutcomeEncoder (implements org.cleartk.ml.encoder.outcome.OutcomeEncoder<OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>)
  • org.cleartk.token.breakit.BreakIteratorAnnotatorFactory
  • org.cleartk.ml.jar.BuildJar
  • org.cleartk.ml.feature.function.CapitalTypeFeatureFunction (implements org.cleartk.ml.feature.function.FeatureFunction)
  • org.cleartk.ml.feature.util.CaseUtil
  • org.cleartk.opennlp.tools.parser.CasPosTagger<TOKEN_TYPE,SENTENCE_TYPE> (implements opennlp.tools.postag.POSTagger)
  • org.cleartk.ml.feature.function.CharacterCategoryPatternFunction<T> (implements org.cleartk.ml.feature.function.FeatureFunction)
  • org.cleartk.ml.feature.function.CharacterNgramFeatureFunction (implements org.cleartk.ml.feature.function.FeatureFunction)
  • org.cleartk.ml.chunking.Chunking_ImplBase<SUB_CHUNK_TYPE,CHUNK_TYPE> (implements org.cleartk.ml.chunking.Chunking<OUTCOME_TYPE,SUB_CHUNK_TYPE,CHUNK_TYPE>)
    • org.cleartk.ml.chunking.BiesoChunking<SUB_CHUNK_TYPE,CHUNK_TYPE>
    • org.cleartk.ml.chunking.BioChunking<SUB_CHUNK_TYPE,CHUNK_TYPE>
    • org.cleartk.ml.chunking.IoChunking<SUB_CHUNK_TYPE,CHUNK_TYPE>
  • org.cleartk.ml.feature.extractor.CleartkExtractor<FOCUS_T,SEARCH_T> (implements org.cleartk.ml.feature.extractor.FeatureExtractor1<T>, org.cleartk.ml.feature.extractor.FeatureExtractor2<T,U>)
  • org.cleartk.ml.feature.extractor.CleartkExtractor.Bag (implements org.cleartk.ml.feature.extractor.CleartkExtractor.Context)
  • org.cleartk.ml.feature.extractor.CleartkExtractor.Count (implements org.cleartk.ml.feature.extractor.CleartkExtractor.Context)
  • org.cleartk.ml.feature.extractor.CleartkExtractor.Covered (implements org.cleartk.ml.feature.extractor.CleartkExtractor.Context)
  • org.cleartk.ml.feature.extractor.CleartkExtractor.FirstCovered
  • org.cleartk.ml.feature.extractor.CleartkExtractor.Focus (implements org.cleartk.ml.feature.extractor.CleartkExtractor.Context)
  • org.cleartk.ml.feature.extractor.CleartkExtractor.Following
  • org.cleartk.ml.feature.extractor.CleartkExtractor.LastCovered
  • org.cleartk.ml.feature.extractor.CleartkExtractor.Ngram (implements org.cleartk.ml.feature.extractor.CleartkExtractor.Context)
  • org.cleartk.ml.feature.extractor.CleartkExtractor.Ngrams (implements org.cleartk.ml.feature.extractor.CleartkExtractor.Context)
  • org.cleartk.ml.feature.extractor.CleartkExtractor.Preceding
  • org.cleartk.timeml.util.CleartkInternalModelFactory
  • org.cleartk.ml.feature.extractor.CombinedExtractor1<T> (implements org.cleartk.ml.feature.extractor.FeatureExtractor1<T>)
  • org.cleartk.eval.util.ConfusionMatrix<T>
  • org.cleartk.ml.feature.function.ContainsHyphenFeatureFunction (implements org.cleartk.ml.feature.function.FeatureFunction)
  • org.cleartk.ml.feature.transform.extractor.CosineSimilarity (implements org.cleartk.ml.feature.transform.extractor.SimilarityFunction)
  • org.cleartk.ml.feature.Counts
  • org.cleartk.util.ae.linewriter.annotation.CoveredTextAnnotationWriter (implements org.cleartk.util.ae.linewriter.AnnotationWriter<ANNOTATION_TYPE>)
  • org.cleartk.ml.feature.extractor.CoveredTextExtractor<T> (implements org.cleartk.ml.feature.extractor.NamedFeatureExtractor1<T>)
  • org.cleartk.token.pos.impl.DefaultFeatureExtractor (implements org.apache.uima.fit.factory.initializable.Initializable, org.cleartk.token.pos.PosFeatureExtractor<TOKEN_TYPE,SENTENCE_TYPE>)
  • org.cleartk.util.cr.linereader.DefaultLineHandler (implements org.cleartk.util.cr.linereader.LineHandler)
  • org.cleartk.ml.viterbi.DefaultOutcomeFeatureExtractor (implements org.cleartk.ml.viterbi.OutcomeFeatureExtractor)
  • org.cleartk.opennlp.tools.parser.DefaultOutputTypesHelper<TOKEN_TYPE,SENTENCE_TYPE> (implements org.cleartk.opennlp.tools.parser.OutputTypesHelper<TOKEN_TYPE,SENTENCE_TYPE,PARSE_TYPE,TOP_NODE_TYPE>)
  • org.cleartk.ml.feature.extractor.DirectedDistanceExtractor<T,U> (implements org.cleartk.ml.feature.extractor.FeatureExtractor2<T,U>)
