001/** 002 * Copyright (c) 2011, Regents of the University of Colorado 003 * All rights reserved. 004 * 005 * Redistribution and use in source and binary forms, with or without 006 * modification, are permitted provided that the following conditions are met: 007 * 008 * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 009 * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 010 * Neither the name of the University of Colorado at Boulder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. 011 * 012 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 013 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 014 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 015 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE 016 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 017 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 018 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 019 * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 020 * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 021 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 022 * POSSIBILITY OF SUCH DAMAGE. 023 */ 024package org.cleartk.ml.jar; 025 026import java.io.File; 027import java.io.FileInputStream; 028import java.io.ObjectInputStream; 029 030import org.apache.uima.UimaContext; 031import org.apache.uima.resource.ResourceInitializationException; 032import org.cleartk.ml.DataWriterFactory; 033import org.cleartk.ml.SequenceDataWriterFactory; 034import org.cleartk.ml.encoder.features.FeaturesEncoder; 035import org.cleartk.ml.encoder.features.FeaturesEncoder_ImplBase; 036import org.cleartk.ml.encoder.outcome.OutcomeEncoder; 037import org.cleartk.util.CleartkInitializationException; 038import org.cleartk.util.ReflectionUtil; 039import org.apache.uima.fit.component.initialize.ConfigurationParameterInitializer; 040import org.apache.uima.fit.descriptor.ConfigurationParameter; 041import org.apache.uima.fit.factory.initializable.Initializable; 042 043/** 044 * Superclass for {@link DataWriterFactory} and {@link SequenceDataWriterFactory} implementations 045 * that use {@link FeaturesEncoder}s and {@link OutcomeEncoder}s. 046 * 047 * Note that it does not declare that it implements either of the DataWriterFactory interfaces. 048 * Subclasses should do this. 049 * 050 * <br> 051 * Copyright (c) 2011, Regents of the University of Colorado <br> 052 * All rights reserved. 053 * 054 * @author Steven Bethard 055 * @author Philip Ogren 056 */ 057public abstract class EncodingDirectoryDataWriterFactory<ENCODED_FEATURES_TYPE, OUTCOME_TYPE, ENCODED_OUTCOME_TYPE> 058 extends DirectoryDataWriterFactory implements Initializable { 059 060 public static final String PARAM_LOAD_ENCODERS_FROM_FILE_SYSTEM = "loadEncodersFromFileSystem"; 061 062 @ConfigurationParameter( 063 name = PARAM_LOAD_ENCODERS_FROM_FILE_SYSTEM, 064 mandatory = false, 065 description = "when true indicates that the FeaturesEncoder and " 066 + "OutcomeEncoder should be loaded from the file system " 067 + "instead of being created by the DataWriterFactory", 068 defaultValue = "false") 069 private boolean loadEncodersFromFileSystem = false; 070 071 public void initialize(UimaContext context) throws ResourceInitializationException { 072 super.initialize(context); 073 ConfigurationParameterInitializer.initialize(this, context); 074 if (loadEncodersFromFileSystem) { 075 try { 076 File encoderFile = new File(outputDirectory, FeaturesEncoder_ImplBase.ENCODERS_FILE_NAME); 077 078 if (!encoderFile.exists()) { 079 throw CleartkInitializationException.fileNotFound(encoderFile); 080 } 081 082 ObjectInputStream is = new ObjectInputStream(new FileInputStream(encoderFile)); 083 084 // read the FeaturesEncoder and check the types 085 FeaturesEncoder<?> untypedFeaturesEncoder = FeaturesEncoder.class.cast(is.readObject()); 086 ReflectionUtil.checkTypeParameterIsAssignable( 087 FeaturesEncoder.class, 088 "ENCODED_FEATURES_TYPE", 089 untypedFeaturesEncoder, 090 EncodingDirectoryDataWriterFactory.class, 091 "ENCODED_FEATURES_TYPE", 092 this); 093 094 // read the OutcomeEncoder and check the types 095 OutcomeEncoder<?, ?> untypedOutcomeEncoder = OutcomeEncoder.class.cast(is.readObject()); 096 ReflectionUtil.checkTypeParameterIsAssignable( 097 OutcomeEncoder.class, 098 "OUTCOME_TYPE", 099 untypedOutcomeEncoder, 100 EncodingDirectoryDataWriterFactory.class, 101 "OUTCOME_TYPE", 102 this); 103 ReflectionUtil.checkTypeParameterIsAssignable( 104 OutcomeEncoder.class, 105 "ENCODED_OUTCOME_TYPE", 106 untypedOutcomeEncoder, 107 EncodingDirectoryDataWriterFactory.class, 108 "ENCODED_OUTCOME_TYPE", 109 this); 110 111 // assign the encoders to the instance variables 112 this.featuresEncoder = ReflectionUtil.uncheckedCast(untypedFeaturesEncoder); 113 this.outcomeEncoder = ReflectionUtil.uncheckedCast(untypedOutcomeEncoder); 114 is.close(); 115 } catch (Exception e) { 116 throw new ResourceInitializationException(e); 117 } 118 } 119 } 120 121 protected boolean setEncodersFromFileSystem( 122 EncodingDirectoryDataWriter<?, ?, ENCODED_FEATURES_TYPE, OUTCOME_TYPE, ENCODED_OUTCOME_TYPE> dataWriter) { 123 if (this.featuresEncoder != null && this.outcomeEncoder != null) { 124 dataWriter.setFeaturesEncoder(this.featuresEncoder); 125 dataWriter.setOutcomeEncoder(this.outcomeEncoder); 126 return true; 127 } 128 return false; 129 } 130 131 protected FeaturesEncoder<ENCODED_FEATURES_TYPE> featuresEncoder = null; 132 133 protected OutcomeEncoder<OUTCOME_TYPE, ENCODED_OUTCOME_TYPE> outcomeEncoder = null; 134 135}