| Package | Description |
|---|---|
| org.colomoto.biolqm.io |
Input/Output for Logical Model.
|
| org.colomoto.biolqm.io.bnet |
The format used by boolnet and pyboolnet
|
| org.colomoto.biolqm.io.booleannet |
The format used by booleannet and related tools in Reka Albert's group
|
| org.colomoto.biolqm.io.boolsim |
The format used by boolsim/GenYsis.
|
| org.colomoto.biolqm.io.cnet |
The format used by boolnet and pyboolnet
|
| org.colomoto.biolqm.io.functions |
logical functions.
|
| org.colomoto.biolqm.io.implicanttables |
Implicant table format.
|
| org.colomoto.biolqm.io.mnet |
A custom text format for multi-valued networks
|
| org.colomoto.biolqm.io.sbml |
SBML qual support.
|
| org.colomoto.biolqm.io.truthtable |
TruthTable file reader.
|
| Modifier and Type | Class and Description |
|---|---|
class |
BaseLoader
Base class for model loader.
|
| Modifier and Type | Method and Description |
|---|---|
default ModelLoader |
LogicalModelFormat.getLoader()
Get a new model loader from this format.
|
| Modifier and Type | Class and Description |
|---|---|
class |
BNetImport
Simple import reading logical functions in a text file.
|
| Modifier and Type | Class and Description |
|---|---|
class |
BooleanNetImport
launch an antlr-generated parser, listen for events and feed them to an ExpressionStack
|
| Modifier and Type | Class and Description |
|---|---|
class |
BoolSimImport
Import boolsim models.
|
| Modifier and Type | Class and Description |
|---|---|
class |
CNetImport |
| Modifier and Type | Class and Description |
|---|---|
class |
BooleanFunctionImport
Simple import reading logical functions in a text file.
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImplicantTableImport |
| Modifier and Type | Class and Description |
|---|---|
class |
MNetImport
Simple import reading multi-valued logical functions from a text file.
|
| Modifier and Type | Class and Description |
|---|---|
class |
SBMLqualImport
Crude SBML import using JSBML and the qual extension.
|
| Modifier and Type | Class and Description |
|---|---|
class |
TruthTableImport
Imports a file in the Truth Table format into a LogicalModel.
|
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