  • org.cleartk.ml.jar.DirectoryDataWriter<CLASSIFIER_BUILDER,CLASSIFIER_TYPE>
    • org.cleartk.ml.jar.EncodingDirectoryDataWriter<CLASSIFIER_BUILDER_TYPE,CLASSIFIER_TYPE,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>
      • org.cleartk.ml.jar.DataWriter_ImplBase<CLASSIFIER_BUILDER_TYPE,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> (implements org.cleartk.ml.DataWriter<OUTCOME_TYPE>)
        • org.cleartk.ml.liblinear.GenericLibLinearDataWriter<CLASSIFIER_BUILDER_TYPE,OUTCOME_TYPE>
          • org.cleartk.ml.liblinear.LibLinearBooleanOutcomeDataWriter
          • org.cleartk.ml.liblinear.LibLinearStringOutcomeDataWriter
      • org.cleartk.ml.jar.SequenceDataWriter_ImplBase<CLASSIFIER_BUILDER_TYPE,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> (implements org.cleartk.ml.SequenceDataWriter<OUTCOME_TYPE>)
    • org.cleartk.ml.baseline.OutcomeOnlyDataWriter<CLASSIFIER_BUILDER,OUTCOME_TYPE> (implements org.cleartk.ml.DataWriter<OUTCOME_TYPE>)
      • org.cleartk.ml.baseline.MeanValueDataWriter
      • org.cleartk.ml.baseline.MostFrequentBooleanDataWriter
      • org.cleartk.ml.baseline.MostFrequentStringDataWriter
    • org.cleartk.ml.viterbi.ViterbiDataWriter<OUTCOME_TYPE> (implements org.cleartk.util.ReflectionUtil.TypeArgumentDelegator, org.cleartk.ml.SequenceDataWriter<OUTCOME_TYPE>)
  • org.cleartk.ml.jar.DirectoryDataWriterFactory (implements org.apache.uima.fit.factory.initializable.Initializable)
    • org.cleartk.ml.jar.EncodingDirectoryDataWriterFactory<ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> (implements org.apache.uima.fit.factory.initializable.Initializable)
      • org.cleartk.ml.jar.DataWriterFactory_ImplBase<ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> (implements org.cleartk.ml.DataWriterFactory<OUTCOME_TYPE>)
      • org.cleartk.ml.jar.SequenceDataWriterFactory_ImplBase<ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> (implements org.cleartk.ml.SequenceDataWriterFactory<OUTCOME_TYPE>)
    • org.cleartk.ml.jar.GenericDataWriterFactory<OUTCOME_TYPE>
      • org.cleartk.ml.jar.DefaultDataWriterFactory<OUTCOME_TYPE> (implements org.cleartk.ml.DataWriterFactory<OUTCOME_TYPE>)
      • org.cleartk.ml.jar.DefaultSequenceDataWriterFactory<OUTCOME_TYPE> (implements org.cleartk.ml.SequenceDataWriterFactory<OUTCOME_TYPE>)
    • org.cleartk.ml.viterbi.ViterbiDataWriterFactory<OUTCOME_TYPE> (implements org.apache.uima.fit.factory.initializable.Initializable, org.cleartk.ml.SequenceDataWriterFactory<OUTCOME_TYPE>)
  • org.cleartk.ml.feature.extractor.DistanceExtractor<T,U> (implements org.cleartk.ml.feature.extractor.FeatureExtractor2<T,U>)
  • org.cleartk.util.ae.linewriter.block.DocumentIdBlockWriter (implements org.cleartk.util.ae.linewriter.BlockWriter<BLOCK_TYPE>)
  • org.cleartk.util.ae.linewriter.block.DoNothingBlockWriter (implements org.cleartk.util.ae.linewriter.BlockWriter<BLOCK_TYPE>)
  • org.cleartk.ml.encoder.outcome.DoubleToDoubleOutcomeEncoder (implements org.cleartk.ml.encoder.outcome.OutcomeEncoder<OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>)
  • org.cleartk.ml.jar.EncodingJarClassifier<ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>
    • org.cleartk.ml.jar.Classifier_ImplBase<ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> (implements org.cleartk.ml.Classifier<OUTCOME_TYPE>)
      • org.cleartk.ml.liblinear.GenericLibLinearClassifier<OUTCOME_TYPE>
        • org.cleartk.ml.liblinear.LibLinearBooleanOutcomeClassifier
        • org.cleartk.ml.liblinear.LibLinearStringOutcomeClassifier
    • org.cleartk.ml.jar.SequenceClassifier_ImplBase<ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> (implements org.cleartk.ml.SequenceClassifier<OUTCOME_TYPE>)
  • org.cleartk.ml.encoder.features.normalizer.EuclidianNormalizer (implements org.cleartk.ml.encoder.features.normalizer.NameNumberNormalizer)
