001/* 002 * Copyright (c) 2011, Regents of the University of Colorado 003 * All rights reserved. 004 * 005 * Redistribution and use in source and binary forms, with or without 006 * modification, are permitted provided that the following conditions are met: 007 * 008 * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 009 * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 010 * Neither the name of the University of Colorado at Boulder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. 011 * 012 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 013 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 014 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 015 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE 016 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 017 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 018 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 019 * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 020 * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 021 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 022 * POSSIBILITY OF SUCH DAMAGE. 023 */ 024package org.cleartk.timeml.time; 025 026import java.util.ArrayList; 027import java.util.Arrays; 028import java.util.List; 029 030import org.apache.uima.UimaContext; 031import org.apache.uima.analysis_engine.AnalysisEngineDescription; 032import org.apache.uima.analysis_engine.AnalysisEngineProcessException; 033import org.apache.uima.fit.factory.AnalysisEngineFactory; 034import org.apache.uima.fit.util.JCasUtil; 035import org.apache.uima.jcas.JCas; 036import org.apache.uima.jcas.tcas.Annotation; 037import org.apache.uima.resource.ResourceInitializationException; 038import org.cleartk.ml.CleartkAnnotator; 039import org.cleartk.ml.Feature; 040import org.cleartk.ml.Instance; 041import org.cleartk.ml.feature.extractor.CleartkExtractor; 042import org.cleartk.ml.feature.extractor.CoveredTextExtractor; 043import org.cleartk.ml.feature.extractor.FeatureExtractor1; 044import org.cleartk.ml.feature.extractor.NamedFeatureExtractor1; 045import org.cleartk.ml.feature.extractor.CleartkExtractor.Bag; 046import org.cleartk.ml.feature.extractor.CleartkExtractor.Covered; 047import org.cleartk.ml.feature.function.CharacterCategoryPatternFunction; 048import org.cleartk.ml.liblinear.LibLinearStringOutcomeDataWriter; 049import org.cleartk.timeml.type.Time; 050import org.cleartk.timeml.util.CleartkInternalModelFactory; 051import org.cleartk.timeml.util.TimeWordsExtractor; 052import org.cleartk.token.type.Token; 053 054import com.google.common.collect.Lists; 055 056/** 057 * <br> 058 * Copyright (c) 2011, Regents of the University of Colorado <br> 059 * All rights reserved. 060 * 061 * @author Steven Bethard 062 */ 063public class TimeTypeAnnotator extends CleartkAnnotator<String> { 064 065 public static final CleartkInternalModelFactory FACTORY = new CleartkInternalModelFactory() { 066 @Override 067 public Class<?> getAnnotatorClass() { 068 return TimeTypeAnnotator.class; 069 } 070 071 @Override 072 public Class<?> getDataWriterClass() { 073 return LibLinearStringOutcomeDataWriter.class; 074 } 075 076 @Override 077 public AnalysisEngineDescription getBaseDescription() throws ResourceInitializationException { 078 return AnalysisEngineFactory.createEngineDescription(TimeTypeAnnotator.class); 079 } 080 }; 081 082 private List<FeatureExtractor1<Time>> featuresExtractors; 083 084 @Override 085 public void initialize(UimaContext context) throws ResourceInitializationException { 086 super.initialize(context); 087 this.featuresExtractors = Lists.newArrayList(); 088 this.featuresExtractors.add(new LastWordExtractor<Time>()); 089 FeatureExtractor1<Time> ex = CharacterCategoryPatternFunction.createExtractor(); 090 this.featuresExtractors.add(ex); 091 this.featuresExtractors.add(new TimeWordsExtractor<Time>()); 092 this.featuresExtractors.add(new CleartkExtractor<Time, Token>(Token.class, new CoveredTextExtractor<Token>(), new Bag(new Covered()))); 093 } 094 095 @Override 096 public void process(JCas jCas) throws AnalysisEngineProcessException { 097 for (Time time : JCasUtil.select(jCas, Time.class)) { 098 List<Feature> features = new ArrayList<Feature>(); 099 for (FeatureExtractor1<Time> extractor : this.featuresExtractors) { 100 features.addAll(extractor.extract(jCas, time)); 101 } 102 if (this.isTraining()) { 103 this.dataWriter.write(new Instance<String>(time.getTimeType(), features)); 104 } else { 105 time.setTimeType(this.classifier.classify(features)); 106 } 107 } 108 } 109 110 private static class LastWordExtractor<T extends Annotation> implements NamedFeatureExtractor1<T> { 111 112 private String featureName; 113 114 public LastWordExtractor() { 115 this.featureName = "LastWord"; 116 } 117 118 @Override 119 public String getFeatureName() { 120 return this.featureName; 121 } 122 123 @Override 124 public List<Feature> extract(JCas view, T focusAnnotation) { 125 String[] words = focusAnnotation.getCoveredText().split("\\W+"); 126 return Arrays.asList(new Feature(this.featureName, words[words.length - 1])); 127 } 128 129 } 130}