Uses of Interface
org.colomoto.biolqm.io.LogicalModelFormat

Packages that use LogicalModelFormat

Package	Description
org.colomoto.biolqm	Core for the bioLQM toolkit: Main data structures for Logical Models Service loader and manager Launcher and Command-Line Interface Script mode
org.colomoto.biolqm.io	Input/Output for Logical Model.
org.colomoto.biolqm.io.bnet	The format used by boolnet and pyboolnet
org.colomoto.biolqm.io.booleannet	The format used by booleannet and related tools in Reka Albert's group
org.colomoto.biolqm.io.boolsim	The format used by boolsim/GenYsis.
org.colomoto.biolqm.io.cnet	The format used by boolnet and pyboolnet
org.colomoto.biolqm.io.functions	logical functions.
org.colomoto.biolqm.io.ginml	GINML support.
org.colomoto.biolqm.io.gna	GNA (non-xml) support.
org.colomoto.biolqm.io.implicanttables	Implicant table format.
org.colomoto.biolqm.io.maboss	The format used by MaBoSS - https://maboss.curie.fr/
org.colomoto.biolqm.io.mnet	A custom text format for multi-valued networks
org.colomoto.biolqm.io.petrinet	Petri net support.
org.colomoto.biolqm.io.pint	The format used by Pint - http://loicpauleve.name/pint
org.colomoto.biolqm.io.sbml	SBML qual support.
org.colomoto.biolqm.io.truthtable	TruthTable file reader.
org.colomoto.biolqm.service

Uses of LogicalModelFormat in org.colomoto.biolqm

Methods in org.colomoto.biolqm that return LogicalModelFormat

Modifier and Type	Method and Description
static LogicalModelFormat	LQMLauncher.getFormat(String name)

Uses of LogicalModelFormat in org.colomoto.biolqm.io

Classes in org.colomoto.biolqm.io that implement LogicalModelFormat

Modifier and Type	Class and Description
class	AbstractFormat Simple helper to fill in the boring parts of format declaration classes.

Uses of LogicalModelFormat in org.colomoto.biolqm.io.bnet

Classes in org.colomoto.biolqm.io.bnet that implement LogicalModelFormat

Modifier and Type	Class and Description
class	BNetFormat

Uses of LogicalModelFormat in org.colomoto.biolqm.io.booleannet

Classes in org.colomoto.biolqm.io.booleannet that implement LogicalModelFormat

Modifier and Type	Class and Description
class	BooleanNetFormat

Uses of LogicalModelFormat in org.colomoto.biolqm.io.boolsim

Classes in org.colomoto.biolqm.io.boolsim that implement LogicalModelFormat

Modifier and Type	Class and Description
class	BoolSimFormat

Uses of LogicalModelFormat in org.colomoto.biolqm.io.cnet

Classes in org.colomoto.biolqm.io.cnet that implement LogicalModelFormat

Modifier and Type	Class and Description
class	CNetFormat

Uses of LogicalModelFormat in org.colomoto.biolqm.io.functions

Classes in org.colomoto.biolqm.io.functions that implement LogicalModelFormat

Modifier and Type	Class and Description
class	BooleanFunctionFormat

Uses of LogicalModelFormat in org.colomoto.biolqm.io.ginml

Classes in org.colomoto.biolqm.io.ginml that implement LogicalModelFormat

Modifier and Type	Class and Description
class	GINMLFormat Format description for GINML files.

Uses of LogicalModelFormat in org.colomoto.biolqm.io.gna

Classes in org.colomoto.biolqm.io.gna that implement LogicalModelFormat

Modifier and Type	Class and Description
class	GNAFormat Format description for GNA (non-xml) files.

Uses of LogicalModelFormat in org.colomoto.biolqm.io.implicanttables

Classes in org.colomoto.biolqm.io.implicanttables that implement LogicalModelFormat

Modifier and Type	Class and Description
class	ImplicantTableFormat

Uses of LogicalModelFormat in org.colomoto.biolqm.io.maboss

Classes in org.colomoto.biolqm.io.maboss that implement LogicalModelFormat

Modifier and Type	Class and Description
class	MaBoSSFormat

Uses of LogicalModelFormat in org.colomoto.biolqm.io.mnet

Classes in org.colomoto.biolqm.io.mnet that implement LogicalModelFormat

Modifier and Type	Class and Description
class	MNetFormat

Uses of LogicalModelFormat in org.colomoto.biolqm.io.petrinet

Classes in org.colomoto.biolqm.io.petrinet that implement LogicalModelFormat

Modifier and Type	Class and Description
class	APNNFormat PNML is an xml-based format for Petri net models.
class	INAFormat PNML is an xml-based format for Petri net models.
class	PetriNetFormat Base format for the PN formats
class	PNMLFormat PNML is an xml-based format for Petri net models.

Uses of LogicalModelFormat in org.colomoto.biolqm.io.pint

Classes in org.colomoto.biolqm.io.pint that implement LogicalModelFormat

Modifier and Type	Class and Description
class	PintFormat

Uses of LogicalModelFormat in org.colomoto.biolqm.io.sbml

Classes in org.colomoto.biolqm.io.sbml that implement LogicalModelFormat

Modifier and Type	Class and Description
class	SBMLFormat Format description for SBML files, using the qual extension.

Uses of LogicalModelFormat in org.colomoto.biolqm.io.truthtable

Classes in org.colomoto.biolqm.io.truthtable that implement LogicalModelFormat

Modifier and Type	Class and Description
class	TruthTableFormat Format description for TruthTable (.tt) files.

Uses of LogicalModelFormat in org.colomoto.biolqm.service

Methods in org.colomoto.biolqm.service that return LogicalModelFormat

Modifier and Type	Method and Description
static LogicalModelFormat	LQMServiceManager.getFormat(String name) Get the format declaration for a given ID.

Methods in org.colomoto.biolqm.service that return types with arguments of type LogicalModelFormat

Modifier and Type	Method and Description
static Iterable<LogicalModelFormat>	LQMServiceManager.getFormats() Get the available formats.