  • org.cleartk.eval.Evaluation_ImplBase<ITEM_TYPE,STATS_TYPE>
    • org.cleartk.timeml.eval.TempEval2010Evaluation
    • org.cleartk.timeml.eval.TempEval2013Evaluation
  • org.cleartk.ml.Feature (implements java.io.Serializable)
    • org.cleartk.ml.feature.extractor.CleartkExtractor.NestedCountFeature
    • org.cleartk.ml.feature.transform.TransformableFeature
    • org.cleartk.ml.TreeFeature
    • org.cleartk.ml.feature.TypePathFeature
  • org.cleartk.ml.feature.FeatureCollection
  • org.cleartk.ml.encoder.features.FeatureCollectionEncoder (implements org.cleartk.ml.encoder.features.FeatureEncoder<T>)
  • org.cleartk.ml.encoder.features.FeatureEncoderChain<ENCODED_TYPE> (implements org.cleartk.ml.encoder.features.FeatureEncoder<T>)
    • org.cleartk.ml.encoder.features.FeaturesEncoder_ImplBase<ENCODED_FEATURES_TYPE,ENCODED_FEATURE_TYPE> (implements org.cleartk.ml.encoder.features.FeaturesEncoder<ENCODED_FEATURES_TYPE>)
      • org.cleartk.ml.encoder.features.FeatureVectorFeaturesEncoder
      • org.cleartk.ml.encoder.features.NameNumberFeaturesEncoder
  • org.cleartk.ml.encoder.FeatureEncoderUtil
  • org.cleartk.ml.feature.function.FeatureFunctionExtractor<T> (implements org.cleartk.ml.feature.extractor.FeatureExtractor1<T>)
  • org.cleartk.ml.liblinear.encoder.FeatureNodeArrayEncoder (implements org.cleartk.ml.encoder.features.FeaturesEncoder<ENCODED_FEATURES_TYPE>)
  • org.apache.uima.cas.impl.FeatureStructureImpl (implements java.lang.Cloneable, org.apache.uima.cas.FeatureStructure)
    • org.apache.uima.jcas.cas.TOP
      • org.apache.uima.jcas.cas.AnnotationBase (implements org.apache.uima.cas.AnnotationBaseFS)
        • org.apache.uima.jcas.tcas.Annotation (implements org.apache.uima.cas.text.AnnotationFS)
          • org.cleartk.score.type.ScoredAnnotation
            • org.cleartk.ne.type.Ace2005Document
            • org.cleartk.timeml.type.Anchor
              • org.cleartk.timeml.type.Event
              • org.cleartk.timeml.type.Time
                • org.cleartk.timeml.type.DocumentCreationTime
            • org.cleartk.srl.type.Argument
              • org.cleartk.srl.type.SemanticArgument
            • org.cleartk.ne.type.Chunk
            • org.cleartk.srl.type.Chunk
            • org.cleartk.syntax.dependency.type.DependencyNode
              • org.cleartk.syntax.dependency.type.TopDependencyNode
            • org.cleartk.ne.type.NamedEntityMention
              • org.cleartk.ne.type.GazetteerNamedEntityMention
            • org.cleartk.util.type.Parenthetical
            • org.cleartk.srl.type.Predicate
            • org.cleartk.token.type.Sentence
            • org.cleartk.token.type.Subtoken
            • org.cleartk.timeml.type.TemporalLink
            • org.cleartk.timeml.type.Text
            • org.cleartk.token.type.Token
            • org.cleartk.syntax.constituent.type.TreebankNode
              • org.cleartk.syntax.constituent.type.TerminalTreebankNode
              • org.cleartk.syntax.constituent.type.TopTreebankNode
      • org.cleartk.score.type.ScoredTOP
        • org.cleartk.syntax.dependency.type.DependencyRelation
        • org.cleartk.ne.type.NamedEntity
  • org.cleartk.ml.util.featurevector.FeatureVector (implements java.lang.Iterable<T>)
    • org.cleartk.ml.util.featurevector.ArrayFeatureVector
    • org.cleartk.ml.util.featurevector.SparseFeatureVector
  • org.cleartk.ml.util.featurevector.FeatureVector.Entry
  • org.cleartk.feature.FilteringExtractor<T> (implements org.cleartk.ml.feature.extractor.FeatureExtractor1<T>)
  • org.cleartk.ml.feature.transform.extractor.FixedCosineSimilarity (implements org.cleartk.ml.feature.transform.extractor.SimilarityFunction)
  • com.google.common.collect.ForwardingObject
    • com.google.common.collect.ForwardingMap<K,V> (implements java.util.Map<K,V>)
      • org.cleartk.util.collection.CompressedStringBiMap (implements org.cleartk.util.collection.GenKeyBiMap<K,V>, java.io.Serializable)
  • org.cleartk.ml.jar.GenericJarClassifierFactory<CLASSIFIER_TYPE> (implements org.apache.uima.fit.factory.initializable.Initializable)
    • org.cleartk.ml.jar.JarClassifierFactory<OUTCOME_TYPE> (implements org.cleartk.ml.ClassifierFactory<OUTCOME_TYPE>)
    • org.cleartk.ml.jar.SequenceJarClassifierFactory<OUTCOME_TYPE> (implements org.cleartk.ml.SequenceClassifierFactory<OUTCOME_TYPE>)
  • org.cleartk.util.collection.GenericStringMapper (implements org.cleartk.util.collection.StringMapper, org.cleartk.util.collection.Writable)
  • org.cleartk.corpus.genia.pos.Genia2PlainText
  • org.cleartk.corpus.genia.pos.util.GeniaParse
  • org.cleartk.corpus.genia.pos.util.GeniaPosParser (implements java.util.Iterator<E>)
  • org.cleartk.corpus.genia.pos.util.GeniaSentence
  • org.cleartk.corpus.genia.pos.util.GeniaTag
  • org.cleartk.feature.syntax.HeadWordExtractor (implements org.cleartk.ml.feature.extractor.FeatureExtractor1<T>)
  • org.cleartk.ml.feature.util.HyphenUtil
  • org.cleartk.opennlp.tools.parser.InputTypesHelper<TOKEN_TYPE,SENTENCE_TYPE>
    • org.cleartk.opennlp.tools.parser.DefaultInputTypesHelper
  • org.cleartk.ml.Instance<OUTCOME_TYPE> (implements java.io.Serializable)
    • org.cleartk.ml.feature.transform.InstanceStream.Terminator<OUTCOME_T> (implements java.io.Serializable)
  • org.cleartk.ml.feature.transform.InstanceDataWriter<OUTCOME_T> (implements org.cleartk.ml.DataWriter<OUTCOME_TYPE>)
  • org.cleartk.ml.util.InstanceFactory
  • org.cleartk.ml.Instances
  • org.cleartk.ml.feature.transform.InstanceStream<OUTCOME_T> (implements java.lang.Iterable<T>)
  • org.cleartk.ml.feature.transform.InstanceStream.Iterator<OUTCOME_T> (implements java.util.Iterator<E>)
  • org.cleartk.util.IoUtil
  • org.cleartk.ml.jar.JarClassifierBuilder<CLASSIFIER_TYPE>
    • org.cleartk.ml.jar.EncodingJarClassifierBuilder<CLASSIFIER_TYPE,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>
      • org.cleartk.ml.jar.ClassifierBuilder_ImplBase<CLASSIFIER_TYPE,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>
        • org.cleartk.ml.liblinear.GenericLibLinearClassifierBuilder<CLASSIFIER_TYPE,OUTCOME_TYPE>
          • org.cleartk.ml.liblinear.LibLinearBooleanOutcomeClassifierBuilder
          • org.cleartk.ml.liblinear.LibLinearStringOutcomeClassifierBuilder
      • org.cleartk.ml.jar.SequenceClassifierBuilder_ImplBase<CLASSIFIER_TYPE,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>
    • org.cleartk.ml.baseline.SingleOutcomeClassifierBuilder<OUTCOME_TYPE>
      • org.cleartk.ml.baseline.MeanValueClassifierBuilder
      • org.cleartk.ml.baseline.MostFrequentValueClassifierBuilder<OUTCOME_TYPE>
        • org.cleartk.ml.baseline.MostFrequentBooleanClassifierBuilder
        • org.cleartk.ml.baseline.MostFrequentStringClassifierBuilder
    • org.cleartk.ml.viterbi.ViterbiClassifierBuilder<OUTCOME_TYPE>
  • org.cleartk.ml.jar.JarStreams
  • org.cleartk.util.similarity.Levenshtein
  • org.cleartk.ml.sigmoid.LinWengPlatt
  • org.cleartk.corpus.penntreebank.ListSpecification (implements java.lang.Iterable<T>)
  • org.cleartk.ml.feature.function.LowerCaseFeatureFunction (implements org.cleartk.ml.feature.function.FeatureFunction)
  • org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor.MinMaxRunningStat (implements java.io.Serializable)
  • org.cleartk.timeml.eval.ModelInfo<ANNOTATION_TYPE>
    • org.cleartk.timeml.eval.EventModelInfo
    • org.cleartk.timeml.eval.TemporalLinkModelInfo
    • org.cleartk.timeml.eval.TimeModelInfo
  • org.cleartk.ml.encoder.features.MultiBagEncoder (implements org.cleartk.ml.encoder.features.FeatureEncoder<T>)
  • org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.CombineScoreMethod.CombineScoreFunction<OUTCOME_T> (implements com.google.common.base.Function<F,T>)
    • org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.CombineScoreMethod.AverageScores<OUTCOME_T>
    • org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.CombineScoreMethod.MaxScores<OUTCOME_T>
  • org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.MutualInformationStats<OUTCOME_T>
  • org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.MutualInformationStats.ComputeFeatureScore<OUTCOME_T> (implements com.google.common.base.Function<F,T>)
  • org.cleartk.ml.encoder.features.NameNumber
  • org.cleartk.ml.feature.extractor.NamingExtractor1<T> (implements org.cleartk.ml.feature.extractor.FeatureExtractor1<T>)
  • org.cleartk.ml.encoder.features.normalizer.NoOpNormalizer (implements org.cleartk.ml.encoder.features.normalizer.NameNumberNormalizer)
  • org.cleartk.ml.encoder.features.NumberEncoder (implements org.cleartk.ml.encoder.features.FeatureEncoder<T>)
  • org.cleartk.ml.feature.function.NumericTypeFeatureFunction (implements org.cleartk.ml.feature.function.FeatureFunction)
  • org.cleartk.ml.feature.util.NumericTypeUtil
  • org.cleartk.ml.feature.transform.OneToOneTrainableExtractor_ImplBase<OUTCOME_T> (implements org.cleartk.ml.feature.transform.TrainableExtractor<OUTCOME_T>)
    • org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor<OUTCOME_T,FOCUS_T> (implements org.cleartk.ml.feature.extractor.FeatureExtractor1<T>)
    • org.cleartk.ml.feature.transform.extractor.TfidfExtractor<OUTCOME_T,FOCUS_T> (implements org.cleartk.ml.feature.extractor.FeatureExtractor1<T>)
      • org.cleartk.ml.feature.transform.extractor.CentroidTfidfSimilarityExtractor<OUTCOME_T,FOCUS_T>
    • org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor<OUTCOME_T,FOCUS_T> (implements org.cleartk.ml.feature.extractor.FeatureExtractor1<T>)
  • org.cleartk.util.ParamUtil
  • org.cleartk.feature.syntax.ParentExtractor (implements org.cleartk.ml.feature.extractor.FeatureExtractor1<T>)
  • org.cleartk.util.PlatformDetection
  • org.cleartk.opennlp.tools.PosTagger
  • org.cleartk.corpus.propbank.util.Propbank
  • org.cleartk.corpus.propbank.PropbankFormatWriter (implements org.cleartk.util.ae.linewriter.AnnotationWriter<ANNOTATION_TYPE>)
  • org.cleartk.corpus.propbank.util.PropbankRelation
    • org.cleartk.corpus.propbank.util.PropbankCorefRelation
    • org.cleartk.corpus.propbank.util.PropbankNodeRelation
    • org.cleartk.corpus.propbank.util.PropbankSplitRelation
    • org.cleartk.corpus.propbank.util.PropbankTerminalRelation
  • org.cleartk.corpus.propbank.util.Proplabel
  • org.cleartk.ml.util.PublicFieldDataWriter<T> (implements org.cleartk.ml.DataWriter<OUTCOME_TYPE>)
  • org.cleartk.ml.util.PublicFieldDataWriter.BooleanFactory (implements org.cleartk.ml.DataWriterFactory<OUTCOME_TYPE>)
  • org.cleartk.ml.util.PublicFieldDataWriter.StringFactory (implements org.cleartk.ml.DataWriterFactory<OUTCOME_TYPE>)
  • org.cleartk.ml.util.PublicFieldSequenceDataWriter<T> (implements org.cleartk.ml.SequenceDataWriter<OUTCOME_TYPE>)
  • org.cleartk.ml.util.PublicFieldSequenceDataWriter.BooleanFactory (implements org.cleartk.ml.SequenceDataWriterFactory<OUTCOME_TYPE>)
  • org.cleartk.ml.util.PublicFieldSequenceDataWriter.StringFactory (implements org.cleartk.ml.SequenceDataWriterFactory<OUTCOME_TYPE>)
  • org.cleartk.corpus.penntreebank.RangeSpecification (implements java.lang.Iterable<T>)
  • org.cleartk.util.ReflectionUtil
  • org.cleartk.ml.feature.extractor.RelativePositionExtractor<T,U> (implements org.cleartk.ml.feature.extractor.FeatureExtractor2<T,U>)
  • org.apache.uima.resource.Resource_ImplBase (implements org.apache.uima.resource.Resource)
    • org.apache.uima.resource.ConfigurableResource_ImplBase (implements org.apache.uima.resource.ConfigurableResource)
      • org.apache.uima.collection.CollectionReader_ImplBase (implements org.apache.uima.collection.CollectionReader)
        • org.apache.uima.fit.component.JCasCollectionReader_ImplBase
          • org.cleartk.corpus.ace2005.Ace2005GoldReader
          • org.cleartk.corpus.conll2003.Conll2003GoldReader
          • org.cleartk.corpus.conll2005.Conll2005GoldReader
          • org.cleartk.util.cr.FilesCollectionReader
            • org.cleartk.util.cr.XReader
          • org.cleartk.corpus.genia.pos.GeniaPosGoldReader
          • org.cleartk.util.cr.linereader.LineReader
          • org.cleartk.corpus.penntreebank.PennTreebankReader
          • org.cleartk.corpus.propbank.PropbankGoldReader
          • org.cleartk.corpus.timeml.TempEval2010CollectionReader
          • org.cleartk.util.cr.UriCollectionReader
  • org.cleartk.feature.syntax.SiblingExtractor (implements org.cleartk.ml.feature.extractor.FeatureExtractor1<T>)
  • org.cleartk.ml.sigmoid.Sigmoid (implements java.io.Serializable)
  • org.cleartk.util.cr.linereader.SimpleLineHandler (implements org.cleartk.util.cr.linereader.LineHandler)
  • org.cleartk.ml.baseline.SingleOutcomeClassifier<OUTCOME_TYPE> (implements org.cleartk.ml.Classifier<OUTCOME_TYPE>, org.cleartk.util.ReflectionUtil.TypeArgumentDelegator)
  • org.cleartk.corpus.genia.pos.util.Span
  • org.cleartk.ml.encoder.outcome.StringArrayToStringArrayEncoder (implements org.cleartk.ml.encoder.outcome.OutcomeEncoder<OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>)
  • org.cleartk.ml.encoder.features.StringEncoder (implements org.cleartk.ml.encoder.features.FeatureEncoder<T>)
  • org.cleartk.ml.encoder.outcome.StringToIntegerOutcomeEncoder (implements org.cleartk.ml.encoder.outcome.OutcomeEncoder<OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>)
  • org.cleartk.ml.encoder.outcome.StringToStringOutcomeEncoder (implements org.cleartk.ml.encoder.outcome.OutcomeEncoder<OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>)
  • org.cleartk.feature.syntax.SubCategorizationExtractor (implements org.cleartk.ml.feature.extractor.NamedFeatureExtractor1<T>)
  • org.cleartk.feature.syntax.SyntacticFirstChildOfGrandparentOfLeafExtractor<T> (implements org.cleartk.ml.feature.extractor.NamedFeatureExtractor1<T>)
  • org.cleartk.feature.syntax.SyntacticLeafToLeafPathPartsExtractor<T,U> (implements org.cleartk.ml.feature.extractor.FeatureExtractor2<T,U>)
  • org.cleartk.feature.syntax.SyntacticPathExtractor (implements org.cleartk.ml.feature.extractor.FeatureExtractor2<T,U>)
  • org.cleartk.feature.syntax.TargetPathExtractor (implements org.cleartk.ml.feature.extractor.FeatureExtractor2<T,U>)
  • org.cleartk.timeml.eval.TempEval2010Main
    • org.cleartk.timeml.eval.TempEval2010TaskAAttributes
    • org.cleartk.timeml.eval.TempEval2010TaskAExtents
    • org.cleartk.timeml.eval.TempEval2010TaskBAttributes
    • org.cleartk.timeml.eval.TempEval2010TaskBExtents
    • org.cleartk.timeml.eval.TempEval2010TaskC
    • org.cleartk.timeml.eval.TempEval2010TaskD
    • org.cleartk.timeml.eval.TempEval2010TaskE
    • org.cleartk.timeml.eval.TempEval2010TaskF
  • org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase.SourceTargetPair
  • org.cleartk.feature.TextSliceExtractor<T> (implements org.cleartk.ml.feature.extractor.NamedFeatureExtractor1<T>)
  • org.cleartk.ml.feature.transform.extractor.TfidfExtractor.IDFMap
  • java.lang.Thread (implements java.lang.Runnable)
    • org.cleartk.util.InputStreamHandler<T>
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.apache.uima.InternationalizedException
        • org.apache.uima.UIMAException
          • org.apache.uima.resource.ResourceInitializationException
            • org.cleartk.util.CleartkInitializationException
          • org.apache.uima.resource.ResourceProcessException
            • org.apache.uima.analysis_engine.AnalysisEngineProcessException
              • org.cleartk.ml.CleartkProcessingException
                • org.cleartk.ml.encoder.CleartkEncoderException
                • org.cleartk.ml.feature.extractor.CleartkExtractorException
      • org.cleartk.ml.util.featurevector.InvalidFeatureVectorValueException
      • org.cleartk.ml.sigmoid.LinWengPlatt.ConvergenceFailure
      • java.lang.RuntimeException
        • java.lang.IllegalArgumentException
          • org.cleartk.corpus.propbank.util.PropbankFormatException
      • org.cleartk.util.collection.UnknownKeyException
  • org.cleartk.timeml.TimeMlAnnotate
  • org.cleartk.corpus.timeml.TimeMlUtil
  • org.cleartk.timeml.util.TimeWordsExtractor<T> (implements org.cleartk.ml.feature.extractor.NamedFeatureExtractor1<T>)
  • org.cleartk.token.tokenizer.Token
  • org.cleartk.token.TokenComponents
  • org.cleartk.opennlp.tools.Tokenizer
  • org.cleartk.token.tokenizer.Tokenizer_ImplBase (implements org.cleartk.token.tokenizer.Tokenizer)
    • org.cleartk.token.tokenizer.PennTreebankTokenizer
    • org.cleartk.token.tokenizer.Subtokenizer
  • org.cleartk.token.pos.TokenPosWriter (implements org.cleartk.util.ae.linewriter.AnnotationWriter<ANNOTATION_TYPE>)
  • org.cleartk.feature.token.TokenTextForSelectedPosExtractor (implements org.cleartk.ml.feature.extractor.NamedFeatureExtractor1<T>)
  • org.apache.uima.jcas.cas.TOP_Type
    • org.apache.uima.jcas.cas.AnnotationBase_Type
      • org.apache.uima.jcas.tcas.Annotation_Type
        • org.cleartk.score.type.ScoredAnnotation_Type
          • org.cleartk.ne.type.Ace2005Document_Type
          • org.cleartk.timeml.type.Anchor_Type
            • org.cleartk.timeml.type.Event_Type
            • org.cleartk.timeml.type.Time_Type
              • org.cleartk.timeml.type.DocumentCreationTime_Type
          • org.cleartk.srl.type.Argument_Type
            • org.cleartk.srl.type.SemanticArgument_Type
          • org.cleartk.ne.type.Chunk_Type
          • org.cleartk.srl.type.Chunk_Type
          • org.cleartk.syntax.dependency.type.DependencyNode_Type
            • org.cleartk.syntax.dependency.type.TopDependencyNode_Type
          • org.cleartk.ne.type.NamedEntityMention_Type
            • org.cleartk.ne.type.GazetteerNamedEntityMention_Type
          • org.cleartk.util.type.Parenthetical_Type
          • org.cleartk.srl.type.Predicate_Type
          • org.cleartk.token.type.Sentence_Type
          • org.cleartk.token.type.Subtoken_Type
          • org.cleartk.timeml.type.TemporalLink_Type
          • org.cleartk.timeml.type.Text_Type
          • org.cleartk.token.type.Token_Type
          • org.cleartk.syntax.constituent.type.TreebankNode_Type
            • org.cleartk.syntax.constituent.type.TerminalTreebankNode_Type
            • org.cleartk.syntax.constituent.type.TopTreebankNode_Type
    • org.cleartk.score.type.ScoredTOP_Type
      • org.cleartk.syntax.dependency.type.DependencyRelation_Type
      • org.cleartk.ne.type.NamedEntity_Type
  • org.cleartk.ml.jar.Train
  • org.cleartk.ml.feature.transform.TrainableExtractor_ImplBase<OUTCOME_T> (implements org.cleartk.ml.feature.transform.TrainableExtractor<OUTCOME_T>)
    • org.cleartk.ml.feature.selection.FeatureSelectionExtractor<OUTCOME_T> (implements com.google.common.base.Predicate<T>)
      • org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor<OUTCOME_T,FOCUS_T> (implements org.cleartk.ml.feature.extractor.FeatureExtractor1<T>)
  • org.cleartk.util.treebank.TreebankFormatParser
  • org.cleartk.util.treebank.TreebankNode (implements org.cleartk.util.treebank.TreebankObject)
    • org.cleartk.util.treebank.TopTreebankNode
  • org.cleartk.corpus.penntreebank.TreebankNodeConverter
  • org.cleartk.syntax.constituent.type.TreebankNodeUtil
  • org.cleartk.syntax.constituent.type.TreebankNodeUtil.TreebankNodePath
  • org.cleartk.ml.feature.extractor.TypePathExtractor<T> (implements org.cleartk.ml.feature.extractor.NamedFeatureExtractor1<T>)
  • org.cleartk.util.cr.UriCollectionReader.RejectSystemDirectories (implements org.apache.commons.io.filefilter.IOFileFilter)
  • org.cleartk.util.cr.UriCollectionReader.RejectSystemFiles (implements org.apache.commons.io.filefilter.IOFileFilter)
  • org.cleartk.timeml.tlink.VerbClauseTemporalAnnotate
  • org.cleartk.timeml.tlink.VerbClauseTemporalTrain
  • org.cleartk.util.ViewUriUtil
  • org.cleartk.ml.viterbi.ViterbiClassifier<OUTCOME_TYPE> (implements org.apache.uima.fit.factory.initializable.Initializable, org.cleartk.util.ReflectionUtil.TypeArgumentDelegator, org.cleartk.ml.SequenceClassifier<OUTCOME_TYPE>)
  • org.cleartk.ml.feature.extractor.WhiteSpaceExtractor<T> (implements org.cleartk.ml.feature.extractor.NamedFeatureExtractor1<T>)
  • org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanStddevTuple
  • org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat (implements java.io.Serializable)

Interface Hierarchy

• org.cleartk.corpus.ace2005.Ace2005Constants
• org.cleartk.util.ae.linewriter.AnnotationWriter<ANNOTATION_TYPE>
• org.cleartk.util.ae.linewriter.BlockWriter<BLOCK_TYPE>
• org.cleartk.ml.chunking.Chunking<OUTCOME_TYPE,SUB_CHUNK_TYPE,CHUNK_TYPE>
• org.cleartk.ml.Classifier<OUTCOME_TYPE>
• org.cleartk.ml.ClassifierFactory<OUTCOME_TYPE>
• org.cleartk.ml.feature.extractor.CleartkExtractor.Bounds
• org.cleartk.ml.feature.extractor.CleartkExtractor.Context
• org.cleartk.corpus.conll2005.Conll2005Constants
• org.cleartk.ml.DataWriter<OUTCOME_TYPE>
• org.cleartk.ml.DataWriterFactory<OUTCOME_TYPE>
• org.cleartk.eval.EvaluationConstants
• org.cleartk.ml.feature.extractor.FeatureExtractor1<T>
  • org.cleartk.ml.feature.extractor.NamedFeatureExtractor1<T>
• org.cleartk.ml.feature.extractor.FeatureExtractor2<T,U>
• com.google.common.base.Function<F,T>
  • org.cleartk.ml.feature.function.FeatureFunction
• org.cleartk.corpus.genia.pos.GeniaPosViewName
• org.apache.uima.fit.factory.initializable.Initializable
  • org.cleartk.util.cr.linereader.LineHandler
  • org.cleartk.ml.viterbi.OutcomeFeatureExtractor (also extends java.io.Serializable)
• java.util.Map<K,V>
  • com.google.common.collect.BiMap<K,V>
    • org.cleartk.util.collection.GenKeyBiMap<K,V>
  • org.cleartk.util.collection.GenKeyBiMap<K,V>
• org.cleartk.opennlp.tools.parser.OutputTypesHelper<TOKEN_TYPE,SENTENCE_TYPE,PARSE_TYPE,TOP_NODE_TYPE>
• org.cleartk.token.pos.PosFeatureExtractor<TOKEN_TYPE,SENTENCE_TYPE>
• org.cleartk.corpus.propbank.PropbankConstants
• org.cleartk.util.ReflectionUtil.TypeArgumentDelegator
• org.cleartk.ml.SequenceClassifier<OUTCOME_TYPE>
• org.cleartk.ml.SequenceClassifierFactory<OUTCOME_TYPE>
• org.cleartk.ml.SequenceDataWriter<OUTCOME_TYPE>
• org.cleartk.ml.SequenceDataWriterFactory<OUTCOME_TYPE>
• java.io.Serializable
  • org.cleartk.ml.encoder.features.FeatureEncoder<T>
  • org.cleartk.ml.encoder.features.FeaturesEncoder<ENCODED_FEATURES_TYPE>
  • org.cleartk.ml.encoder.features.normalizer.NameNumberNormalizer
  • org.cleartk.ml.encoder.outcome.OutcomeEncoder<OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>
  • org.cleartk.ml.viterbi.OutcomeFeatureExtractor (also extends org.apache.uima.fit.factory.initializable.Initializable)
  • org.cleartk.util.collection.StringMapper
• org.cleartk.ml.feature.transform.extractor.SimilarityFunction
• org.cleartk.token.tokenizer.Tokenizer
• org.cleartk.ml.feature.transform.TrainableExtractor<OUTCOME_T>
• org.cleartk.util.treebank.TreebankObject
• org.cleartk.util.collection.Writable

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.cleartk.util.ae.UriToXmiCasAnnotator.XmlScheme
    • org.cleartk.ml.feature.function.NumericTypeFeatureFunction.NumericType
    • org.cleartk.ml.feature.function.FeatureFunctionExtractor.BaseFeatures
    • org.cleartk.ml.feature.function.CharacterNgramFeatureFunction.Orientation
    • org.cleartk.ml.feature.function.CharacterCategoryPatternFunction.PatternType
    • org.cleartk.ml.feature.function.CapitalTypeFeatureFunction.CapitalType
    • org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.CombineScoreMethod
    • org.cleartk.token.breakit.BreakIteratorAnnotator.BreakIteratorType